Gchil6493.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6493.t1
Unique NameGchil6493.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:118032..118569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002505270.1
PFAMsESSS
Max annot lvl3041|Chlorophyta
Evalue3.69e-13
EggNOG OGs2BDG4@1|root,2S12I@2759|Eukaryota,37V8R@33090|Viridiplantae,34IU3@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6493Gchil6493Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 118032..118569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1Gchil6493.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 118032..118569 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1.stop1Gchil6493.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 118032..118034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1.CDS1Gchil6493.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 118032..118264 -
Gchil6493.t1.CDS2Gchil6493.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 118488..118569 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1.exon1Gchil6493.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 118032..118264 -
Gchil6493.t1.exon2Gchil6493.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 118488..118569 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1.intron1Gchil6493.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 118265..118487 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6493.t1.start1Gchil6493.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 118567..118569 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6493.t1 ID=Gchil6493.t1|Name=Gchil6493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=105bp
MALRVRALTRAFHSSRLARGGGGGGGLGPFGETEVNEPGGRLFGEAIRKP
GERRKLFDWEIPYLGTLVLAGLILGVGLNSRPGMSANEWAKQEAKARMEA
RGEI*
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spliced messenger RNA

>Gchil6493.t1 ID=Gchil6493.t1|Name=Gchil6493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00004390_pilon:118032..118569- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGAGAGTTAGAGCACTGACAAGGGCCTTCCATTCATCTCGGCT
GGCTCGCGGCGGTGGTGGTGGTGGCGGACTTGGACCCTTTGGGGAGACGG
AAGTGAACGAGCCTGGTGGTCGTTTATTTGGTGAAGCGATTCGAAAACCA
GGAGAGCGAAGAAAGCTGTTCGATTGGGAGATTCCTTACCTCGGAACGCT
GGTTCTCGCGGGATTAATACTCGGGGTCGGACTTAACTCTAGACCAGGTA
TGTCCGCCAATGAATGGGCGAAACAGGAGGCAAAAGCGCGCATGGAAGCC
CGTGGAGAGATTTAA
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protein sequence of Gchil6493.t1

>Gchil6493.t1 ID=Gchil6493.t1|Name=Gchil6493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=105bp
MALRVRALTRAFHSSRLARGGGGGGGLGPFGETEVNEPGGRLFGEAIRKP
GERRKLFDWEIPYLGTLVLAGLILGVGLNSRPGMSANEWAKQEAKARMEA
RGEI*
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mRNA from alignment at tig00004390_pilon:118032..118569-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6493.t1 ID=Gchil6493.t1|Name=Gchil6493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp|location=Sequence derived from alignment at tig00004390_pilon:118032..118569- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTGAGAGTTAGAGCACTGACAAGGGCCTTCCATTCATCTCGGCT
GGCTCGCGGCGGTGGTGGTGGTGGCGGACTTGGTAAGTTCTCATAGTTGA
AATAGAGATCGCGACGCAAGAACCGCGAGAGCAACGACCTATTGAGGAAA
TTGCATCCGGAAGGCAAAGATATCATTGGAATAGTCTAGCAACGTTCTTC
ACGTTAGAAGATCCTTTTCCTCGGGACATATCTGCGTTTTTCGGTGGCCT
ACTGACCTCTGTTTCGATAAACTACGAAAAACTACGAAACGAATGCGTCG
CGTAGGACCCTTTGGGGAGACGGAAGTGAACGAGCCTGGTGGTCGTTTAT
TTGGTGAAGCGATTCGAAAACCAGGAGAGCGAAGAAAGCTGTTCGATTGG
GAGATTCCTTACCTCGGAACGCTGGTTCTCGCGGGATTAATACTCGGGGT
CGGACTTAACTCTAGACCAGGTATGTCCGCCAATGAATGGGCGAAACAGG
AGGCAAAAGCGCGCATGGAAGCCCGTGGAGAGATTTAA
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Coding sequence (CDS) from alignment at tig00004390_pilon:118032..118569-

>Gchil6493.t1 ID=Gchil6493.t1|Name=Gchil6493.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=315bp|location=Sequence derived from alignment at tig00004390_pilon:118032..118569- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTGAGAGTTAGAGCACTGACAAGGGCCTTCCATTCATCTCGGCT
GGCTCGCGGCGGTGGTGGTGGTGGCGGACTTGGACCCTTTGGGGAGACGG
AAGTGAACGAGCCTGGTGGTCGTTTATTTGGTGAAGCGATTCGAAAACCA
GGAGAGCGAAGAAAGCTGTTCGATTGGGAGATTCCTTACCTCGGAACGCT
GGTTCTCGCGGGATTAATACTCGGGGTCGGACTTAACTCTAGACCAGGTA
TGTCCGCCAATGAATGGGCGAAACAGGAGGCAAAAGCGCGCATGGAAGCC
CGTGGAGAGATTTAA
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