Gchil6508.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6508.t1
Unique Name	Gchil6508.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:264974..266071 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708575.1
PFAMs	PseudoU_synth_2
Max annot lvl	2759\|Eukaryota
GOs	GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue	2.69e-44
EggNOG OGs	COG0564@1\|root,KOG1919@2759\|Eukaryota
Description	pseudouridine synthase activity
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6508	Gchil6508	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 264974..266071 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6508.t1.stop1	Gchil6508.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 264974..264976 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6508.t1.CDS1	Gchil6508.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 264974..266071 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6508.t1.exon1	Gchil6508.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 264974..266071 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6508.t1.start1	Gchil6508.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 266069..266071 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6508.t1	Gchil6508.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 264974..266071 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:264974..266071-
coding sequence from alignment at tig00004390_pilon:264974..266071-

mRNA sequence

>Gchil6508.t1 ID=Gchil6508.t1|Name=Gchil6508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=366bp
MTVATPALTHGAMRALVRRAFSSKPIQSSPNISSSQSFELPFAKQPARFK
VSPDLSGSRLDRFIKSRAPGLPPGLIHRHIRQARVQINGRIERRRGTPVR
ENDVISFPGEVKLGLSRRKKRPTPDDISLSEAMEVKQWLLYRDARVAVLN
KPPGLPVLSEPGKETSRTLEQLLCGLGTGRYWLVHRLQTQVGGAILVARD
VGAATLLSDFFRARVVTRLYWGLVSGVPRNKKGVVNMDIGGKKAVTRYRV
VQMIDNHYSWLELEPRTGRSNQLSIHCAEGLGTPLIGDRNFDNADDNQHP
VEAGALQLCSRTLTFPRLTQINPSIRQKRRCRSPDLVSVKSPLPPHMKDT
WRRLGLQESFASALS*

spliced messenger RNA

>Gchil6508.t1 ID=Gchil6508.t1|Name=Gchil6508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004390_pilon:264974..266071- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTGGCTACCCCAGCCCTGACGCACGGTGCAATGAGAGCTCTCGT
TCGGCGCGCGTTCAGCTCAAAGCCAATTCAATCTTCGCCAAATATATCCT
CCTCACAATCTTTTGAGCTTCCGTTTGCTAAACAACCGGCGCGTTTTAAA
GTTTCACCAGACCTTAGCGGTTCTCGTCTCGACCGTTTCATCAAAAGTAG
AGCACCGGGTCTTCCGCCTGGTCTTATTCACCGCCATATCCGCCAAGCTC
GTGTCCAAATCAATGGCCGAATTGAACGCCGACGTGGCACTCCTGTTCGC
GAAAATGATGTGATTAGCTTCCCAGGCGAAGTAAAACTTGGATTATCGCG
CCGGAAAAAACGGCCAACTCCAGACGATATCTCACTTTCAGAAGCTATGG
AAGTTAAGCAATGGTTGCTCTACAGAGATGCCAGGGTTGCTGTGTTAAAC
AAACCACCGGGCTTGCCAGTTCTTAGCGAACCTGGGAAGGAAACATCTAG
GACACTTGAACAGCTTCTTTGTGGACTGGGCACTGGTCGCTATTGGTTAG
TACATCGTTTACAAACGCAGGTTGGCGGGGCTATCCTAGTTGCAAGAGAC
GTCGGTGCTGCAACACTACTGTCCGACTTCTTCCGAGCACGCGTGGTGAC
GCGTCTGTATTGGGGTTTGGTCTCCGGAGTGCCTCGGAATAAAAAAGGAG
TCGTAAATATGGACATTGGTGGTAAGAAGGCTGTAACAAGGTATCGTGTG
GTGCAAATGATAGATAATCATTATTCTTGGCTTGAACTCGAACCGCGTAC
AGGGCGCTCCAACCAACTATCAATACACTGCGCCGAGGGGCTTGGCACTC
CGCTCATCGGAGATAGAAATTTCGACAATGCTGACGACAATCAGCACCCA
GTTGAAGCCGGAGCTCTGCAACTGTGTAGTAGGACTTTAACTTTCCCTCG
CCTTACACAAATCAACCCATCGATTCGTCAAAAACGTAGATGTAGAAGCC
CCGACTTGGTATCAGTGAAATCTCCGCTTCCTCCTCACATGAAAGATACA
TGGCGGAGACTCGGTTTGCAGGAGAGTTTCGCAAGTGCTCTTTCCTAG

protein sequence of Gchil6508.t1

>Gchil6508.t1 ID=Gchil6508.t1|Name=Gchil6508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=366bp
MTVATPALTHGAMRALVRRAFSSKPIQSSPNISSSQSFELPFAKQPARFK
VSPDLSGSRLDRFIKSRAPGLPPGLIHRHIRQARVQINGRIERRRGTPVR
ENDVISFPGEVKLGLSRRKKRPTPDDISLSEAMEVKQWLLYRDARVAVLN
KPPGLPVLSEPGKETSRTLEQLLCGLGTGRYWLVHRLQTQVGGAILVARD
VGAATLLSDFFRARVVTRLYWGLVSGVPRNKKGVVNMDIGGKKAVTRYRV
VQMIDNHYSWLELEPRTGRSNQLSIHCAEGLGTPLIGDRNFDNADDNQHP
VEAGALQLCSRTLTFPRLTQINPSIRQKRRCRSPDLVSVKSPLPPHMKDT
WRRLGLQESFASALS*

mRNA from alignment at tig00004390_pilon:264974..266071-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6508.t1 ID=Gchil6508.t1|Name=Gchil6508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00004390_pilon:264974..266071- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTGGCTACCCCAGCCCTGACGCACGGTGCAATGAGAGCTCTCGT
TCGGCGCGCGTTCAGCTCAAAGCCAATTCAATCTTCGCCAAATATATCCT
CCTCACAATCTTTTGAGCTTCCGTTTGCTAAACAACCGGCGCGTTTTAAA
GTTTCACCAGACCTTAGCGGTTCTCGTCTCGACCGTTTCATCAAAAGTAG
AGCACCGGGTCTTCCGCCTGGTCTTATTCACCGCCATATCCGCCAAGCTC
GTGTCCAAATCAATGGCCGAATTGAACGCCGACGTGGCACTCCTGTTCGC
GAAAATGATGTGATTAGCTTCCCAGGCGAAGTAAAACTTGGATTATCGCG
CCGGAAAAAACGGCCAACTCCAGACGATATCTCACTTTCAGAAGCTATGG
AAGTTAAGCAATGGTTGCTCTACAGAGATGCCAGGGTTGCTGTGTTAAAC
AAACCACCGGGCTTGCCAGTTCTTAGCGAACCTGGGAAGGAAACATCTAG
GACACTTGAACAGCTTCTTTGTGGACTGGGCACTGGTCGCTATTGGTTAG
TACATCGTTTACAAACGCAGGTTGGCGGGGCTATCCTAGTTGCAAGAGAC
GTCGGTGCTGCAACACTACTGTCCGACTTCTTCCGAGCACGCGTGGTGAC
GCGTCTGTATTGGGGTTTGGTCTCCGGAGTGCCTCGGAATAAAAAAGGAG
TCGTAAATATGGACATTGGTGGTAAGAAGGCTGTAACAAGGTATCGTGTG
GTGCAAATGATAGATAATCATTATTCTTGGCTTGAACTCGAACCGCGTAC
AGGGCGCTCCAACCAACTATCAATACACTGCGCCGAGGGGCTTGGCACTC
CGCTCATCGGAGATAGAAATTTCGACAATGCTGACGACAATCAGCACCCA
GTTGAAGCCGGAGCTCTGCAACTGTGTAGTAGGACTTTAACTTTCCCTCG
CCTTACACAAATCAACCCATCGATTCGTCAAAAACGTAGATGTAGAAGCC
CCGACTTGGTATCAGTGAAATCTCCGCTTCCTCCTCACATGAAAGATACA
TGGCGGAGACTCGGTTTGCAGGAGAGTTTCGCAAGTGCTCTTTCCTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:264974..266071-

>Gchil6508.t1 ID=Gchil6508.t1|Name=Gchil6508.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00004390_pilon:264974..266071- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTGGCTACCCCAGCCCTGACGCACGGTGCAATGAGAGCTCTCGT
TCGGCGCGCGTTCAGCTCAAAGCCAATTCAATCTTCGCCAAATATATCCT
CCTCACAATCTTTTGAGCTTCCGTTTGCTAAACAACCGGCGCGTTTTAAA
GTTTCACCAGACCTTAGCGGTTCTCGTCTCGACCGTTTCATCAAAAGTAG
AGCACCGGGTCTTCCGCCTGGTCTTATTCACCGCCATATCCGCCAAGCTC
GTGTCCAAATCAATGGCCGAATTGAACGCCGACGTGGCACTCCTGTTCGC
GAAAATGATGTGATTAGCTTCCCAGGCGAAGTAAAACTTGGATTATCGCG
CCGGAAAAAACGGCCAACTCCAGACGATATCTCACTTTCAGAAGCTATGG
AAGTTAAGCAATGGTTGCTCTACAGAGATGCCAGGGTTGCTGTGTTAAAC
AAACCACCGGGCTTGCCAGTTCTTAGCGAACCTGGGAAGGAAACATCTAG
GACACTTGAACAGCTTCTTTGTGGACTGGGCACTGGTCGCTATTGGTTAG
TACATCGTTTACAAACGCAGGTTGGCGGGGCTATCCTAGTTGCAAGAGAC
GTCGGTGCTGCAACACTACTGTCCGACTTCTTCCGAGCACGCGTGGTGAC
GCGTCTGTATTGGGGTTTGGTCTCCGGAGTGCCTCGGAATAAAAAAGGAG
TCGTAAATATGGACATTGGTGGTAAGAAGGCTGTAACAAGGTATCGTGTG
GTGCAAATGATAGATAATCATTATTCTTGGCTTGAACTCGAACCGCGTAC
AGGGCGCTCCAACCAACTATCAATACACTGCGCCGAGGGGCTTGGCACTC
CGCTCATCGGAGATAGAAATTTCGACAATGCTGACGACAATCAGCACCCA
GTTGAAGCCGGAGCTCTGCAACTGTGTAGTAGGACTTTAACTTTCCCTCG
CCTTACACAAATCAACCCATCGATTCGTCAAAAACGTAGATGTAGAAGCC
CCGACTTGGTATCAGTGAAATCTCCGCTTCCTCCTCACATGAAAGATACA
TGGCGGAGACTCGGTTTGCAGGAGAGTTTCGCAAGTGCTCTTTCCTAG