Gchil652.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil652.t2
Unique Name	Gchil652.t2
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	537

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:747108..748718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil652	Gchil652	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 747108..748718 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil652.t2.start1	Gchil652.t2.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 747108..747110 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil652.t2.CDS1	Gchil652.t2.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 747108..748718 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil652.t2.exon1	Gchil652.t2.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 747108..748718 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil652.t2.stop1	Gchil652.t2.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 748716..748718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil652.t2	Gchil652.t2	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 747108..748718 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:747108..748718+
coding sequence from alignment at tig00004380_pilon:747108..748718+

mRNA sequence

>Gchil652.t2 ID=Gchil652.t2|Name=Gchil652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=537bp
MAATTALLPDVEPLCRILAHDWVWHFFFESDRHHADMFTLAVEDRFSMLF
DLSIRTEHTSDPHANAFAVRERHRALFLPTFSNGPVTVGFGVCDRITSSL
TLACRQRYIGKVARDDSRAVVYFLAVDPAIDLLEITTYSMFSATTRAHAF
SIFRMQQFMNAVQCIRNGPFCNPRVAAALVYYYEAFETCPCVVCHAADPT
LCCCQLPFSTKKHPRDTVTDINNMKLYMGTFSGVAKLTLCSNGAVVFSSS
YESHSFINFHNDPQIKRELIEWAMTHIVQERRQDPLTLVMAEAATLKSRF
VTATDTFMLASIAESILSKPVRFDHTPPPQHQPLPLSLPMSDASMDAFVN
TLEPSTGISAGFGTAVTHLNALSQDPELQQLLSQQQSFNSTNMLSDCSES
ISLDALWQTTPPPPLDSPGVHAQTGLDSAICSQNANQVVPSATRRLSVLA
PAPCVQSAIPGAEQTKTHMDEERRRRIELRKARNRESAQRSNLRKKMQLQ
QLKDELEAAAAKEACLRAREKTLRKENMRLRTAVMR*

spliced messenger RNA

>Gchil652.t2 ID=Gchil652.t2|Name=Gchil652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004380_pilon:747108..748718+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCACCACCGCCCTGCTCCCAGACGTGGAGCCGCTGTGCCGCAT
CCTCGCGCACGACTGGGTGTGGCACTTTTTCTTCGAGTCTGACCGCCATC
ACGCCGACATGTTCACCCTCGCCGTCGAGGATCGTTTCTCCATGCTCTTC
GACCTCTCCATCCGCACAGAACATACCTCAGATCCGCACGCAAACGCCTT
CGCCGTGCGCGAGCGTCACCGCGCCCTCTTCCTCCCCACCTTCTCCAACG
GGCCCGTCACTGTTGGCTTCGGCGTTTGCGACCGCATCACATCCTCCCTC
ACCCTCGCCTGCCGCCAGCGCTACATCGGCAAGGTTGCCCGCGACGACTC
GCGCGCCGTCGTGTACTTTCTCGCCGTGGACCCTGCCATCGATCTTCTGG
AGATCACCACTTACTCCATGTTCAGTGCCACCACGCGCGCCCACGCCTTC
TCCATTTTCCGCATGCAACAATTCATGAACGCCGTCCAGTGCATCCGCAA
TGGTCCCTTTTGCAACCCCCGCGTCGCCGCCGCTCTCGTCTACTACTACG
AGGCCTTTGAAACTTGCCCTTGTGTCGTTTGCCACGCCGCCGACCCCACC
TTGTGTTGTTGTCAGCTTCCTTTTTCCACCAAGAAGCACCCGCGCGATAC
TGTCACTGACATCAATAACATGAAGCTGTACATGGGCACCTTCAGCGGCG
TCGCCAAACTCACCCTTTGTTCCAACGGTGCTGTTGTCTTTTCATCCTCG
TACGAATCCCACTCCTTCATCAATTTCCACAACGACCCGCAAATAAAACG
CGAGCTTATCGAGTGGGCCATGACACACATCGTTCAGGAGCGCCGACAAG
ATCCCCTCACGCTCGTCATGGCCGAGGCTGCCACCCTCAAGTCGCGCTTC
GTCACTGCCACCGACACCTTCATGCTGGCCTCCATCGCTGAGTCCATCCT
GTCCAAACCCGTCCGCTTCGACCATACACCCCCGCCGCAGCATCAGCCGC
TTCCATTGTCGCTTCCGATGTCGGATGCTTCCATGGACGCTTTCGTCAAC
ACTCTGGAGCCCAGCACAGGCATTAGTGCAGGCTTCGGTACTGCCGTTAC
TCACCTCAACGCTCTCTCTCAGGACCCGGAGCTGCAACAGCTATTGAGTC
AGCAACAGTCGTTCAATTCCACCAATATGTTGAGCGATTGCAGTGAATCC
ATATCGCTAGATGCGCTGTGGCAAACCACACCCCCACCGCCACTAGATTC
ACCAGGTGTGCACGCACAAACTGGCTTGGATTCCGCCATTTGTTCACAGA
ATGCGAATCAAGTGGTTCCTAGCGCAACACGACGGTTGTCTGTTTTGGCT
CCTGCGCCATGTGTGCAGAGCGCGATTCCCGGTGCAGAACAGACCAAGAC
GCACATGGATGAAGAACGGAGAAGACGGATTGAACTGCGGAAGGCGAGGA
ACCGAGAAAGTGCGCAGAGAAGTAACCTTCGAAAAAAGATGCAGCTGCAG
CAGCTAAAGGATGAGCTTGAGGCGGCTGCAGCGAAGGAAGCTTGTTTGCG
CGCGAGAGAGAAGACCCTGAGGAAAGAAAATATGCGCTTGAGGACTGCAG
TGATGAGATGA

protein sequence of Gchil652.t2

>Gchil652.t2 ID=Gchil652.t2|Name=Gchil652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=537bp
MAATTALLPDVEPLCRILAHDWVWHFFFESDRHHADMFTLAVEDRFSMLF
DLSIRTEHTSDPHANAFAVRERHRALFLPTFSNGPVTVGFGVCDRITSSL
TLACRQRYIGKVARDDSRAVVYFLAVDPAIDLLEITTYSMFSATTRAHAF
SIFRMQQFMNAVQCIRNGPFCNPRVAAALVYYYEAFETCPCVVCHAADPT
LCCCQLPFSTKKHPRDTVTDINNMKLYMGTFSGVAKLTLCSNGAVVFSSS
YESHSFINFHNDPQIKRELIEWAMTHIVQERRQDPLTLVMAEAATLKSRF
VTATDTFMLASIAESILSKPVRFDHTPPPQHQPLPLSLPMSDASMDAFVN
TLEPSTGISAGFGTAVTHLNALSQDPELQQLLSQQQSFNSTNMLSDCSES
ISLDALWQTTPPPPLDSPGVHAQTGLDSAICSQNANQVVPSATRRLSVLA
PAPCVQSAIPGAEQTKTHMDEERRRRIELRKARNRESAQRSNLRKKMQLQ
QLKDELEAAAAKEACLRAREKTLRKENMRLRTAVMR*

mRNA from alignment at tig00004380_pilon:747108..748718+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil652.t2 ID=Gchil652.t2|Name=Gchil652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1611bp|location=Sequence derived from alignment at tig00004380_pilon:747108..748718+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCACCACCGCCCTGCTCCCAGACGTGGAGCCGCTGTGCCGCAT
CCTCGCGCACGACTGGGTGTGGCACTTTTTCTTCGAGTCTGACCGCCATC
ACGCCGACATGTTCACCCTCGCCGTCGAGGATCGTTTCTCCATGCTCTTC
GACCTCTCCATCCGCACAGAACATACCTCAGATCCGCACGCAAACGCCTT
CGCCGTGCGCGAGCGTCACCGCGCCCTCTTCCTCCCCACCTTCTCCAACG
GGCCCGTCACTGTTGGCTTCGGCGTTTGCGACCGCATCACATCCTCCCTC
ACCCTCGCCTGCCGCCAGCGCTACATCGGCAAGGTTGCCCGCGACGACTC
GCGCGCCGTCGTGTACTTTCTCGCCGTGGACCCTGCCATCGATCTTCTGG
AGATCACCACTTACTCCATGTTCAGTGCCACCACGCGCGCCCACGCCTTC
TCCATTTTCCGCATGCAACAATTCATGAACGCCGTCCAGTGCATCCGCAA
TGGTCCCTTTTGCAACCCCCGCGTCGCCGCCGCTCTCGTCTACTACTACG
AGGCCTTTGAAACTTGCCCTTGTGTCGTTTGCCACGCCGCCGACCCCACC
TTGTGTTGTTGTCAGCTTCCTTTTTCCACCAAGAAGCACCCGCGCGATAC
TGTCACTGACATCAATAACATGAAGCTGTACATGGGCACCTTCAGCGGCG
TCGCCAAACTCACCCTTTGTTCCAACGGTGCTGTTGTCTTTTCATCCTCG
TACGAATCCCACTCCTTCATCAATTTCCACAACGACCCGCAAATAAAACG
CGAGCTTATCGAGTGGGCCATGACACACATCGTTCAGGAGCGCCGACAAG
ATCCCCTCACGCTCGTCATGGCCGAGGCTGCCACCCTCAAGTCGCGCTTC
GTCACTGCCACCGACACCTTCATGCTGGCCTCCATCGCTGAGTCCATCCT
GTCCAAACCCGTCCGCTTCGACCATACACCCCCGCCGCAGCATCAGCCGC
TTCCATTGTCGCTTCCGATGTCGGATGCTTCCATGGACGCTTTCGTCAAC
ACTCTGGAGCCCAGCACAGGCATTAGTGCAGGCTTCGGTACTGCCGTTAC
TCACCTCAACGCTCTCTCTCAGGACCCGGAGCTGCAACAGCTATTGAGTC
AGCAACAGTCGTTCAATTCCACCAATATGTTGAGCGATTGCAGTGAATCC
ATATCGCTAGATGCGCTGTGGCAAACCACACCCCCACCGCCACTAGATTC
ACCAGGTGTGCACGCACAAACTGGCTTGGATTCCGCCATTTGTTCACAGA
ATGCGAATCAAGTGGTTCCTAGCGCAACACGACGGTTGTCTGTTTTGGCT
CCTGCGCCATGTGTGCAGAGCGCGATTCCCGGTGCAGAACAGACCAAGAC
GCACATGGATGAAGAACGGAGAAGACGGATTGAACTGCGGAAGGCGAGGA
ACCGAGAAAGTGCGCAGAGAAGTAACCTTCGAAAAAAGATGCAGCTGCAG
CAGCTAAAGGATGAGCTTGAGGCGGCTGCAGCGAAGGAAGCTTGTTTGCG
CGCGAGAGAGAAGACCCTGAGGAAAGAAAATATGCGCTTGAGGACTGCAG
TGATGAGATGA

Coding sequence (CDS) from alignment at tig00004380_pilon:747108..748718+

>Gchil652.t2 ID=Gchil652.t2|Name=Gchil652.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1611bp|location=Sequence derived from alignment at tig00004380_pilon:747108..748718+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCACCACCGCCCTGCTCCCAGACGTGGAGCCGCTGTGCCGCAT
CCTCGCGCACGACTGGGTGTGGCACTTTTTCTTCGAGTCTGACCGCCATC
ACGCCGACATGTTCACCCTCGCCGTCGAGGATCGTTTCTCCATGCTCTTC
GACCTCTCCATCCGCACAGAACATACCTCAGATCCGCACGCAAACGCCTT
CGCCGTGCGCGAGCGTCACCGCGCCCTCTTCCTCCCCACCTTCTCCAACG
GGCCCGTCACTGTTGGCTTCGGCGTTTGCGACCGCATCACATCCTCCCTC
ACCCTCGCCTGCCGCCAGCGCTACATCGGCAAGGTTGCCCGCGACGACTC
GCGCGCCGTCGTGTACTTTCTCGCCGTGGACCCTGCCATCGATCTTCTGG
AGATCACCACTTACTCCATGTTCAGTGCCACCACGCGCGCCCACGCCTTC
TCCATTTTCCGCATGCAACAATTCATGAACGCCGTCCAGTGCATCCGCAA
TGGTCCCTTTTGCAACCCCCGCGTCGCCGCCGCTCTCGTCTACTACTACG
AGGCCTTTGAAACTTGCCCTTGTGTCGTTTGCCACGCCGCCGACCCCACC
TTGTGTTGTTGTCAGCTTCCTTTTTCCACCAAGAAGCACCCGCGCGATAC
TGTCACTGACATCAATAACATGAAGCTGTACATGGGCACCTTCAGCGGCG
TCGCCAAACTCACCCTTTGTTCCAACGGTGCTGTTGTCTTTTCATCCTCG
TACGAATCCCACTCCTTCATCAATTTCCACAACGACCCGCAAATAAAACG
CGAGCTTATCGAGTGGGCCATGACACACATCGTTCAGGAGCGCCGACAAG
ATCCCCTCACGCTCGTCATGGCCGAGGCTGCCACCCTCAAGTCGCGCTTC
GTCACTGCCACCGACACCTTCATGCTGGCCTCCATCGCTGAGTCCATCCT
GTCCAAACCCGTCCGCTTCGACCATACACCCCCGCCGCAGCATCAGCCGC
TTCCATTGTCGCTTCCGATGTCGGATGCTTCCATGGACGCTTTCGTCAAC
ACTCTGGAGCCCAGCACAGGCATTAGTGCAGGCTTCGGTACTGCCGTTAC
TCACCTCAACGCTCTCTCTCAGGACCCGGAGCTGCAACAGCTATTGAGTC
AGCAACAGTCGTTCAATTCCACCAATATGTTGAGCGATTGCAGTGAATCC
ATATCGCTAGATGCGCTGTGGCAAACCACACCCCCACCGCCACTAGATTC
ACCAGGTGTGCACGCACAAACTGGCTTGGATTCCGCCATTTGTTCACAGA
ATGCGAATCAAGTGGTTCCTAGCGCAACACGACGGTTGTCTGTTTTGGCT
CCTGCGCCATGTGTGCAGAGCGCGATTCCCGGTGCAGAACAGACCAAGAC
GCACATGGATGAAGAACGGAGAAGACGGATTGAACTGCGGAAGGCGAGGA
ACCGAGAAAGTGCGCAGAGAAGTAACCTTCGAAAAAAGATGCAGCTGCAG
CAGCTAAAGGATGAGCTTGAGGCGGCTGCAGCGAAGGAAGCTTGTTTGCG
CGCGAGAGAGAAGACCCTGAGGAAAGAAAATATGCGCTTGAGGACTGCAG
TGATGAGATGA