Gchil6527.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6527.t1
Unique NameGchil6527.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:397123..398016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708578.1
Max annot lvl130081.XP_005708578.1|-
Evalue5.57e-73
EggNOG OGsCOG0637@1|root,KOG2914@2759|Eukaryota
Descriptionpseudouridine 5'-phosphatase activity
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6527Gchil6527Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 397123..398016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6527.t1.start1Gchil6527.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 397123..397125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6527.t1.CDS1Gchil6527.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 397123..398016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6527.t1.exon1Gchil6527.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 397123..398016 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6527.t1.stop1Gchil6527.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 398014..398016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6527.t1Gchil6527.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 397123..398016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6527.t1 ID=Gchil6527.t1|Name=Gchil6527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MAGAFVTPTASSLFSARRARVATPRACAPASSSTSSALSTPPRASVAQHA
LIFDCDGVIVESEELHRISYNQCWKQNHLRFEWSVPFYEMLQNAVGGGKE
KMRWYFDRYGWPMHVAASPHDRQQFIARLHVEKTALYQQLVRDGAATARP
GVLRLMDEAHVRGVKLAVCSAANADAVRLVLDTLLGDARLAYLDLVLAGD
VVSRKKPHPMIYNLARDTLAVQPHNCVVIEDSQIGLRAALDAHMNVVITH
TPYTASQSFEGATAVYASLGDPDTHAPHQLVTIDTLFPRLAPLSSHP*
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spliced messenger RNA

>Gchil6527.t1 ID=Gchil6527.t1|Name=Gchil6527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004390_pilon:397123..398016+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGCGTTTGTGACGCCCACCGCGTCATCCTTGTTCTCTgcgcg
tcgcgcgcgcgtcgcaacgccgcgtgcgtgcgcacccgcgTCCTCTTCAA
CGTCCAGCGCGCTGTCTACGCCCCCGCGTGCTTCCGTCGCACAACACGCC
CTCATCTTCGACTGCGACGGCGTCATCGTGGAGAGCGAGGAGTTGCATCG
CATCAGTTACAACCAATGTTGGAAACAAAACCATCTGCGTTTCGAGTGGA
GCGTGCCGTTTTATGAAATGTTGCAGAACGCCGTGGGCGGTGGAAAGGAG
AAGATGCGCTGGTATTTTGATCGTTATGGTTGGCCTATGCACGTTGCTGC
ATCGCCGCATGATCGTCAACAATTTATCGCCCGCTTGCACGTCGAGAAGA
CCGCGCTGTATCAACAGCTCGTGCGCGACGGCGCCGCAACCGCTAGACCA
GGCGTGTTGCGTCTCATGGATGAGGCGCATGTTCGCGGTGTAAAGCTGGC
CGTGTGTTCTGCCGCCAATGCCGACGCCGTGCGTCTCGTGCTTGACACGC
TGTTGGGCGATGCTCGTCTCGCGTACTTGGATCTTGTGTTGGCTGGTGAC
GTGGTCAGTAGAAAGAAGCCACACCCCATGATCTACAACCTTGCACGAGA
TACGCTCGCCGTGCAACCGCACAACTGCGTCGTCATTGAGGACAGTCAAA
TCGGTCTGCGCGCCGCGCTGGATGCGCACATGAACGTCGTCATCACCCAC
ACCCCTTACACTGCGTCGCAGTCCTTTGAGGGCGCCACCGCTGTGTACGC
CTCCTTGGGTGACCCCGACACTCATGCGCCGCATCAGCTCGTCACCATCG
ATACGTTGTTCCCCCGACTCGCGCCCCTTTCGTCACACCCGTAA
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protein sequence of Gchil6527.t1

>Gchil6527.t1 ID=Gchil6527.t1|Name=Gchil6527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MAGAFVTPTASSLFSARRARVATPRACAPASSSTSSALSTPPRASVAQHA
LIFDCDGVIVESEELHRISYNQCWKQNHLRFEWSVPFYEMLQNAVGGGKE
KMRWYFDRYGWPMHVAASPHDRQQFIARLHVEKTALYQQLVRDGAATARP
GVLRLMDEAHVRGVKLAVCSAANADAVRLVLDTLLGDARLAYLDLVLAGD
VVSRKKPHPMIYNLARDTLAVQPHNCVVIEDSQIGLRAALDAHMNVVITH
TPYTASQSFEGATAVYASLGDPDTHAPHQLVTIDTLFPRLAPLSSHP*
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mRNA from alignment at tig00004390_pilon:397123..398016+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6527.t1 ID=Gchil6527.t1|Name=Gchil6527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00004390_pilon:397123..398016+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGCGCGTTTGTGACGCCCACCGCGTCATCCTTGTTCTCTgcgcg
tcgcgcgcgcgtcgcaacgccgcgtgcgtgcgcacccgcgTCCTCTTCAA
CGTCCAGCGCGCTGTCTACGCCCCCGCGTGCTTCCGTCGCACAACACGCC
CTCATCTTCGACTGCGACGGCGTCATCGTGGAGAGCGAGGAGTTGCATCG
CATCAGTTACAACCAATGTTGGAAACAAAACCATCTGCGTTTCGAGTGGA
GCGTGCCGTTTTATGAAATGTTGCAGAACGCCGTGGGCGGTGGAAAGGAG
AAGATGCGCTGGTATTTTGATCGTTATGGTTGGCCTATGCACGTTGCTGC
ATCGCCGCATGATCGTCAACAATTTATCGCCCGCTTGCACGTCGAGAAGA
CCGCGCTGTATCAACAGCTCGTGCGCGACGGCGCCGCAACCGCTAGACCA
GGCGTGTTGCGTCTCATGGATGAGGCGCATGTTCGCGGTGTAAAGCTGGC
CGTGTGTTCTGCCGCCAATGCCGACGCCGTGCGTCTCGTGCTTGACACGC
TGTTGGGCGATGCTCGTCTCGCGTACTTGGATCTTGTGTTGGCTGGTGAC
GTGGTCAGTAGAAAGAAGCCACACCCCATGATCTACAACCTTGCACGAGA
TACGCTCGCCGTGCAACCGCACAACTGCGTCGTCATTGAGGACAGTCAAA
TCGGTCTGCGCGCCGCGCTGGATGCGCACATGAACGTCGTCATCACCCAC
ACCCCTTACACTGCGTCGCAGTCCTTTGAGGGCGCCACCGCTGTGTACGC
CTCCTTGGGTGACCCCGACACTCATGCGCCGCATCAGCTCGTCACCATCG
ATACGTTGTTCCCCCGACTCGCGCCCCTTTCGTCACACCCGTAA
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Coding sequence (CDS) from alignment at tig00004390_pilon:397123..398016+

>Gchil6527.t1 ID=Gchil6527.t1|Name=Gchil6527.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00004390_pilon:397123..398016+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGGCGCGTTTGTGACGCCCACCGCGTCATCCTTGTTCTCTgcgcg
tcgcgcgcgcgtcgcaacgccgcgtgcgtgcgcacccgcgTCCTCTTCAA
CGTCCAGCGCGCTGTCTACGCCCCCGCGTGCTTCCGTCGCACAACACGCC
CTCATCTTCGACTGCGACGGCGTCATCGTGGAGAGCGAGGAGTTGCATCG
CATCAGTTACAACCAATGTTGGAAACAAAACCATCTGCGTTTCGAGTGGA
GCGTGCCGTTTTATGAAATGTTGCAGAACGCCGTGGGCGGTGGAAAGGAG
AAGATGCGCTGGTATTTTGATCGTTATGGTTGGCCTATGCACGTTGCTGC
ATCGCCGCATGATCGTCAACAATTTATCGCCCGCTTGCACGTCGAGAAGA
CCGCGCTGTATCAACAGCTCGTGCGCGACGGCGCCGCAACCGCTAGACCA
GGCGTGTTGCGTCTCATGGATGAGGCGCATGTTCGCGGTGTAAAGCTGGC
CGTGTGTTCTGCCGCCAATGCCGACGCCGTGCGTCTCGTGCTTGACACGC
TGTTGGGCGATGCTCGTCTCGCGTACTTGGATCTTGTGTTGGCTGGTGAC
GTGGTCAGTAGAAAGAAGCCACACCCCATGATCTACAACCTTGCACGAGA
TACGCTCGCCGTGCAACCGCACAACTGCGTCGTCATTGAGGACAGTCAAA
TCGGTCTGCGCGCCGCGCTGGATGCGCACATGAACGTCGTCATCACCCAC
ACCCCTTACACTGCGTCGCAGTCCTTTGAGGGCGCCACCGCTGTGTACGC
CTCCTTGGGTGACCCCGACACTCATGCGCCGCATCAGCTCGTCACCATCG
ATACGTTGTTCCCCCGACTCGCGCCCCTTTCGTCACACCCGTAA
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