Gchil642.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil642.t1
Unique NameGchil642.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length142
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:725792..726315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005849675.1
PFAMsGlutaredoxin
Max annot lvl3041|Chlorophyta
KEGG koko:K03676
Evalue1.47e-16
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,37VA2@33090|Viridiplantae,34N33@3041|Chlorophyta
DescriptionGlutaredoxin
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil642Gchil642Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 725792..726315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1Gchil642.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 725792..726315 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1.start1Gchil642.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 725792..725794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1.CDS1Gchil642.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 725792..725872 +
Gchil642.t1.CDS2Gchil642.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 725971..726315 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1.exon1Gchil642.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 725792..725872 +
Gchil642.t1.exon2Gchil642.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 725971..726315 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1.intron1Gchil642.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 725873..725970 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil642.t1.stop1Gchil642.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 726313..726315 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil642.t1 ID=Gchil642.t1|Name=Gchil642.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=142bp
MGNTPSKSPEAVAELLVEKTILGNNVVIFSKRNCGYCDAAKRALSTATRR
LVKEGCDVPKAAVIELDDGSVSPEIAREIQSILMKMTGASTVPRVFLNQT
FLGGASETLQYAQGGGLHFALMKAGKCGIDAFDANESYGKA*
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spliced messenger RNA

>Gchil642.t1 ID=Gchil642.t1|Name=Gchil642.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp|location=Sequence derived from alignment at tig00004380_pilon:725792..726315+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACACACCCTCAAAATCTCCAGAAGCAGTTGCCGAACTTCTTGT
TGAGAAGACAATACTCGGTAACAACGTTGTCATATTCAGCAAGAGGAACT
GTGGATACTGCGATGCGGCCAAGCGAGCGCTGTCCACAGCGACGCGACGC
CTTGTTAAAGAAGGGTGTGACGTCCCGAAGGCTGCTGTTATTGAACTGGA
CGATGGAAGTGTTTCTCCGGAGATTGCGAGGGAAATTCAGTCCATATTGA
TGAAAATGACAGGTGCTTCAACAGTTCCCAGAGTTTTCCTCAATCAAACT
TTCTTGGGTGGTGCCTCTGAGACACTTCAGTATGCACAGGGCGGGGGACT
GCATTTTGCACTTATGAAGGCTGGAAAGTGCGGTATCGATGCATTTGATG
CCAATGAAAGCTATGGAAAGGCATGA
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protein sequence of Gchil642.t1

>Gchil642.t1 ID=Gchil642.t1|Name=Gchil642.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=142bp
MGNTPSKSPEAVAELLVEKTILGNNVVIFSKRNCGYCDAAKRALSTATRR
LVKEGCDVPKAAVIELDDGSVSPEIAREIQSILMKMTGASTVPRVFLNQT
FLGGASETLQYAQGGGLHFALMKAGKCGIDAFDANESYGKA*
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mRNA from alignment at tig00004380_pilon:725792..726315+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil642.t1 ID=Gchil642.t1|Name=Gchil642.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp|location=Sequence derived from alignment at tig00004380_pilon:725792..726315+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACACACCCTCAAAATCTCCAGAAGCAGTTGCCGAACTTCTTGT
TGAGAAGACAATACTCGGTAACAACGTTGTCGTAAGTATAGTGCTCGTTT
TGTAAACGGACAGGCCAGTTTCCTTCATCCAACTAACCCTTCAAACATTT
TGATGAACAATTTGAACAACTATAAAAAGATATTCAGCAAGAGGAACTGT
GGATACTGCGATGCGGCCAAGCGAGCGCTGTCCACAGCGACGCGACGCCT
TGTTAAAGAAGGGTGTGACGTCCCGAAGGCTGCTGTTATTGAACTGGACG
ATGGAAGTGTTTCTCCGGAGATTGCGAGGGAAATTCAGTCCATATTGATG
AAAATGACAGGTGCTTCAACAGTTCCCAGAGTTTTCCTCAATCAAACTTT
CTTGGGTGGTGCCTCTGAGACACTTCAGTATGCACAGGGCGGGGGACTGC
ATTTTGCACTTATGAAGGCTGGAAAGTGCGGTATCGATGCATTTGATGCC
AATGAAAGCTATGGAAAGGCATGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:725792..726315+

>Gchil642.t1 ID=Gchil642.t1|Name=Gchil642.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=426bp|location=Sequence derived from alignment at tig00004380_pilon:725792..726315+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAACACACCCTCAAAATCTCCAGAAGCAGTTGCCGAACTTCTTGT
TGAGAAGACAATACTCGGTAACAACGTTGTCATATTCAGCAAGAGGAACT
GTGGATACTGCGATGCGGCCAAGCGAGCGCTGTCCACAGCGACGCGACGC
CTTGTTAAAGAAGGGTGTGACGTCCCGAAGGCTGCTGTTATTGAACTGGA
CGATGGAAGTGTTTCTCCGGAGATTGCGAGGGAAATTCAGTCCATATTGA
TGAAAATGACAGGTGCTTCAACAGTTCCCAGAGTTTTCCTCAATCAAACT
TTCTTGGGTGGTGCCTCTGAGACACTTCAGTATGCACAGGGCGGGGGACT
GCATTTTGCACTTATGAAGGCTGGAAAGTGCGGTATCGATGCATTTGATG
CCAATGAAAGCTATGGAAAGGCATGA
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