Gchil6497.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6497.t1
Unique NameGchil6497.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:122014..123105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4577.GRMZM5G863645_P01
PFAMsHydrolase_4
Max annot lvl35493|Streptophyta
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Evalue5.48e-45
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota,37JG9@33090|Viridiplantae,3GEJG@35493|Streptophyta,3M22P@4447|Liliopsida,3I85V@38820|Poales
EC3.1.1.23
DescriptionSerine aminopeptidase, S33
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6497Gchil6497Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 122014..123105 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6497.t1.stop1Gchil6497.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 122014..122016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6497.t1.CDS1Gchil6497.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 122014..123105 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6497.t1.exon1Gchil6497.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 122014..123105 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6497.t1.start1Gchil6497.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 123103..123105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6497.t1Gchil6497.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 122014..123105 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6497.t1 ID=Gchil6497.t1|Name=Gchil6497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MEAALTWLFPTGHRVPSGRSPSFTQPLLPSPLATRPSPPPGVLACPLPQP
RSHARHATVGWHVDEWADHNAYYVLNSRGQRIFVQTWRPRQDRRLLWHRV
FSRRRAERGIIYIIHGLNDHSNKYTRVARAWVDAGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDARHTIQHAKLRLPKRLSTLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RKRRRVKKNEGDGYDSRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFR
VPVFVAHSRKDRVTNAKGTIDFHERIGSSDKTVRLYDGSVHDLLAEKRDM
VMGDMVSWASTRL*
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spliced messenger RNA

>Gchil6497.t1 ID=Gchil6497.t1|Name=Gchil6497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004390_pilon:122014..123105- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCCGCGCTGACTTGGCTGTTTCCCACCGGCCATCGCGTACCCTC
AGGCCGTTCGCCGTCGTTCACGCAGCCGTTGTTACCGTCTCCTCTTGCCA
CTCGCCCTTCGCCGCCACCCGGTGTACTGGCATGTCCGCTTCCTCAGCCG
CGCTCGCACGCGCGCCATGCGACTGTTGGGTGGCACGTAGATGAGTGGGC
TGACCACAACGCGTACTATGTGTTGAATTCACGCGGACAGCGCATCTTTG
TGCAAACGTGGAGACCACGTCAAGACAGGCGGCTGCTCTGGCATCGCGTT
TTCTCTCGTCGTCGAGCGGAACGCGGTATTATTTACATCATTCATGGGCT
CAATGACCATTCGAACAAGTATACGCGCGTGGCAAGGGCATGGGTGGATG
CGGGTTATGTTGTCATTGCGCACGATTTTCATGGTCACGGACGTTCGGAT
GGTTACAGGGCGTATACGTCGTCGATGCAGCACTATGTGGATGACGCACG
ACATACCATTCAGCACGCCAAGCTAAGACTGCCAAAACGACTTTCAACGC
TGCCCAGCTTCATTTTGGCTCATTCCTTGGGCGGTGCCGTCGCCATTCAC
CTAGCCCGAGATGCTCCGTGCGGTACGTTTAGAGGGGTTATGCTCACGGC
GCCTGCTGTGCGCGTGTACCCCAAACCGATTTTGAAACTGTTTGCGCCGC
TGTTGGGAACGCTTGCGCCATTGCTACCGGTACAGAGGCTCAAGTTTGAC
AGGAAGAGACGACGTGTGAAGAAGAATGAGGGTGATGGATACGATAGTCG
GGATGATCCGCTGGTTGTGCGTAGTCCTGTTCGAGCGAGGGTTGGCTACG
AGGTGCTGAAGAGCTGTGAGAAGATTATGAGCGAGGCGGAAAGGTTTCGT
GTGCCTGTTTTTGTGGCGCATTCTAGGAAGGATCGCGTGACAAACGCGAA
GGGGACTATTGACTTTCATGAGCGGATTGGAAGCAGTGATAAGACGGTTC
GGTTGTACGATGGAAGTGTGCATGACCTGCTGGCTGAGAAGAGGGACATG
GTCATGGGCGACATGGTGTCGTGGGCTTCGACGCGTCTGTGA
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protein sequence of Gchil6497.t1

>Gchil6497.t1 ID=Gchil6497.t1|Name=Gchil6497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MEAALTWLFPTGHRVPSGRSPSFTQPLLPSPLATRPSPPPGVLACPLPQP
RSHARHATVGWHVDEWADHNAYYVLNSRGQRIFVQTWRPRQDRRLLWHRV
FSRRRAERGIIYIIHGLNDHSNKYTRVARAWVDAGYVVIAHDFHGHGRSD
GYRAYTSSMQHYVDDARHTIQHAKLRLPKRLSTLPSFILAHSLGGAVAIH
LARDAPCGTFRGVMLTAPAVRVYPKPILKLFAPLLGTLAPLLPVQRLKFD
RKRRRVKKNEGDGYDSRDDPLVVRSPVRARVGYEVLKSCEKIMSEAERFR
VPVFVAHSRKDRVTNAKGTIDFHERIGSSDKTVRLYDGSVHDLLAEKRDM
VMGDMVSWASTRL*
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mRNA from alignment at tig00004390_pilon:122014..123105-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6497.t1 ID=Gchil6497.t1|Name=Gchil6497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004390_pilon:122014..123105- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCCGCGCTGACTTGGCTGTTTCCCACCGGCCATCGCGTACCCTC
AGGCCGTTCGCCGTCGTTCACGCAGCCGTTGTTACCGTCTCCTCTTGCCA
CTCGCCCTTCGCCGCCACCCGGTGTACTGGCATGTCCGCTTCCTCAGCCG
CGCTCGCACGCGCGCCATGCGACTGTTGGGTGGCACGTAGATGAGTGGGC
TGACCACAACGCGTACTATGTGTTGAATTCACGCGGACAGCGCATCTTTG
TGCAAACGTGGAGACCACGTCAAGACAGGCGGCTGCTCTGGCATCGCGTT
TTCTCTCGTCGTCGAGCGGAACGCGGTATTATTTACATCATTCATGGGCT
CAATGACCATTCGAACAAGTATACGCGCGTGGCAAGGGCATGGGTGGATG
CGGGTTATGTTGTCATTGCGCACGATTTTCATGGTCACGGACGTTCGGAT
GGTTACAGGGCGTATACGTCGTCGATGCAGCACTATGTGGATGACGCACG
ACATACCATTCAGCACGCCAAGCTAAGACTGCCAAAACGACTTTCAACGC
TGCCCAGCTTCATTTTGGCTCATTCCTTGGGCGGTGCCGTCGCCATTCAC
CTAGCCCGAGATGCTCCGTGCGGTACGTTTAGAGGGGTTATGCTCACGGC
GCCTGCTGTGCGCGTGTACCCCAAACCGATTTTGAAACTGTTTGCGCCGC
TGTTGGGAACGCTTGCGCCATTGCTACCGGTACAGAGGCTCAAGTTTGAC
AGGAAGAGACGACGTGTGAAGAAGAATGAGGGTGATGGATACGATAGTCG
GGATGATCCGCTGGTTGTGCGTAGTCCTGTTCGAGCGAGGGTTGGCTACG
AGGTGCTGAAGAGCTGTGAGAAGATTATGAGCGAGGCGGAAAGGTTTCGT
GTGCCTGTTTTTGTGGCGCATTCTAGGAAGGATCGCGTGACAAACGCGAA
GGGGACTATTGACTTTCATGAGCGGATTGGAAGCAGTGATAAGACGGTTC
GGTTGTACGATGGAAGTGTGCATGACCTGCTGGCTGAGAAGAGGGACATG
GTCATGGGCGACATGGTGTCGTGGGCTTCGACGCGTCTGTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:122014..123105-

>Gchil6497.t1 ID=Gchil6497.t1|Name=Gchil6497.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00004390_pilon:122014..123105- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGGCCGCGCTGACTTGGCTGTTTCCCACCGGCCATCGCGTACCCTC
AGGCCGTTCGCCGTCGTTCACGCAGCCGTTGTTACCGTCTCCTCTTGCCA
CTCGCCCTTCGCCGCCACCCGGTGTACTGGCATGTCCGCTTCCTCAGCCG
CGCTCGCACGCGCGCCATGCGACTGTTGGGTGGCACGTAGATGAGTGGGC
TGACCACAACGCGTACTATGTGTTGAATTCACGCGGACAGCGCATCTTTG
TGCAAACGTGGAGACCACGTCAAGACAGGCGGCTGCTCTGGCATCGCGTT
TTCTCTCGTCGTCGAGCGGAACGCGGTATTATTTACATCATTCATGGGCT
CAATGACCATTCGAACAAGTATACGCGCGTGGCAAGGGCATGGGTGGATG
CGGGTTATGTTGTCATTGCGCACGATTTTCATGGTCACGGACGTTCGGAT
GGTTACAGGGCGTATACGTCGTCGATGCAGCACTATGTGGATGACGCACG
ACATACCATTCAGCACGCCAAGCTAAGACTGCCAAAACGACTTTCAACGC
TGCCCAGCTTCATTTTGGCTCATTCCTTGGGCGGTGCCGTCGCCATTCAC
CTAGCCCGAGATGCTCCGTGCGGTACGTTTAGAGGGGTTATGCTCACGGC
GCCTGCTGTGCGCGTGTACCCCAAACCGATTTTGAAACTGTTTGCGCCGC
TGTTGGGAACGCTTGCGCCATTGCTACCGGTACAGAGGCTCAAGTTTGAC
AGGAAGAGACGACGTGTGAAGAAGAATGAGGGTGATGGATACGATAGTCG
GGATGATCCGCTGGTTGTGCGTAGTCCTGTTCGAGCGAGGGTTGGCTACG
AGGTGCTGAAGAGCTGTGAGAAGATTATGAGCGAGGCGGAAAGGTTTCGT
GTGCCTGTTTTTGTGGCGCATTCTAGGAAGGATCGCGTGACAAACGCGAA
GGGGACTATTGACTTTCATGAGCGGATTGGAAGCAGTGATAAGACGGTTC
GGTTGTACGATGGAAGTGTGCATGACCTGCTGGCTGAGAAGAGGGACATG
GTCATGGGCGACATGGTGTCGTGGGCTTCGACGCGTCTGTGA
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