Gchil6515.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6515.t1
Unique NameGchil6515.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:331791..332669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog498742.BSPA14S_0248
Preferred namepcs
PFAMsCDP-OH_P_transf
Max annot lvl2|Bacteria
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K01004,ko:K17103
KEGG ReactionR01800,R05794
KEGG Pathwayko00260,ko00564,ko01100,ko01110,map00260,map00564,map01100,map01110
KEGG ModuleM00093
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016740,GO:0016772,GO:0016780,GO:0019637,GO:0042802,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0050520,GO:0071704,GO:0090407,GO:1901576
Evalue2.14e-38
EggNOG OGsCOG1183@1|root,COG1183@2|Bacteria
EC2.7.8.24,2.7.8.8
Descriptionphosphatidylcholine synthase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6515Gchil6515Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 331791..332669 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6515.t1.stop1Gchil6515.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 331791..331793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6515.t1.CDS1Gchil6515.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 331791..332669 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6515.t1.exon1Gchil6515.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 331791..332669 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6515.t1.start1Gchil6515.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 332667..332669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6515.t1Gchil6515.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 331791..332669 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6515.t1 ID=Gchil6515.t1|Name=Gchil6515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=293bp
MELRSRTIAKSDASSTATSEIAFEKTGAAFEKDAEARTTPRRSGSGRGRR
RAPDSYPWYQIVAAWMVHLFTASGLLVNMFALLHAIFGQSDFNLFAKLNW
LAIFIDAVDGTFARAVNIKKVIPTYDGAMLDNIIDFQTFSVLPALCIVVF
ELVQGKVAQYAAAVAILLASAYQFCQTIAKTPDAFVGFPSYWNIVVFYIY
YLKPTTVVSMVLIFSCAVLSFIPVHFIYPTRTKEFHYVNHIGAYIWSGLM
MVPTMQPESRYVKPALYASFVYVMYYFALSMALDVRRRKGQA*
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spliced messenger RNA

>Gchil6515.t1 ID=Gchil6515.t1|Name=Gchil6515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004390_pilon:331791..332669- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTCGTAGTCGCACCATCGCCAAATCGGATGCCTCTTCCACGGC
AACTTCCGAAATAGCGTTCGAGAAAACGGGCGCCGCGTTCGAAAAGGACG
CTGAGGCTCGAACAACGCCGCGTCGATCGGGGTCCGGTCGCGGACGCCGC
CGCGCCCCAGACTCGTACCCTTGGTACCAAATCGTGGCCGCCTGGATGGT
GCATTTATTCACCGCGTCGGGATTGCTTGTGAATATGTTCGCGTTACTGC
ACGCCATATTCGGCCAATCTGATTTTAATTTGTTTGCCAAGCTCAACTGG
TTGGCCATCTTCATCGATGCTGTGGACGGAACGTTTGCGAGAGCGGTTAA
TATTAAGAAGGTTATACCCACGTACGACGGCGCGATGCTTGACAACATTA
TCGATTTTCAAACATTCTCGGTTTTGCCCGCGTTGTGCATCGTCGTGTTT
GAGTTGGTGCAGGGAAAAGTCGCTCAGTATGCGGCCGCCGTAGCCATTCT
GCTCGCGTCAGCGTACCAGTTTTGTCAAACTATCGCCAAAACGCCCGACG
CGTTTGTGGGCTTTCCGAGTTATTGGAACATTGTGGTGTTCTACATATAT
TATTTGAAACCCACAACTGTCGTTTCGATGGTGCTCATTTTCAGCTGTGC
CGTGCTGTCGTTCATTCCTGTACATTTCATCTATCCAACGCGTACAAAGG
AGTTTCACTATGTGAACCACATCGGAGCGTACATTTGGTCCGGGCTAATG
ATGGTGCCAACGATGCAGCCTGAGTCGCGCTACGTGAAACCTGCGTTGTA
CGCGTCGTTCGTGTACGTGATGTACTATTTTGCGCTTTCAATGGCGCTGG
ACGTTCGTCGACGGAAAGGGCAAGCATGA
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protein sequence of Gchil6515.t1

>Gchil6515.t1 ID=Gchil6515.t1|Name=Gchil6515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=293bp
MELRSRTIAKSDASSTATSEIAFEKTGAAFEKDAEARTTPRRSGSGRGRR
RAPDSYPWYQIVAAWMVHLFTASGLLVNMFALLHAIFGQSDFNLFAKLNW
LAIFIDAVDGTFARAVNIKKVIPTYDGAMLDNIIDFQTFSVLPALCIVVF
ELVQGKVAQYAAAVAILLASAYQFCQTIAKTPDAFVGFPSYWNIVVFYIY
YLKPTTVVSMVLIFSCAVLSFIPVHFIYPTRTKEFHYVNHIGAYIWSGLM
MVPTMQPESRYVKPALYASFVYVMYYFALSMALDVRRRKGQA*
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mRNA from alignment at tig00004390_pilon:331791..332669-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6515.t1 ID=Gchil6515.t1|Name=Gchil6515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00004390_pilon:331791..332669- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACTTCGTAGTCGCACCATCGCCAAATCGGATGCCTCTTCCACGGC
AACTTCCGAAATAGCGTTCGAGAAAACGGGCGCCGCGTTCGAAAAGGACG
CTGAGGCTCGAACAACGCCGCGTCGATCGGGGTCCGGTCGCGGACGCCGC
CGCGCCCCAGACTCGTACCCTTGGTACCAAATCGTGGCCGCCTGGATGGT
GCATTTATTCACCGCGTCGGGATTGCTTGTGAATATGTTCGCGTTACTGC
ACGCCATATTCGGCCAATCTGATTTTAATTTGTTTGCCAAGCTCAACTGG
TTGGCCATCTTCATCGATGCTGTGGACGGAACGTTTGCGAGAGCGGTTAA
TATTAAGAAGGTTATACCCACGTACGACGGCGCGATGCTTGACAACATTA
TCGATTTTCAAACATTCTCGGTTTTGCCCGCGTTGTGCATCGTCGTGTTT
GAGTTGGTGCAGGGAAAAGTCGCTCAGTATGCGGCCGCCGTAGCCATTCT
GCTCGCGTCAGCGTACCAGTTTTGTCAAACTATCGCCAAAACGCCCGACG
CGTTTGTGGGCTTTCCGAGTTATTGGAACATTGTGGTGTTCTACATATAT
TATTTGAAACCCACAACTGTCGTTTCGATGGTGCTCATTTTCAGCTGTGC
CGTGCTGTCGTTCATTCCTGTACATTTCATCTATCCAACGCGTACAAAGG
AGTTTCACTATGTGAACCACATCGGAGCGTACATTTGGTCCGGGCTAATG
ATGGTGCCAACGATGCAGCCTGAGTCGCGCTACGTGAAACCTGCGTTGTA
CGCGTCGTTCGTGTACGTGATGTACTATTTTGCGCTTTCAATGGCGCTGG
ACGTTCGTCGACGGAAAGGGCAAGCATGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:331791..332669-

>Gchil6515.t1 ID=Gchil6515.t1|Name=Gchil6515.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00004390_pilon:331791..332669- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACTTCGTAGTCGCACCATCGCCAAATCGGATGCCTCTTCCACGGC
AACTTCCGAAATAGCGTTCGAGAAAACGGGCGCCGCGTTCGAAAAGGACG
CTGAGGCTCGAACAACGCCGCGTCGATCGGGGTCCGGTCGCGGACGCCGC
CGCGCCCCAGACTCGTACCCTTGGTACCAAATCGTGGCCGCCTGGATGGT
GCATTTATTCACCGCGTCGGGATTGCTTGTGAATATGTTCGCGTTACTGC
ACGCCATATTCGGCCAATCTGATTTTAATTTGTTTGCCAAGCTCAACTGG
TTGGCCATCTTCATCGATGCTGTGGACGGAACGTTTGCGAGAGCGGTTAA
TATTAAGAAGGTTATACCCACGTACGACGGCGCGATGCTTGACAACATTA
TCGATTTTCAAACATTCTCGGTTTTGCCCGCGTTGTGCATCGTCGTGTTT
GAGTTGGTGCAGGGAAAAGTCGCTCAGTATGCGGCCGCCGTAGCCATTCT
GCTCGCGTCAGCGTACCAGTTTTGTCAAACTATCGCCAAAACGCCCGACG
CGTTTGTGGGCTTTCCGAGTTATTGGAACATTGTGGTGTTCTACATATAT
TATTTGAAACCCACAACTGTCGTTTCGATGGTGCTCATTTTCAGCTGTGC
CGTGCTGTCGTTCATTCCTGTACATTTCATCTATCCAACGCGTACAAAGG
AGTTTCACTATGTGAACCACATCGGAGCGTACATTTGGTCCGGGCTAATG
ATGGTGCCAACGATGCAGCCTGAGTCGCGCTACGTGAAACCTGCGTTGTA
CGCGTCGTTCGTGTACGTGATGTACTATTTTGCGCTTTCAATGGCGCTGG
ACGTTCGTCGACGGAAAGGGCAAGCATGA
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