Gchil6536.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6536.t1
Unique Name	Gchil6536.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:420736..421956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118163.Ple7327_1681
PFAMs	Glyco_transf_28,UDPGT
Max annot lvl	1117\|Cyanobacteria
Evalue	6.24e-91
EggNOG OGs	COG1819@1\|root,COG1819@2\|Bacteria,1G1XQ@1117\|Cyanobacteria,3VKX2@52604\|Pleurocapsales
Description	UDP-glucoronosyl and UDP-glucosyl transferase
COG category	CG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6536	Gchil6536	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 420736..421956 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6536.t1.start1	Gchil6536.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 420736..420738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6536.t1.CDS1	Gchil6536.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 420736..421956 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6536.t1.exon1	Gchil6536.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 420736..421956 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6536.t1.stop1	Gchil6536.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 421954..421956 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6536.t1	Gchil6536.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 420736..421956 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:420736..421956+
coding sequence from alignment at tig00004390_pilon:420736..421956+

mRNA sequence

>Gchil6536.t1 ID=Gchil6536.t1|Name=Gchil6536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=407bp
MTEIALELQRRGNQIVFIGVPDIRPKLKDFDFEVLLIGEAEFPVGYVSTS
MTMLGELHGHQALRFSSDHIAENGRAYLRDGPEIVRAANLDLLVIEQTVV
SMRTVAEAQNIPYITVCVSLISNPDPLVPPVFSHRIPSAAPISKLQTYVE
HRIEKFLTHNIFTDVHQKRKEWNLPPIRDPATSHSPYATIVQLPKSIDFP
RKHLPSTFHYIGRFSDPSGTEPLSRNVSFPFEKLDGRPIIYASLGTIVNE
TQGLSSKIVQSCKGVNAQLVLSFGNPQSFVEDEIGDAIVVPFAPQEKLVS
MSSLVITHGGNNTVTMALSYGVPMVVIPVGNDQPGVAARVVAAGLGVCVN
AKKMNVGSFRSSLKEVLVGSKYREQAAKVRREIEEAGGVQKTADIAEMVA
KTGQAV*

spliced messenger RNA

>Gchil6536.t1 ID=Gchil6536.t1|Name=Gchil6536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004390_pilon:420736..421956+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAATTGCCCTCGAATTACAACGTCGCGGGAATCAAATCGTGTT
CATTGGAGTTCCGGACATTCGTCCAAAGCTCAAAGACTTTGACTTTGAAG
TGCTTCTCATCGGCGAAGCGGAGTTTCCTGTAGGATATGTGTCAACCTCA
ATGACAATGCTGGGGGAACTCCACGGCCACCAAGCCTTGCGTTTCAGCTC
AGACCACATCGCCGAGAATGGAAGGGCGTATCTAAGAGATGGACCAGAAA
TCGTCAGAGCTGCAAATCTGGATCTTCTGGTTATTGAACAGACTGTTGTT
TCCATGAGGACAGTTGCGGAAGCACAAAACATTCCCTACATCACAGTGTG
TGTTTCGCTTATCTCCAATCCGGATCCTCTTGTACCGCCTGTGTTTTCTC
ATCGTATTCCTTCTGCTGCACCTATATCCAAGCTTCAAACATATGTTGAA
CATCGGATAGAAAAGTTTCTTACACACAACATCTTCACCGACGTTCATCA
AAAGCGAAAGGAATGGAATCTGCCCCCGATTCGTGACCCCGCCACATCTC
ATTCTCCATATGCCACGATTGTTCAGCTCCCCAAATCAATTGATTTCCCC
AGGAAACATCTTCCCTCAACGTTTCACTACATTGGAAGATTCTCCGATCC
GTCGGGCACAGAACCGTTGAGCAGAAATGTTTCTTTTCCATTCGAGAAGC
TTGATGGTAGACCTATAATCTATGCTTCCCTCGGCACGATTGTAAACGAA
ACGCAAGGGCTGTCCTCAAAGATTGTACAATCATGCAAGGGAGTGAATGC
ACAACTGGTTCTATCATTCGGCAATCCGCAATCCTTTGTTGAGGACGAAA
TTGGCGACGCAATTGTGGTACCATTCGCACCACAGGAGAAGCTCGTATCA
ATGTCCTCTCTGGTTATTACGCATGGCGGAAACAACACTGTTACTATGGC
CTTGTCTTATGGGGTGCCTATGGTCGTTATTCCTGTAGGGAATGATCAAC
CGGGAGTGGCCGCTCGTGTGGTGGCTGCTGGTTTGGGTGTTTGTGTAAAC
GCCAAAAAAATGAATGTTGGTTCTTTCCGTTCCTCTTTAAAGGAAGTGTT
GGTTGGCAGCAAATATCGTGAGCAGGCGGCAAAGGTGCGGAGGGAAATAG
AAGAAGCGGGTGGAGTGCAAAAAACCGCTGATATAGCTGAGATGGTTGCA
AAGACTGGACAAGCTGTTTAG

protein sequence of Gchil6536.t1

>Gchil6536.t1 ID=Gchil6536.t1|Name=Gchil6536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=407bp
MTEIALELQRRGNQIVFIGVPDIRPKLKDFDFEVLLIGEAEFPVGYVSTS
MTMLGELHGHQALRFSSDHIAENGRAYLRDGPEIVRAANLDLLVIEQTVV
SMRTVAEAQNIPYITVCVSLISNPDPLVPPVFSHRIPSAAPISKLQTYVE
HRIEKFLTHNIFTDVHQKRKEWNLPPIRDPATSHSPYATIVQLPKSIDFP
RKHLPSTFHYIGRFSDPSGTEPLSRNVSFPFEKLDGRPIIYASLGTIVNE
TQGLSSKIVQSCKGVNAQLVLSFGNPQSFVEDEIGDAIVVPFAPQEKLVS
MSSLVITHGGNNTVTMALSYGVPMVVIPVGNDQPGVAARVVAAGLGVCVN
AKKMNVGSFRSSLKEVLVGSKYREQAAKVRREIEEAGGVQKTADIAEMVA
KTGQAV*

mRNA from alignment at tig00004390_pilon:420736..421956+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6536.t1 ID=Gchil6536.t1|Name=Gchil6536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00004390_pilon:420736..421956+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAAATTGCCCTCGAATTACAACGTCGCGGGAATCAAATCGTGTT
CATTGGAGTTCCGGACATTCGTCCAAAGCTCAAAGACTTTGACTTTGAAG
TGCTTCTCATCGGCGAAGCGGAGTTTCCTGTAGGATATGTGTCAACCTCA
ATGACAATGCTGGGGGAACTCCACGGCCACCAAGCCTTGCGTTTCAGCTC
AGACCACATCGCCGAGAATGGAAGGGCGTATCTAAGAGATGGACCAGAAA
TCGTCAGAGCTGCAAATCTGGATCTTCTGGTTATTGAACAGACTGTTGTT
TCCATGAGGACAGTTGCGGAAGCACAAAACATTCCCTACATCACAGTGTG
TGTTTCGCTTATCTCCAATCCGGATCCTCTTGTACCGCCTGTGTTTTCTC
ATCGTATTCCTTCTGCTGCACCTATATCCAAGCTTCAAACATATGTTGAA
CATCGGATAGAAAAGTTTCTTACACACAACATCTTCACCGACGTTCATCA
AAAGCGAAAGGAATGGAATCTGCCCCCGATTCGTGACCCCGCCACATCTC
ATTCTCCATATGCCACGATTGTTCAGCTCCCCAAATCAATTGATTTCCCC
AGGAAACATCTTCCCTCAACGTTTCACTACATTGGAAGATTCTCCGATCC
GTCGGGCACAGAACCGTTGAGCAGAAATGTTTCTTTTCCATTCGAGAAGC
TTGATGGTAGACCTATAATCTATGCTTCCCTCGGCACGATTGTAAACGAA
ACGCAAGGGCTGTCCTCAAAGATTGTACAATCATGCAAGGGAGTGAATGC
ACAACTGGTTCTATCATTCGGCAATCCGCAATCCTTTGTTGAGGACGAAA
TTGGCGACGCAATTGTGGTACCATTCGCACCACAGGAGAAGCTCGTATCA
ATGTCCTCTCTGGTTATTACGCATGGCGGAAACAACACTGTTACTATGGC
CTTGTCTTATGGGGTGCCTATGGTCGTTATTCCTGTAGGGAATGATCAAC
CGGGAGTGGCCGCTCGTGTGGTGGCTGCTGGTTTGGGTGTTTGTGTAAAC
GCCAAAAAAATGAATGTTGGTTCTTTCCGTTCCTCTTTAAAGGAAGTGTT
GGTTGGCAGCAAATATCGTGAGCAGGCGGCAAAGGTGCGGAGGGAAATAG
AAGAAGCGGGTGGAGTGCAAAAAACCGCTGATATAGCTGAGATGGTTGCA
AAGACTGGACAAGCTGTTTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:420736..421956+

>Gchil6536.t1 ID=Gchil6536.t1|Name=Gchil6536.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00004390_pilon:420736..421956+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAAATTGCCCTCGAATTACAACGTCGCGGGAATCAAATCGTGTT
CATTGGAGTTCCGGACATTCGTCCAAAGCTCAAAGACTTTGACTTTGAAG
TGCTTCTCATCGGCGAAGCGGAGTTTCCTGTAGGATATGTGTCAACCTCA
ATGACAATGCTGGGGGAACTCCACGGCCACCAAGCCTTGCGTTTCAGCTC
AGACCACATCGCCGAGAATGGAAGGGCGTATCTAAGAGATGGACCAGAAA
TCGTCAGAGCTGCAAATCTGGATCTTCTGGTTATTGAACAGACTGTTGTT
TCCATGAGGACAGTTGCGGAAGCACAAAACATTCCCTACATCACAGTGTG
TGTTTCGCTTATCTCCAATCCGGATCCTCTTGTACCGCCTGTGTTTTCTC
ATCGTATTCCTTCTGCTGCACCTATATCCAAGCTTCAAACATATGTTGAA
CATCGGATAGAAAAGTTTCTTACACACAACATCTTCACCGACGTTCATCA
AAAGCGAAAGGAATGGAATCTGCCCCCGATTCGTGACCCCGCCACATCTC
ATTCTCCATATGCCACGATTGTTCAGCTCCCCAAATCAATTGATTTCCCC
AGGAAACATCTTCCCTCAACGTTTCACTACATTGGAAGATTCTCCGATCC
GTCGGGCACAGAACCGTTGAGCAGAAATGTTTCTTTTCCATTCGAGAAGC
TTGATGGTAGACCTATAATCTATGCTTCCCTCGGCACGATTGTAAACGAA
ACGCAAGGGCTGTCCTCAAAGATTGTACAATCATGCAAGGGAGTGAATGC
ACAACTGGTTCTATCATTCGGCAATCCGCAATCCTTTGTTGAGGACGAAA
TTGGCGACGCAATTGTGGTACCATTCGCACCACAGGAGAAGCTCGTATCA
ATGTCCTCTCTGGTTATTACGCATGGCGGAAACAACACTGTTACTATGGC
CTTGTCTTATGGGGTGCCTATGGTCGTTATTCCTGTAGGGAATGATCAAC
CGGGAGTGGCCGCTCGTGTGGTGGCTGCTGGTTTGGGTGTTTGTGTAAAC
GCCAAAAAAATGAATGTTGGTTCTTTCCGTTCCTCTTTAAAGGAAGTGTT
GGTTGGCAGCAAATATCGTGAGCAGGCGGCAAAGGTGCGGAGGGAAATAG
AAGAAGCGGGTGGAGTGCAAAAAACCGCTGATATAGCTGAGATGGTTGCA
AAGACTGGACAAGCTGTTTAG