Gchil6502.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6502.t1
Unique Name	Gchil6502.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:162911..164107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703842.1
PFAMs	Glyco_transf_34
Max annot lvl	2759\|Eukaryota
Evalue	4.16e-114
EggNOG OGs	2EAHV@1\|root,2SGRN@2759\|Eukaryota
Description	galactosyl transferase GMA12/MNN10 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6502	Gchil6502	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 162911..164107 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6502.t1.start1	Gchil6502.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 162911..162913 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6502.t1.CDS1	Gchil6502.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 162911..164107 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6502.t1.exon1	Gchil6502.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 162911..164107 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6502.t1.stop1	Gchil6502.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 164105..164107 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6502.t1	Gchil6502.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 162911..164107 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:162911..164107+
coding sequence from alignment at tig00004390_pilon:162911..164107+

mRNA sequence

>Gchil6502.t1 ID=Gchil6502.t1|Name=Gchil6502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=399bp
MPSFFLPHGLYIALVAALLACVATPVRASPSQAGHKIALLHLHDDAPFFD
QLGALTLANKQRYASRHDYEMVSHTPARTHGLYRRAKCSDQRAVTRGNVC
YVQIEHFQIDQRAPTFGKIKLALSACVGRKGYWLLWSDADAMIVNQTIPL
TDVIDDRYDMAITADWLMINAGVILFKCSKWTLAFLKRVYAAREFDNARA
LDQSAFQHFFDAEADTKQHVKYVPKWTINVYTEEYRPGDFVLHMAGKLYE
ATVPGALAVANQFDILSTVDDIEDVEPFFRTQYMLNAYSGQCVQDTEAAQ
DSQCRPEDERRRKLEDAPILMSSPSRYRHVALRYYWMPDWKDKYDTEDWN
RSSVRFNPREQMAADRDYDEAVELATLGGVLEENELGDDDANVSHDEL*

spliced messenger RNA

>Gchil6502.t1 ID=Gchil6502.t1|Name=Gchil6502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004390_pilon:162911..164107+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCTTTCTTCCTGCCACACGGCTTGTACATCGCTCTCGTCGCGGC
GCTGCTGGCTTGCGTGGCGACGCCGGTGCGCGCTTCGCCGTCTCAAGCTG
GGCACAAAATTGCCCTGCTTCACCTTCATGATGATGCTCCGTTTTTCGAC
CAGTTGGGAGCCCTCACCCTTGCTAACAAGCAGCGATACGCTTCACGACA
TGATTACGAAATGGTCTCCCACACCCCGGCACGCACGCACGGCCTGTATC
GAAGGGCAAAGTGCTCAGATCAGCGCGCTGTGACCCGCGGTAATGTGTGC
TACGTACAGATCGAGCACTTTCAAATCGACCAGCGCGCACCCACGTTCGG
AAAGATCAAGTTGGCATTGTCCGCATGTGTTGGGAGGAAGGGCTATTGGT
TGTTGTGGTCGGACGCTGATGCTATGATTGTGAATCAGACCATCCCGCTC
ACGGACGTTATTGATGATAGATACGATATGGCCATTACCGCCGACTGGCT
TATGATAAATGCCGGCGTTATACTTTTCAAATGTTCAAAATGGACGCTGG
CCTTTCTGAAACGCGTCTACGCGGCCAGGGAGTTTGATAATGCTCGCGCA
TTGGATCAAAGTGCTTTTCAACACTTTTTTGATGCAGAGGCGGATACAAA
ACAACACGTCAAGTACGTTCCCAAGTGGACCATCAACGTCTATACAGAGG
AGTATAGACCGGGTGATTTCGTCCTACACATGGCTGGCAAGTTGTACGAA
GCTACTGTGCCAGGAGCCCTAGCCGTTGCGAATCAGTTTGACATACTATC
CACGGTAGATGATATTGAGGACGTTGAACCATTCTTCAGAACACAATACA
TGCTAAACGCATATAGCGGCCAATGTGTCCAGGACACCGAAGCAGCACAG
GATTCACAGTGTCGACCGGAAGATGAGAGACGTAGAAAGCTTGAAGACGC
CCCCATTCTCATGTCTTCACCCTCTCGATATCGACATGTGGCGCTCAGAT
ACTACTGGATGCCCGACTGGAAGGACAAATATGACACTGAGGATTGGAAC
CGAAGCAGCGTCCGGTTCAATCCACGTGAGCAAATGGCAGCCGATCGCGA
CTACGACGAGGCCGTTGAACTGGCCACTCTTGGGGGCGTACTCGAGGAAA
ACGAGCTCGGCGACGACGATGCCAACGTTTCGCACGATGAGCTGTGA

protein sequence of Gchil6502.t1

>Gchil6502.t1 ID=Gchil6502.t1|Name=Gchil6502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=399bp
MPSFFLPHGLYIALVAALLACVATPVRASPSQAGHKIALLHLHDDAPFFD
QLGALTLANKQRYASRHDYEMVSHTPARTHGLYRRAKCSDQRAVTRGNVC
YVQIEHFQIDQRAPTFGKIKLALSACVGRKGYWLLWSDADAMIVNQTIPL
TDVIDDRYDMAITADWLMINAGVILFKCSKWTLAFLKRVYAAREFDNARA
LDQSAFQHFFDAEADTKQHVKYVPKWTINVYTEEYRPGDFVLHMAGKLYE
ATVPGALAVANQFDILSTVDDIEDVEPFFRTQYMLNAYSGQCVQDTEAAQ
DSQCRPEDERRRKLEDAPILMSSPSRYRHVALRYYWMPDWKDKYDTEDWN
RSSVRFNPREQMAADRDYDEAVELATLGGVLEENELGDDDANVSHDEL*

mRNA from alignment at tig00004390_pilon:162911..164107+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6502.t1 ID=Gchil6502.t1|Name=Gchil6502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at tig00004390_pilon:162911..164107+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTTTCTTCCTGCCACACGGCTTGTACATCGCTCTCGTCGCGGC
GCTGCTGGCTTGCGTGGCGACGCCGGTGCGCGCTTCGCCGTCTCAAGCTG
GGCACAAAATTGCCCTGCTTCACCTTCATGATGATGCTCCGTTTTTCGAC
CAGTTGGGAGCCCTCACCCTTGCTAACAAGCAGCGATACGCTTCACGACA
TGATTACGAAATGGTCTCCCACACCCCGGCACGCACGCACGGCCTGTATC
GAAGGGCAAAGTGCTCAGATCAGCGCGCTGTGACCCGCGGTAATGTGTGC
TACGTACAGATCGAGCACTTTCAAATCGACCAGCGCGCACCCACGTTCGG
AAAGATCAAGTTGGCATTGTCCGCATGTGTTGGGAGGAAGGGCTATTGGT
TGTTGTGGTCGGACGCTGATGCTATGATTGTGAATCAGACCATCCCGCTC
ACGGACGTTATTGATGATAGATACGATATGGCCATTACCGCCGACTGGCT
TATGATAAATGCCGGCGTTATACTTTTCAAATGTTCAAAATGGACGCTGG
CCTTTCTGAAACGCGTCTACGCGGCCAGGGAGTTTGATAATGCTCGCGCA
TTGGATCAAAGTGCTTTTCAACACTTTTTTGATGCAGAGGCGGATACAAA
ACAACACGTCAAGTACGTTCCCAAGTGGACCATCAACGTCTATACAGAGG
AGTATAGACCGGGTGATTTCGTCCTACACATGGCTGGCAAGTTGTACGAA
GCTACTGTGCCAGGAGCCCTAGCCGTTGCGAATCAGTTTGACATACTATC
CACGGTAGATGATATTGAGGACGTTGAACCATTCTTCAGAACACAATACA
TGCTAAACGCATATAGCGGCCAATGTGTCCAGGACACCGAAGCAGCACAG
GATTCACAGTGTCGACCGGAAGATGAGAGACGTAGAAAGCTTGAAGACGC
CCCCATTCTCATGTCTTCACCCTCTCGATATCGACATGTGGCGCTCAGAT
ACTACTGGATGCCCGACTGGAAGGACAAATATGACACTGAGGATTGGAAC
CGAAGCAGCGTCCGGTTCAATCCACGTGAGCAAATGGCAGCCGATCGCGA
CTACGACGAGGCCGTTGAACTGGCCACTCTTGGGGGCGTACTCGAGGAAA
ACGAGCTCGGCGACGACGATGCCAACGTTTCGCACGATGAGCTGTGA

Coding sequence (CDS) from alignment at tig00004390_pilon:162911..164107+

>Gchil6502.t1 ID=Gchil6502.t1|Name=Gchil6502.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1197bp|location=Sequence derived from alignment at tig00004390_pilon:162911..164107+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTTTCTTCCTGCCACACGGCTTGTACATCGCTCTCGTCGCGGC
GCTGCTGGCTTGCGTGGCGACGCCGGTGCGCGCTTCGCCGTCTCAAGCTG
GGCACAAAATTGCCCTGCTTCACCTTCATGATGATGCTCCGTTTTTCGAC
CAGTTGGGAGCCCTCACCCTTGCTAACAAGCAGCGATACGCTTCACGACA
TGATTACGAAATGGTCTCCCACACCCCGGCACGCACGCACGGCCTGTATC
GAAGGGCAAAGTGCTCAGATCAGCGCGCTGTGACCCGCGGTAATGTGTGC
TACGTACAGATCGAGCACTTTCAAATCGACCAGCGCGCACCCACGTTCGG
AAAGATCAAGTTGGCATTGTCCGCATGTGTTGGGAGGAAGGGCTATTGGT
TGTTGTGGTCGGACGCTGATGCTATGATTGTGAATCAGACCATCCCGCTC
ACGGACGTTATTGATGATAGATACGATATGGCCATTACCGCCGACTGGCT
TATGATAAATGCCGGCGTTATACTTTTCAAATGTTCAAAATGGACGCTGG
CCTTTCTGAAACGCGTCTACGCGGCCAGGGAGTTTGATAATGCTCGCGCA
TTGGATCAAAGTGCTTTTCAACACTTTTTTGATGCAGAGGCGGATACAAA
ACAACACGTCAAGTACGTTCCCAAGTGGACCATCAACGTCTATACAGAGG
AGTATAGACCGGGTGATTTCGTCCTACACATGGCTGGCAAGTTGTACGAA
GCTACTGTGCCAGGAGCCCTAGCCGTTGCGAATCAGTTTGACATACTATC
CACGGTAGATGATATTGAGGACGTTGAACCATTCTTCAGAACACAATACA
TGCTAAACGCATATAGCGGCCAATGTGTCCAGGACACCGAAGCAGCACAG
GATTCACAGTGTCGACCGGAAGATGAGAGACGTAGAAAGCTTGAAGACGC
CCCCATTCTCATGTCTTCACCCTCTCGATATCGACATGTGGCGCTCAGAT
ACTACTGGATGCCCGACTGGAAGGACAAATATGACACTGAGGATTGGAAC
CGAAGCAGCGTCCGGTTCAATCCACGTGAGCAAATGGCAGCCGATCGCGA
CTACGACGAGGCCGTTGAACTGGCCACTCTTGGGGGCGTACTCGAGGAAA
ACGAGCTCGGCGACGACGATGCCAACGTTTCGCACGATGAGCTGTGA