Gchil6528.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6528.t1
Unique NameGchil6528.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:398442..399245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008612531.1
Preferred nameTMX2
PFAMsThioredoxin
Max annot lvl2759|Eukaryota
KEGG koko:K20030
Evalue2.11e-29
EggNOG OGsKOG0914@1|root,KOG0914@2759|Eukaryota
EC2.3.1.225
Descriptionthioredoxin-related transmembrane protein
COG categoryS
BRITEko00000,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6528Gchil6528Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 398442..399245 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6528.t1.start1Gchil6528.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 398442..398444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6528.t1.CDS1Gchil6528.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 398442..399245 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6528.t1.exon1Gchil6528.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 398442..399245 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6528.t1.stop1Gchil6528.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 399243..399245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6528.t1Gchil6528.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 398442..399245 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6528.t1 ID=Gchil6528.t1|Name=Gchil6528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=268bp
MVDSRFLHPYYLLNVFMVLAYAGLRAKRLHPAEMGAKDMFGITREQQVYF
CVGLMLVTRALSAPTMDAYLSSAFMFIRVAIVLLLWYMDKQLVAVFLALW
TMIYAVCPQPRFKLPKSILTLNNVTFNDRIARNNHKTIYVLWCHATWSAR
CSQLVPVLASLAKTYKHPRVRFARVDISKFPALSDTLSVSVSPASKQLPT
VICYKQGKEVARIPQMDQSGNLPNKWSRGFTAAHVAEALDLNTHFNTAKQ
WEQQARQKYRQSQKKSN*
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spliced messenger RNA

>Gchil6528.t1 ID=Gchil6528.t1|Name=Gchil6528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004390_pilon:398442..399245+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACAGTAGGTTTCTTCATCCCTACTACCTGCTCAATGTCTTCAT
GGTGCTGGCCTACGCTGGTCTGCGCGCAAAGCGACTTCATCCCGCCGAAA
TGGGCGCCAAGGACATGTTCGGCATCACCCGCGAGCAGCAGGTATACTTT
TGCGTCGGCCTCATGTTGGTCACACGCGCGCTTTCAGCCCCAACCATGGA
CGCCTATTTATCCTCCGCCTTCATGTTCATTCGAGTTGCTATAGTCCTTT
TGCTCTGGTACATGGACAAGCAACTTGTCGCCGTCTTCCTTGCCTTGTGG
ACAATGATATATGCTGTTTGTCCTCAACCGCGATTTAAACTCCCCAAGTC
CATCCTCACCCTCAACAACGTCACCTTCAATGACCGAATTGCCCGCAACA
ACCACAAGACCATCTACGTGTTGTGGTGTCATGCCACATGGTCCGCCAGA
TGTTCCCAACTCGTCCCCGTGCTCGCGTCGCTCGCCAAAACGTACAAACA
CCCGCGCGTGCGATTTGCGCGAGTCGACATTTCCAAGTTTCCAGCTCTGT
CGGATACGCTCTCCGTTTCTGTCTCTCCCGCATCCAAGCAGCTTCCAACA
GTCATTTGCTACAAGCAAGGAAAGGAGGTGGCCAGGATTCCCCAAATGGA
CCAAAGCGGTAACCTGCCCAATAAATGGTCAAGAGGTTTCACTGCCGCCC
ACGTTGCGGAAGCTCTTGACCTCAACACACATTTCAACACCGCCAAACAA
TGGGAGCAACAAGCACGTCAAAAATACCGCCAAAGCCAAAAGAAATCAAA
CTGA
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protein sequence of Gchil6528.t1

>Gchil6528.t1 ID=Gchil6528.t1|Name=Gchil6528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=268bp
MVDSRFLHPYYLLNVFMVLAYAGLRAKRLHPAEMGAKDMFGITREQQVYF
CVGLMLVTRALSAPTMDAYLSSAFMFIRVAIVLLLWYMDKQLVAVFLALW
TMIYAVCPQPRFKLPKSILTLNNVTFNDRIARNNHKTIYVLWCHATWSAR
CSQLVPVLASLAKTYKHPRVRFARVDISKFPALSDTLSVSVSPASKQLPT
VICYKQGKEVARIPQMDQSGNLPNKWSRGFTAAHVAEALDLNTHFNTAKQ
WEQQARQKYRQSQKKSN*
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mRNA from alignment at tig00004390_pilon:398442..399245+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6528.t1 ID=Gchil6528.t1|Name=Gchil6528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=804bp|location=Sequence derived from alignment at tig00004390_pilon:398442..399245+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGACAGTAGGTTTCTTCATCCCTACTACCTGCTCAATGTCTTCAT
GGTGCTGGCCTACGCTGGTCTGCGCGCAAAGCGACTTCATCCCGCCGAAA
TGGGCGCCAAGGACATGTTCGGCATCACCCGCGAGCAGCAGGTATACTTT
TGCGTCGGCCTCATGTTGGTCACACGCGCGCTTTCAGCCCCAACCATGGA
CGCCTATTTATCCTCCGCCTTCATGTTCATTCGAGTTGCTATAGTCCTTT
TGCTCTGGTACATGGACAAGCAACTTGTCGCCGTCTTCCTTGCCTTGTGG
ACAATGATATATGCTGTTTGTCCTCAACCGCGATTTAAACTCCCCAAGTC
CATCCTCACCCTCAACAACGTCACCTTCAATGACCGAATTGCCCGCAACA
ACCACAAGACCATCTACGTGTTGTGGTGTCATGCCACATGGTCCGCCAGA
TGTTCCCAACTCGTCCCCGTGCTCGCGTCGCTCGCCAAAACGTACAAACA
CCCGCGCGTGCGATTTGCGCGAGTCGACATTTCCAAGTTTCCAGCTCTGT
CGGATACGCTCTCCGTTTCTGTCTCTCCCGCATCCAAGCAGCTTCCAACA
GTCATTTGCTACAAGCAAGGAAAGGAGGTGGCCAGGATTCCCCAAATGGA
CCAAAGCGGTAACCTGCCCAATAAATGGTCAAGAGGTTTCACTGCCGCCC
ACGTTGCGGAAGCTCTTGACCTCAACACACATTTCAACACCGCCAAACAA
TGGGAGCAACAAGCACGTCAAAAATACCGCCAAAGCCAAAAGAAATCAAA
CTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:398442..399245+

>Gchil6528.t1 ID=Gchil6528.t1|Name=Gchil6528.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=804bp|location=Sequence derived from alignment at tig00004390_pilon:398442..399245+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGACAGTAGGTTTCTTCATCCCTACTACCTGCTCAATGTCTTCAT
GGTGCTGGCCTACGCTGGTCTGCGCGCAAAGCGACTTCATCCCGCCGAAA
TGGGCGCCAAGGACATGTTCGGCATCACCCGCGAGCAGCAGGTATACTTT
TGCGTCGGCCTCATGTTGGTCACACGCGCGCTTTCAGCCCCAACCATGGA
CGCCTATTTATCCTCCGCCTTCATGTTCATTCGAGTTGCTATAGTCCTTT
TGCTCTGGTACATGGACAAGCAACTTGTCGCCGTCTTCCTTGCCTTGTGG
ACAATGATATATGCTGTTTGTCCTCAACCGCGATTTAAACTCCCCAAGTC
CATCCTCACCCTCAACAACGTCACCTTCAATGACCGAATTGCCCGCAACA
ACCACAAGACCATCTACGTGTTGTGGTGTCATGCCACATGGTCCGCCAGA
TGTTCCCAACTCGTCCCCGTGCTCGCGTCGCTCGCCAAAACGTACAAACA
CCCGCGCGTGCGATTTGCGCGAGTCGACATTTCCAAGTTTCCAGCTCTGT
CGGATACGCTCTCCGTTTCTGTCTCTCCCGCATCCAAGCAGCTTCCAACA
GTCATTTGCTACAAGCAAGGAAAGGAGGTGGCCAGGATTCCCCAAATGGA
CCAAAGCGGTAACCTGCCCAATAAATGGTCAAGAGGTTTCACTGCCGCCC
ACGTTGCGGAAGCTCTTGACCTCAACACACATTTCAACACCGCCAAACAA
TGGGAGCAACAAGCACGTCAAAAATACCGCCAAAGCCAAAAGAAATCAAA
CTGA
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