Gchil6401.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6401.t1
Unique NameGchil6401.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:665334..665651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6401Gchil6401Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 665334..665651 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6401.t1.start1Gchil6401.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 665334..665336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6401.t1.CDS1Gchil6401.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 665334..665651 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6401.t1.exon1Gchil6401.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 665334..665651 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6401.t1.stop1Gchil6401.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 665649..665651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6401.t1Gchil6401.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 665334..665651 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6401.t1 ID=Gchil6401.t1|Name=Gchil6401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=106bp
MVRSPPTPSPVQIACSHRYDVKITGDFPGFLPSFLMDEKHAVEGQSNTSS
RGVGSESGVMKSSVLGIRKEDSQKYLEKAIEQVSLSDVGSALMLHLRWSQ
EGKCS*
back to top

spliced messenger RNA

>Gchil6401.t1 ID=Gchil6401.t1|Name=Gchil6401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000196_pilon:665334..665651+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGTTCGCCCCCGACCCCCAGTCCTGTCCAGATTGCGTGTTCGCA
TCGTTACGACGTGAAGATTACAGGCGATTTTCCAGGCTTTTTGCCGTCGT
TTCTTATGGATGAGAAGCATGCGGTTGAGGGCCAATCGAACACTAGCTCC
AGAGGCGTAGGCAGTGAAAGCGGCGTCATGAAGTCTAGTGTTTTGGGAAT
ACGGAAGGAGGACTCTCAGAAATATCTGGAGAAGGCGATTGAGCAGGTGT
CGCTCAGCGATGTTGGCAGCGCGTTGATGTTGCATCTGCGATGGTCCCAA
GAAGGCAAGTGCTCGTAG
back to top

protein sequence of Gchil6401.t1

>Gchil6401.t1 ID=Gchil6401.t1|Name=Gchil6401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=106bp
MVRSPPTPSPVQIACSHRYDVKITGDFPGFLPSFLMDEKHAVEGQSNTSS
RGVGSESGVMKSSVLGIRKEDSQKYLEKAIEQVSLSDVGSALMLHLRWSQ
EGKCS*
back to top

mRNA from alignment at tig00000196_pilon:665334..665651+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6401.t1 ID=Gchil6401.t1|Name=Gchil6401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=318bp|location=Sequence derived from alignment at tig00000196_pilon:665334..665651+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGTTCGCCCCCGACCCCCAGTCCTGTCCAGATTGCGTGTTCGCA
TCGTTACGACGTGAAGATTACAGGCGATTTTCCAGGCTTTTTGCCGTCGT
TTCTTATGGATGAGAAGCATGCGGTTGAGGGCCAATCGAACACTAGCTCC
AGAGGCGTAGGCAGTGAAAGCGGCGTCATGAAGTCTAGTGTTTTGGGAAT
ACGGAAGGAGGACTCTCAGAAATATCTGGAGAAGGCGATTGAGCAGGTGT
CGCTCAGCGATGTTGGCAGCGCGTTGATGTTGCATCTGCGATGGTCCCAA
GAAGGCAAGTGCTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000196_pilon:665334..665651+

>Gchil6401.t1 ID=Gchil6401.t1|Name=Gchil6401.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=318bp|location=Sequence derived from alignment at tig00000196_pilon:665334..665651+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGCGTTCGCCCCCGACCCCCAGTCCTGTCCAGATTGCGTGTTCGCA
TCGTTACGACGTGAAGATTACAGGCGATTTTCCAGGCTTTTTGCCGTCGT
TTCTTATGGATGAGAAGCATGCGGTTGAGGGCCAATCGAACACTAGCTCC
AGAGGCGTAGGCAGTGAAAGCGGCGTCATGAAGTCTAGTGTTTTGGGAAT
ACGGAAGGAGGACTCTCAGAAATATCTGGAGAAGGCGATTGAGCAGGTGT
CGCTCAGCGATGTTGGCAGCGCGTTGATGTTGCATCTGCGATGGTCCCAA
GAAGGCAAGTGCTCGTAG
back to top