Gchil6510.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6510.t1
Unique NameGchil6510.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:273076..274071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708788.1
Preferred nameWDR82
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K08870,ko:K14962
KEGG Pathwayko03015,map03015
GOsGO:0000151,GO:0000785,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008287,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0031461,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0040034,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048188,GO:0048506,GO:0048509,GO:0048510,GO:0048580,GO:0048583,GO:0048586,GO:0050789,GO:0050793,GO:0051239,GO:0051276,GO:0051568,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072357,GO:0080008,GO:0080182,GO:1901564,GO:1902494,GO:1903293,GO:1990234,GO:2000026,GO:2000028,GO:2000241
Evalue5.15e-75
EggNOG OGsKOG1446@1|root,KOG1446@2759|Eukaryota
Descriptionhistone H3-K4 trimethylation
COG categoryS
BRITEko00000,ko00001,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6510Gchil6510Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 273076..274071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6510.t1.stop1Gchil6510.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 273076..273078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6510.t1.CDS1Gchil6510.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 273076..274071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6510.t1.exon1Gchil6510.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 273076..274071 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6510.t1.start1Gchil6510.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 274069..274071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6510.t1Gchil6510.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 273076..274071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6510.t1 ID=Gchil6510.t1|Name=Gchil6510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=332bp
MESGREELTNQMVKSFQVARVHREHQRPVSCLDTTQNGLITVSSSADNNL
VVYDTIEGSVTGKIPVRKYGAGVVRFVQDTNPPTVVTASTAEDNKIRALD
IETHRYIRYFDGHASQVVSIAASPASPDFITCSEDSYVMLWDCRSENALG
RVKTDGTPVVAYDPKGLIFGVAYRAANSKTLVKLYDARNYKDGPFLEFPL
DNPSDSLPTCLKFSSDGEYFLLVDTDSDAKVSIYDAYKGASYRTLSGHNN
SRGAPLEASFSPNSAFISSGSDDGSVYVWDLQGENMLLTVPSIHAMASAC
TIWNPVYALLVTACQNVAFWLPSEDYHANDY*
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spliced messenger RNA

>Gchil6510.t1 ID=Gchil6510.t1|Name=Gchil6510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00004390_pilon:273076..274071- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCGGAAGGGAGGAATTGACGAACCAAATGGTCAAATCCTTTCA
AGTGGCTCGAGTTCATCGAGAACACCAACGACCTGTATCGTGCCTCGATA
CTACTCAGAATGGATTAATCACTGTGTCATCAAGCGCAGATAATAATCTT
GTTGTCTATGATACCATCGAAGGTTCCGTCACAGGAAAAATTCCGGTTCG
CAAGTACGGTGCTGGTGTGGTTCGGTTCGTACAAGATACAAATCCCCCAA
CCGTTGTCACTGCATCCACTGCCGAAGATAATAAGATCCGAGCGCTTGAT
ATTGAAACTCATCGCTACATTCGTTATTTTGACGGACATGCCTCGCAGGT
TGTGTCGATTGCTGCTTCACCAGCCAGCCCGGATTTTATTACATGCTCTG
AAGATTCCTACGTAATGCTCTGGGATTGTCGTTCCGAAAATGCTCTTGGT
AGAGTAAAAACGGACGGTACACCTGTCGTAGCATATGATCCAAAAGGGTT
GATATTCGGCGTGGCGTACAGGGCTGCGAATTCAAAGACTTTGGTGAAAC
TTTATGATGCTCGAAATTACAAAGATGGCCCATTTCTGGAGTTTCCACTT
GACAATCCATCAGATTCACTTCCTACTTGTCTGAAATTCTCCTCTGATGG
GGAGTACTTCTTACTAGTGGATACGGACAGCGATGCAAAGGTTTCTATAT
ATGATGCGTATAAAGGCGCCAGCTACCGCACACTCTCGGGCCATAACAAT
TCCAGAGGTGCACCCCTAGAAGCATCCTTCAGCCCTAACTCAGCCTTTAT
TTCGAGTGGTTCAGACGACGGCTCTGTGTATGTCTGGGATTTGCAGGGCG
AAAACATGCTTCTCACTGTGCCTAGTATACACGCCATGGCAAGTGCATGC
ACAATATGGAACCCGGTTTACGCGCTTCTCGTCACAGCATGCCAGAATGT
CGCATTTTGGCTCCCCTCTGAAGACTACCATGCAAATGATTACTAG
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protein sequence of Gchil6510.t1

>Gchil6510.t1 ID=Gchil6510.t1|Name=Gchil6510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=332bp
MESGREELTNQMVKSFQVARVHREHQRPVSCLDTTQNGLITVSSSADNNL
VVYDTIEGSVTGKIPVRKYGAGVVRFVQDTNPPTVVTASTAEDNKIRALD
IETHRYIRYFDGHASQVVSIAASPASPDFITCSEDSYVMLWDCRSENALG
RVKTDGTPVVAYDPKGLIFGVAYRAANSKTLVKLYDARNYKDGPFLEFPL
DNPSDSLPTCLKFSSDGEYFLLVDTDSDAKVSIYDAYKGASYRTLSGHNN
SRGAPLEASFSPNSAFISSGSDDGSVYVWDLQGENMLLTVPSIHAMASAC
TIWNPVYALLVTACQNVAFWLPSEDYHANDY*
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mRNA from alignment at tig00004390_pilon:273076..274071-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6510.t1 ID=Gchil6510.t1|Name=Gchil6510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00004390_pilon:273076..274071- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCGGAAGGGAGGAATTGACGAACCAAATGGTCAAATCCTTTCA
AGTGGCTCGAGTTCATCGAGAACACCAACGACCTGTATCGTGCCTCGATA
CTACTCAGAATGGATTAATCACTGTGTCATCAAGCGCAGATAATAATCTT
GTTGTCTATGATACCATCGAAGGTTCCGTCACAGGAAAAATTCCGGTTCG
CAAGTACGGTGCTGGTGTGGTTCGGTTCGTACAAGATACAAATCCCCCAA
CCGTTGTCACTGCATCCACTGCCGAAGATAATAAGATCCGAGCGCTTGAT
ATTGAAACTCATCGCTACATTCGTTATTTTGACGGACATGCCTCGCAGGT
TGTGTCGATTGCTGCTTCACCAGCCAGCCCGGATTTTATTACATGCTCTG
AAGATTCCTACGTAATGCTCTGGGATTGTCGTTCCGAAAATGCTCTTGGT
AGAGTAAAAACGGACGGTACACCTGTCGTAGCATATGATCCAAAAGGGTT
GATATTCGGCGTGGCGTACAGGGCTGCGAATTCAAAGACTTTGGTGAAAC
TTTATGATGCTCGAAATTACAAAGATGGCCCATTTCTGGAGTTTCCACTT
GACAATCCATCAGATTCACTTCCTACTTGTCTGAAATTCTCCTCTGATGG
GGAGTACTTCTTACTAGTGGATACGGACAGCGATGCAAAGGTTTCTATAT
ATGATGCGTATAAAGGCGCCAGCTACCGCACACTCTCGGGCCATAACAAT
TCCAGAGGTGCACCCCTAGAAGCATCCTTCAGCCCTAACTCAGCCTTTAT
TTCGAGTGGTTCAGACGACGGCTCTGTGTATGTCTGGGATTTGCAGGGCG
AAAACATGCTTCTCACTGTGCCTAGTATACACGCCATGGCAAGTGCATGC
ACAATATGGAACCCGGTTTACGCGCTTCTCGTCACAGCATGCCAGAATGT
CGCATTTTGGCTCCCCTCTGAAGACTACCATGCAAATGATTACTAG
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Coding sequence (CDS) from alignment at tig00004390_pilon:273076..274071-

>Gchil6510.t1 ID=Gchil6510.t1|Name=Gchil6510.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00004390_pilon:273076..274071- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCGGAAGGGAGGAATTGACGAACCAAATGGTCAAATCCTTTCA
AGTGGCTCGAGTTCATCGAGAACACCAACGACCTGTATCGTGCCTCGATA
CTACTCAGAATGGATTAATCACTGTGTCATCAAGCGCAGATAATAATCTT
GTTGTCTATGATACCATCGAAGGTTCCGTCACAGGAAAAATTCCGGTTCG
CAAGTACGGTGCTGGTGTGGTTCGGTTCGTACAAGATACAAATCCCCCAA
CCGTTGTCACTGCATCCACTGCCGAAGATAATAAGATCCGAGCGCTTGAT
ATTGAAACTCATCGCTACATTCGTTATTTTGACGGACATGCCTCGCAGGT
TGTGTCGATTGCTGCTTCACCAGCCAGCCCGGATTTTATTACATGCTCTG
AAGATTCCTACGTAATGCTCTGGGATTGTCGTTCCGAAAATGCTCTTGGT
AGAGTAAAAACGGACGGTACACCTGTCGTAGCATATGATCCAAAAGGGTT
GATATTCGGCGTGGCGTACAGGGCTGCGAATTCAAAGACTTTGGTGAAAC
TTTATGATGCTCGAAATTACAAAGATGGCCCATTTCTGGAGTTTCCACTT
GACAATCCATCAGATTCACTTCCTACTTGTCTGAAATTCTCCTCTGATGG
GGAGTACTTCTTACTAGTGGATACGGACAGCGATGCAAAGGTTTCTATAT
ATGATGCGTATAAAGGCGCCAGCTACCGCACACTCTCGGGCCATAACAAT
TCCAGAGGTGCACCCCTAGAAGCATCCTTCAGCCCTAACTCAGCCTTTAT
TTCGAGTGGTTCAGACGACGGCTCTGTGTATGTCTGGGATTTGCAGGGCG
AAAACATGCTTCTCACTGTGCCTAGTATACACGCCATGGCAAGTGCATGC
ACAATATGGAACCCGGTTTACGCGCTTCTCGTCACAGCATGCCAGAATGT
CGCATTTTGGCTCCCCTCTGAAGACTACCATGCAAATGATTACTAG
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