Gchil6539.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6539.t1
Unique NameGchil6539.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:427716..429137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5693.XP_813692.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
Evalue1.96e-07
EggNOG OGs2E14A@1|root,2S8GN@2759|Eukaryota
DescriptionProtein of unknown function (DUF563)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6539Gchil6539Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 427716..429137 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6539.t1.stop1Gchil6539.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 427716..427718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6539.t1.CDS1Gchil6539.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 427716..429137 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6539.t1.exon1Gchil6539.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 427716..429137 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6539.t1.start1Gchil6539.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 429135..429137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6539.t1Gchil6539.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 427716..429137 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6539.t1 ID=Gchil6539.t1|Name=Gchil6539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MHCLQRCGASQRAFSSRFISFIVALLSILICSVSIFVTYRFSFFTTTKLR
RAPWKGALTLLARQPFYVDHFTSPPSVGQEASEKAVERLHNLVSKALAVP
RGPLRNVWPQKGRTFTNAFADGDYKQVKSLVNEFCEPSLVHLPKHAPYLS
PMCLSVFENAYIGPSGAVYEPNTNIIYDMGGGCCINDWVRYTDDAIPLGR
SPKRLPIVLAMGFHHSVTYHHVVYELLPRLLHLFPLLDAEPQIYIAIDES
SVAERLLSVLGIESGRLLPIKLTESTWIHAAIVLQPPPLFLCRAEWNCVS
NSTVVTANVLRDAAMSKEAYEEERKERPYLVLMERARSRRLDGSCHEQRC
AKNFGQLRDAIEMEFGDEFEVIVVPPAMSVQQTIKTFGAADVVVGLHGAG
FQNIMYCRKGTTVVHIGWRRHYEGLAKEFGLNFHLSLMRSLRRESRNVVV
DVKSIVADVKGAINADRSSASAQ*
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spliced messenger RNA

>Gchil6539.t1 ID=Gchil6539.t1|Name=Gchil6539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004390_pilon:427716..429137- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTGCTTGCAAAGGTGTGGAGCTTCTCAACGCGCTTTCAGCTCTCG
TTTTATTTCGTTTATCGTTGCGCTCCTCAGCATACTTATCTGCTCGGTGT
CGATTTTCGTCACTTATCGATTCTCTTTCTTCACGACCACAAAGCTACGA
AGAGCCCCTTGGAAGGGCGCCCTCACGCTACTGGCGCGGCAACCGTTCTA
CGTCGACCACTTTACAAGCCCGCCTTCGGTTGGCCAGGAGGCCTCGGAAA
AGGCCGTAGAGCGACTGCACAACCTGGTGTCGAAGGCGCTGGCCGTGCCA
AGGGGTCCACTGCGAAATGTTTGGCCGCAGAAGGGGCGTACCTTCACCAA
TGCATTTGCGGACGGTGACTATAAACAAGTGAAATCGCTGGTCAACGAGT
TTTGCGAGCCGTCGCTTGTACACCTTCCGAAACACGCGCCGTACCTTTCG
CCAATGTGTCTCTCAGTTTTCGAGAATGCGTATATCGGACCATCCGGCGC
GGTATACGAGCCCAACACCAATATAATATACGACATGGGCGGCGGGTGTT
GCATTAATGACTGGGTGCGCTACACAGATGACGCAATACCGTTGGGGCGA
TCTCCGAAGCGGCTACCAATTGTGCTGGCGATGGGATTTCACCACAGCGT
GACGTATCATCATGTTGTTTACGAATTGCTGCCGCGCCTACTACATCTTT
TCCCCCTGCTTGACGCCGAACCACAGATATATATTGCGATTGACGAAAGC
TCAGTGGCGGAGCGTTTGCTATCGGTGTTGGGAATCGAATCGGGGCGACT
TTTGCCCATTAAGCTGACGGAATCAACGTGGATTCACGCAGCGATCGTGC
TGCAGCCGCCGCCACTGTTCCTGTGCCGAGCAGAGTGGAACTGCGTTTCT
AACAGCACGGTGGTGACTGCGAATGTGTTGCGAGATGCAGCCATGAGCAA
GGAGGCTTACGAAGAGGAGCGGAAAGAACGGCCTTATCTAGTGCTTATGG
AGCGGGCGCGATCCCGAAGGTTAGACGGGTCGTGCCACGAACAGCGGTGC
GCAAAAAACTTTGGCCAACTGAGAGACGCAATAGAGATGGAGTTTGGGGA
CGAATTCGAGGTGATTGTAGTGCCACCGGCAATGTCGGTGCAGCAAACAA
TCAAGACGTTTGGGGCTGCGGACGTGGTTGTCGGACTGCATGGGGCCGGA
TTTCAAAACATAATGTACTGCCGAAAAGGAACGACTGTGGTGCACATTGG
GTGGCGCAGACATTACGAGGGTCTGGCGAAAGAATTCGGGCTCAACTTCC
ACCTGTCGTTGATGCGATCGCTGAGGCGCGAGAGCCGCAACGTGGTGGTG
GACGTGAAGAGCATTGTGGCGGATGTGAAGGGTGCGATCAATGCGGACCG
GAGCAGCGCGAGTGCACAGTGA
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protein sequence of Gchil6539.t1

>Gchil6539.t1 ID=Gchil6539.t1|Name=Gchil6539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MHCLQRCGASQRAFSSRFISFIVALLSILICSVSIFVTYRFSFFTTTKLR
RAPWKGALTLLARQPFYVDHFTSPPSVGQEASEKAVERLHNLVSKALAVP
RGPLRNVWPQKGRTFTNAFADGDYKQVKSLVNEFCEPSLVHLPKHAPYLS
PMCLSVFENAYIGPSGAVYEPNTNIIYDMGGGCCINDWVRYTDDAIPLGR
SPKRLPIVLAMGFHHSVTYHHVVYELLPRLLHLFPLLDAEPQIYIAIDES
SVAERLLSVLGIESGRLLPIKLTESTWIHAAIVLQPPPLFLCRAEWNCVS
NSTVVTANVLRDAAMSKEAYEEERKERPYLVLMERARSRRLDGSCHEQRC
AKNFGQLRDAIEMEFGDEFEVIVVPPAMSVQQTIKTFGAADVVVGLHGAG
FQNIMYCRKGTTVVHIGWRRHYEGLAKEFGLNFHLSLMRSLRRESRNVVV
DVKSIVADVKGAINADRSSASAQ*
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mRNA from alignment at tig00004390_pilon:427716..429137-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6539.t1 ID=Gchil6539.t1|Name=Gchil6539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004390_pilon:427716..429137- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTGCTTGCAAAGGTGTGGAGCTTCTCAACGCGCTTTCAGCTCTCG
TTTTATTTCGTTTATCGTTGCGCTCCTCAGCATACTTATCTGCTCGGTGT
CGATTTTCGTCACTTATCGATTCTCTTTCTTCACGACCACAAAGCTACGA
AGAGCCCCTTGGAAGGGCGCCCTCACGCTACTGGCGCGGCAACCGTTCTA
CGTCGACCACTTTACAAGCCCGCCTTCGGTTGGCCAGGAGGCCTCGGAAA
AGGCCGTAGAGCGACTGCACAACCTGGTGTCGAAGGCGCTGGCCGTGCCA
AGGGGTCCACTGCGAAATGTTTGGCCGCAGAAGGGGCGTACCTTCACCAA
TGCATTTGCGGACGGTGACTATAAACAAGTGAAATCGCTGGTCAACGAGT
TTTGCGAGCCGTCGCTTGTACACCTTCCGAAACACGCGCCGTACCTTTCG
CCAATGTGTCTCTCAGTTTTCGAGAATGCGTATATCGGACCATCCGGCGC
GGTATACGAGCCCAACACCAATATAATATACGACATGGGCGGCGGGTGTT
GCATTAATGACTGGGTGCGCTACACAGATGACGCAATACCGTTGGGGCGA
TCTCCGAAGCGGCTACCAATTGTGCTGGCGATGGGATTTCACCACAGCGT
GACGTATCATCATGTTGTTTACGAATTGCTGCCGCGCCTACTACATCTTT
TCCCCCTGCTTGACGCCGAACCACAGATATATATTGCGATTGACGAAAGC
TCAGTGGCGGAGCGTTTGCTATCGGTGTTGGGAATCGAATCGGGGCGACT
TTTGCCCATTAAGCTGACGGAATCAACGTGGATTCACGCAGCGATCGTGC
TGCAGCCGCCGCCACTGTTCCTGTGCCGAGCAGAGTGGAACTGCGTTTCT
AACAGCACGGTGGTGACTGCGAATGTGTTGCGAGATGCAGCCATGAGCAA
GGAGGCTTACGAAGAGGAGCGGAAAGAACGGCCTTATCTAGTGCTTATGG
AGCGGGCGCGATCCCGAAGGTTAGACGGGTCGTGCCACGAACAGCGGTGC
GCAAAAAACTTTGGCCAACTGAGAGACGCAATAGAGATGGAGTTTGGGGA
CGAATTCGAGGTGATTGTAGTGCCACCGGCAATGTCGGTGCAGCAAACAA
TCAAGACGTTTGGGGCTGCGGACGTGGTTGTCGGACTGCATGGGGCCGGA
TTTCAAAACATAATGTACTGCCGAAAAGGAACGACTGTGGTGCACATTGG
GTGGCGCAGACATTACGAGGGTCTGGCGAAAGAATTCGGGCTCAACTTCC
ACCTGTCGTTGATGCGATCGCTGAGGCGCGAGAGCCGCAACGTGGTGGTG
GACGTGAAGAGCATTGTGGCGGATGTGAAGGGTGCGATCAATGCGGACCG
GAGCAGCGCGAGTGCACAGTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:427716..429137-

>Gchil6539.t1 ID=Gchil6539.t1|Name=Gchil6539.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004390_pilon:427716..429137- (Gracilaria chilensis NLEC103_M9 male)
ATGCACTGCTTGCAAAGGTGTGGAGCTTCTCAACGCGCTTTCAGCTCTCG
TTTTATTTCGTTTATCGTTGCGCTCCTCAGCATACTTATCTGCTCGGTGT
CGATTTTCGTCACTTATCGATTCTCTTTCTTCACGACCACAAAGCTACGA
AGAGCCCCTTGGAAGGGCGCCCTCACGCTACTGGCGCGGCAACCGTTCTA
CGTCGACCACTTTACAAGCCCGCCTTCGGTTGGCCAGGAGGCCTCGGAAA
AGGCCGTAGAGCGACTGCACAACCTGGTGTCGAAGGCGCTGGCCGTGCCA
AGGGGTCCACTGCGAAATGTTTGGCCGCAGAAGGGGCGTACCTTCACCAA
TGCATTTGCGGACGGTGACTATAAACAAGTGAAATCGCTGGTCAACGAGT
TTTGCGAGCCGTCGCTTGTACACCTTCCGAAACACGCGCCGTACCTTTCG
CCAATGTGTCTCTCAGTTTTCGAGAATGCGTATATCGGACCATCCGGCGC
GGTATACGAGCCCAACACCAATATAATATACGACATGGGCGGCGGGTGTT
GCATTAATGACTGGGTGCGCTACACAGATGACGCAATACCGTTGGGGCGA
TCTCCGAAGCGGCTACCAATTGTGCTGGCGATGGGATTTCACCACAGCGT
GACGTATCATCATGTTGTTTACGAATTGCTGCCGCGCCTACTACATCTTT
TCCCCCTGCTTGACGCCGAACCACAGATATATATTGCGATTGACGAAAGC
TCAGTGGCGGAGCGTTTGCTATCGGTGTTGGGAATCGAATCGGGGCGACT
TTTGCCCATTAAGCTGACGGAATCAACGTGGATTCACGCAGCGATCGTGC
TGCAGCCGCCGCCACTGTTCCTGTGCCGAGCAGAGTGGAACTGCGTTTCT
AACAGCACGGTGGTGACTGCGAATGTGTTGCGAGATGCAGCCATGAGCAA
GGAGGCTTACGAAGAGGAGCGGAAAGAACGGCCTTATCTAGTGCTTATGG
AGCGGGCGCGATCCCGAAGGTTAGACGGGTCGTGCCACGAACAGCGGTGC
GCAAAAAACTTTGGCCAACTGAGAGACGCAATAGAGATGGAGTTTGGGGA
CGAATTCGAGGTGATTGTAGTGCCACCGGCAATGTCGGTGCAGCAAACAA
TCAAGACGTTTGGGGCTGCGGACGTGGTTGTCGGACTGCATGGGGCCGGA
TTTCAAAACATAATGTACTGCCGAAAAGGAACGACTGTGGTGCACATTGG
GTGGCGCAGACATTACGAGGGTCTGGCGAAAGAATTCGGGCTCAACTTCC
ACCTGTCGTTGATGCGATCGCTGAGGCGCGAGAGCCGCAACGTGGTGGTG
GACGTGAAGAGCATTGTGGCGGATGTGAAGGGTGCGATCAATGCGGACCG
GAGCAGCGCGAGTGCACAGTGA
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