Gchil651.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil651.t1
Unique NameGchil651.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:745081..746568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil651Gchil651Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 745081..746568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil651.t1.start1Gchil651.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 745081..745083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil651.t1.CDS1Gchil651.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 745081..746568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil651.t1.exon1Gchil651.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 745081..746568 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil651.t1.stop1Gchil651.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 746566..746568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil651.t1Gchil651.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 745081..746568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil651.t1 ID=Gchil651.t1|Name=Gchil651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MTHDARDRSLRTVLSCLRHDAVRHFVLNDHPFLLRRALQHGPRVAGTYLM
QTAATAATAATAATAAPLPAPLRLYEAGSVLHVTAASSAVRQLAFEVVHR
KHSVSCTRAPALYVSRVVHDRRTGLLLSLADRRVDDLVEVSYCAMHAPRF
RNHGFLLFRRDALLQLLHASPCDPFDARAARSALVYRLFSTELRHDDAHV
VRHGSAPYAEIDGLLAYCGSHAGVAHVDMYARHSGERIFERTVQARSRID
QLTDAHETRWLAAWALWHSGFAAAPPPPPPPPPPPPPLSSSSSSSSSSSS
SLLLLPPLQRAAHELDGERGGTWDADETNDLLLGGAALSLDLGDALAGFD
DVLRSPRIAADCASNVTAMLEEVVGVNGDCAQQRQAQTPQQAQPSEQAPS
PQQAISQPRRAMLIAPAPCAARSAVMDANQRRLELRKARNRASAQRSNLK
KKLALQQLKEELRALGSRERQLRQTEQKLRAENVSLRAAIAHAAS*
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spliced messenger RNA

>Gchil651.t1 ID=Gchil651.t1|Name=Gchil651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004380_pilon:745081..746568+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACGACGCGCGCGATCGATCGTTGCGAACAGTGCTGTCTTGTTT
GCGACACGACGCCGTGCGTCATTTCGTGTTAAACGATCATCCGTTTTTGC
TGCGTCGTGCGTTGCAGCACGGCCCGCGTGTCGCAGGTACATATCTCATG
CAGaccgctgccacagccgccaccgctgccacagccgccaccgctgcccc
gctgccGGCCCCGCTTCGGCTGTATGAGGCTGGTTCTGTGTTGCATGTCA
CCGCCGCTTCGTCCGCCGTGCGTCAGCTCGCCTTCGAGGTTGTACATCGT
AAACACTCGGTGTCGTGTACCCGCGCCCCAGCGCTTTATGTGTCGCGCGT
AGTGCACGACAGACGCACCGGTCTTTTATTGTCGCTTGCTGACCGTCGTG
TCGACGATCTTGTTGAGGTGTCGTACTGCGCCATGCATGCGCCGCGCTTT
CGTAATCATGGTTTCTTACTCTTCCGTCGCGACGCTCTTTTACAACTCTT
ACATGCCTCGCCGTGCGATCCATTTGACGCGCGCGCCGCGCGGAGCGCGC
TGGTTTACCGTCTCTTCAGCACTGAATTGCGTCACGACGACGCGCACGTT
GTGCGCCATGGTAGTGCTCCATACGCTGAGATCGACGGACTGCTTGCGTA
CTGCGGGTCACACGCGGGTGTGGCGCACGTCGACATGTATGCCCGTCACA
GCGGCGAGCGTATTTTCGAACGTACCGTACAAGCACGATCGCGCATCGAT
CAACTCACCGACGCGCACGAGACGCGTTGGCTAGCCGCATGGGCGCTATG
GCACTCGGGGTTTGCCGCTGcgccgccgccgccgccgccgccgccgccgc
ctccaccgccgTTgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgCTGCTGCTGCTTCCGCCGCTGCAGCGCGCGGCGCACGAGCTGGACGG
AGAGCGCGGGGGAACATGGGACGCTGATGAAACTAATGACCTCTTGCTTG
GAGGCGCCGCGCTCTCACTTGACCTGGGCGACGCGCTCGCTGGCTTTGAT
GACGTGTTGCGCTCGCCGAGGATCGCTGCTGATTGCGCTTCTAACGTCAC
CGCTATGCTGGAGGAGGTGGTTGGCGTGAACGGCGATTGCGCGCAGCAGC
GGCAGGCACAGACGCCACAGCAGGCACAGCCATCGGAGCAAGCACCGTCG
CCACAACAAGCCATATCTCAGCCGCGACGCGCCATGCTCATCGCGCCAGC
GCCATGCGCAGCGCGCTCAGCGGTGATGGACGCCAATCAACGGCGACTAG
AGCTGCGCAAGGCGCGGAACCGTGCAAGCGCGCAGCGCAGCAATCTCAAA
AAGAAGCTCGCGCTACAGCAACTCAAAGAGGAATTACGCGCGTTGGGCAG
TCGTGAGCGGCAGTTGAGACAGACAGAACAGAAGCTACGCGCAGAAAATG
TGTCATTGCGCGCTGCGATTGCACACGCCGCTTCGTAG
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protein sequence of Gchil651.t1

>Gchil651.t1 ID=Gchil651.t1|Name=Gchil651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MTHDARDRSLRTVLSCLRHDAVRHFVLNDHPFLLRRALQHGPRVAGTYLM
QTAATAATAATAATAAPLPAPLRLYEAGSVLHVTAASSAVRQLAFEVVHR
KHSVSCTRAPALYVSRVVHDRRTGLLLSLADRRVDDLVEVSYCAMHAPRF
RNHGFLLFRRDALLQLLHASPCDPFDARAARSALVYRLFSTELRHDDAHV
VRHGSAPYAEIDGLLAYCGSHAGVAHVDMYARHSGERIFERTVQARSRID
QLTDAHETRWLAAWALWHSGFAAAPPPPPPPPPPPPPLSSSSSSSSSSSS
SLLLLPPLQRAAHELDGERGGTWDADETNDLLLGGAALSLDLGDALAGFD
DVLRSPRIAADCASNVTAMLEEVVGVNGDCAQQRQAQTPQQAQPSEQAPS
PQQAISQPRRAMLIAPAPCAARSAVMDANQRRLELRKARNRASAQRSNLK
KKLALQQLKEELRALGSRERQLRQTEQKLRAENVSLRAAIAHAAS*
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mRNA from alignment at tig00004380_pilon:745081..746568+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil651.t1 ID=Gchil651.t1|Name=Gchil651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00004380_pilon:745081..746568+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCACGACGCGCGCGATCGATCGTTGCGAACAGTGCTGTCTTGTTT
GCGACACGACGCCGTGCGTCATTTCGTGTTAAACGATCATCCGTTTTTGC
TGCGTCGTGCGTTGCAGCACGGCCCGCGTGTCGCAGGTACATATCTCATG
CAGaccgctgccacagccgccaccgctgccacagccgccaccgctgcccc
gctgccGGCCCCGCTTCGGCTGTATGAGGCTGGTTCTGTGTTGCATGTCA
CCGCCGCTTCGTCCGCCGTGCGTCAGCTCGCCTTCGAGGTTGTACATCGT
AAACACTCGGTGTCGTGTACCCGCGCCCCAGCGCTTTATGTGTCGCGCGT
AGTGCACGACAGACGCACCGGTCTTTTATTGTCGCTTGCTGACCGTCGTG
TCGACGATCTTGTTGAGGTGTCGTACTGCGCCATGCATGCGCCGCGCTTT
CGTAATCATGGTTTCTTACTCTTCCGTCGCGACGCTCTTTTACAACTCTT
ACATGCCTCGCCGTGCGATCCATTTGACGCGCGCGCCGCGCGGAGCGCGC
TGGTTTACCGTCTCTTCAGCACTGAATTGCGTCACGACGACGCGCACGTT
GTGCGCCATGGTAGTGCTCCATACGCTGAGATCGACGGACTGCTTGCGTA
CTGCGGGTCACACGCGGGTGTGGCGCACGTCGACATGTATGCCCGTCACA
GCGGCGAGCGTATTTTCGAACGTACCGTACAAGCACGATCGCGCATCGAT
CAACTCACCGACGCGCACGAGACGCGTTGGCTAGCCGCATGGGCGCTATG
GCACTCGGGGTTTGCCGCTGcgccgccgccgccgccgccgccgccgccgc
ctccaccgccgTTgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgCTGCTGCTGCTTCCGCCGCTGCAGCGCGCGGCGCACGAGCTGGACGG
AGAGCGCGGGGGAACATGGGACGCTGATGAAACTAATGACCTCTTGCTTG
GAGGCGCCGCGCTCTCACTTGACCTGGGCGACGCGCTCGCTGGCTTTGAT
GACGTGTTGCGCTCGCCGAGGATCGCTGCTGATTGCGCTTCTAACGTCAC
CGCTATGCTGGAGGAGGTGGTTGGCGTGAACGGCGATTGCGCGCAGCAGC
GGCAGGCACAGACGCCACAGCAGGCACAGCCATCGGAGCAAGCACCGTCG
CCACAACAAGCCATATCTCAGCCGCGACGCGCCATGCTCATCGCGCCAGC
GCCATGCGCAGCGCGCTCAGCGGTGATGGACGCCAATCAACGGCGACTAG
AGCTGCGCAAGGCGCGGAACCGTGCAAGCGCGCAGCGCAGCAATCTCAAA
AAGAAGCTCGCGCTACAGCAACTCAAAGAGGAATTACGCGCGTTGGGCAG
TCGTGAGCGGCAGTTGAGACAGACAGAACAGAAGCTACGCGCAGAAAATG
TGTCATTGCGCGCTGCGATTGCACACGCCGCTTCGTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:745081..746568+

>Gchil651.t1 ID=Gchil651.t1|Name=Gchil651.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00004380_pilon:745081..746568+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCACGACGCGCGCGATCGATCGTTGCGAACAGTGCTGTCTTGTTT
GCGACACGACGCCGTGCGTCATTTCGTGTTAAACGATCATCCGTTTTTGC
TGCGTCGTGCGTTGCAGCACGGCCCGCGTGTCGCAGGTACATATCTCATG
CAGaccgctgccacagccgccaccgctgccacagccgccaccgctgcccc
gctgccGGCCCCGCTTCGGCTGTATGAGGCTGGTTCTGTGTTGCATGTCA
CCGCCGCTTCGTCCGCCGTGCGTCAGCTCGCCTTCGAGGTTGTACATCGT
AAACACTCGGTGTCGTGTACCCGCGCCCCAGCGCTTTATGTGTCGCGCGT
AGTGCACGACAGACGCACCGGTCTTTTATTGTCGCTTGCTGACCGTCGTG
TCGACGATCTTGTTGAGGTGTCGTACTGCGCCATGCATGCGCCGCGCTTT
CGTAATCATGGTTTCTTACTCTTCCGTCGCGACGCTCTTTTACAACTCTT
ACATGCCTCGCCGTGCGATCCATTTGACGCGCGCGCCGCGCGGAGCGCGC
TGGTTTACCGTCTCTTCAGCACTGAATTGCGTCACGACGACGCGCACGTT
GTGCGCCATGGTAGTGCTCCATACGCTGAGATCGACGGACTGCTTGCGTA
CTGCGGGTCACACGCGGGTGTGGCGCACGTCGACATGTATGCCCGTCACA
GCGGCGAGCGTATTTTCGAACGTACCGTACAAGCACGATCGCGCATCGAT
CAACTCACCGACGCGCACGAGACGCGTTGGCTAGCCGCATGGGCGCTATG
GCACTCGGGGTTTGCCGCTGcgccgccgccgccgccgccgccgccgccgc
ctccaccgccgTTgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcgtcg
tcgCTGCTGCTGCTTCCGCCGCTGCAGCGCGCGGCGCACGAGCTGGACGG
AGAGCGCGGGGGAACATGGGACGCTGATGAAACTAATGACCTCTTGCTTG
GAGGCGCCGCGCTCTCACTTGACCTGGGCGACGCGCTCGCTGGCTTTGAT
GACGTGTTGCGCTCGCCGAGGATCGCTGCTGATTGCGCTTCTAACGTCAC
CGCTATGCTGGAGGAGGTGGTTGGCGTGAACGGCGATTGCGCGCAGCAGC
GGCAGGCACAGACGCCACAGCAGGCACAGCCATCGGAGCAAGCACCGTCG
CCACAACAAGCCATATCTCAGCCGCGACGCGCCATGCTCATCGCGCCAGC
GCCATGCGCAGCGCGCTCAGCGGTGATGGACGCCAATCAACGGCGACTAG
AGCTGCGCAAGGCGCGGAACCGTGCAAGCGCGCAGCGCAGCAATCTCAAA
AAGAAGCTCGCGCTACAGCAACTCAAAGAGGAATTACGCGCGTTGGGCAG
TCGTGAGCGGCAGTTGAGACAGACAGAACAGAAGCTACGCGCAGAAAATG
TGTCATTGCGCGCTGCGATTGCACACGCCGCTTCGTAG
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