Gchil6495.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6495.t1
Unique NameGchil6495.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:120632..121110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45072
PFAMsPTPS
Max annot lvl2759|Eukaryota
Evalue3.15e-50
EggNOG OGs2CYMG@1|root,2S557@2759|Eukaryota
Description6-pyruvoyl tetrahydropterin synthase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6495Gchil6495Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 120632..121110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1Gchil6495.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 120632..121110 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1.start1Gchil6495.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 120632..120634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1.CDS1Gchil6495.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 120632..120712 +
Gchil6495.t1.CDS2Gchil6495.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 120805..121110 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1.exon1Gchil6495.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 120632..120712 +
Gchil6495.t1.exon2Gchil6495.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 120805..121110 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1.intron1Gchil6495.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 120713..120804 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6495.t1.stop1Gchil6495.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 121108..121110 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6495.t1 ID=Gchil6495.t1|Name=Gchil6495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=129bp
MGYSLGVRDSMMIAHSFTGKEFGPAEKMHGATFVVDCEFITDKLERTVNW
VVDIGEASTVLKEVLSEFNYKNLDELDAFRGQNTTTEFMCRQVFDRVAER
FKGRFVGAIRIKMKESHVAWASYTGVVE*
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spliced messenger RNA

>Gchil6495.t1 ID=Gchil6495.t1|Name=Gchil6495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp|location=Sequence derived from alignment at tig00004390_pilon:120632..121110+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTATTCTTTGGGTGTAAGAGATTCAATGATGATAGCTCATTCGTT
CACTGGCAAAGAGTTTGGCCCAGCTGAGAAGATGCATGGCGCTACGTTCG
TAGTAGACTGCGAATTTATAACTGACAAACTAGAGAGGACTGTCAACTGG
GTGGTAGATATTGGCGAGGCAAGTACAGTGTTAAAAGAAGTTTTGTCTGA
GTTTAACTACAAGAACTTGGACGAATTGGATGCGTTCAGAGGACAGAACA
CGACGACAGAGTTCATGTGTAGACAAGTATTCGACCGCGTCGCAGAAAGG
TTCAAGGGTAGATTCGTTGGCGCCATAAGAATCAAAATGAAGGAATCACA
TGTCGCGTGGGCAAGCTATACTGGAGTGGTAGAATGA
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protein sequence of Gchil6495.t1

>Gchil6495.t1 ID=Gchil6495.t1|Name=Gchil6495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=129bp
MGYSLGVRDSMMIAHSFTGKEFGPAEKMHGATFVVDCEFITDKLERTVNW
VVDIGEASTVLKEVLSEFNYKNLDELDAFRGQNTTTEFMCRQVFDRVAER
FKGRFVGAIRIKMKESHVAWASYTGVVE*
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mRNA from alignment at tig00004390_pilon:120632..121110+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6495.t1 ID=Gchil6495.t1|Name=Gchil6495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp|location=Sequence derived from alignment at tig00004390_pilon:120632..121110+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTATTCTTTGGGTGTAAGAGATTCAATGATGATAGCTCATTCGTT
CACTGGCAAAGAGTTTGGCCCAGCTGAGAAGGTAAGCCCCCACATTCGAT
AGCTCCATTTCACGATGCTCGCAAGCGAGTCAACGCTCAACAGAATAAAT
TTAGAAGCTAACTAAGAGAACAGATGCATGGCGCTACGTTCGTAGTAGAC
TGCGAATTTATAACTGACAAACTAGAGAGGACTGTCAACTGGGTGGTAGA
TATTGGCGAGGCAAGTACAGTGTTAAAAGAAGTTTTGTCTGAGTTTAACT
ACAAGAACTTGGACGAATTGGATGCGTTCAGAGGACAGAACACGACGACA
GAGTTCATGTGTAGACAAGTATTCGACCGCGTCGCAGAAAGGTTCAAGGG
TAGATTCGTTGGCGCCATAAGAATCAAAATGAAGGAATCACATGTCGCGT
GGGCAAGCTATACTGGAGTGGTAGAATGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:120632..121110+

>Gchil6495.t1 ID=Gchil6495.t1|Name=Gchil6495.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=387bp|location=Sequence derived from alignment at tig00004390_pilon:120632..121110+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTATTCTTTGGGTGTAAGAGATTCAATGATGATAGCTCATTCGTT
CACTGGCAAAGAGTTTGGCCCAGCTGAGAAGATGCATGGCGCTACGTTCG
TAGTAGACTGCGAATTTATAACTGACAAACTAGAGAGGACTGTCAACTGG
GTGGTAGATATTGGCGAGGCAAGTACAGTGTTAAAAGAAGTTTTGTCTGA
GTTTAACTACAAGAACTTGGACGAATTGGATGCGTTCAGAGGACAGAACA
CGACGACAGAGTTCATGTGTAGACAAGTATTCGACCGCGTCGCAGAAAGG
TTCAAGGGTAGATTCGTTGGCGCCATAAGAATCAAAATGAAGGAATCACA
TGTCGCGTGGGCAAGCTATACTGGAGTGGTAGAATGA
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