Gchil6399.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6399.t1
Unique NameGchil6399.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length812
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:659257..661692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704294.1
PFAMsDUF295,F-box,RHD3
Max annot lvl2759|Eukaryota
Evalue1.82e-127
EggNOG OGsKOG2203@1|root,KOG2203@2759|Eukaryota
DescriptionGTP binding
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6399Gchil6399Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 659257..661692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6399.t1.stop1Gchil6399.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 659257..659259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6399.t1.CDS1Gchil6399.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 659257..661692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6399.t1.exon1Gchil6399.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 659257..661692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6399.t1.start1Gchil6399.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 661690..661692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6399.t1Gchil6399.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 659257..661692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6399.t1 ID=Gchil6399.t1|Name=Gchil6399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=812bp
MTSAIPDESPAVEAEASHMVQVVNYEEQFNDDLEIFLQAKRVSQLGFDYN
VTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDVEAGI
LVMDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRNNAS
NMPLLRTIMELDLQLFFGSTGSEADKKRMPKTKLLFVIRDYDSTPFEKLC
SSLREDLDNIWNTINKPPAALDTPITDYFDLDFEALPHKVYCPKEFEEKV
GELKKRFHSGDIFMKDYSRGVAADGFSEYARSVWETIRANKELDIPSQKE
MLAHVRCEQIAKDVFFTFENSIGPLKEDLLPADRSMPTIVPGLFSTLLEN
CGGALSRYNEGASRYSKAVADMKADDVRAHLSSECKMLFDAQINAATDAA
LKQFQEIVNGSEDEPVSEPWLNWNEHSKIAMESAMKIFDDACTTTALCEN
VTDAIAMKAHPLGFSVTSSTMARKRLEKTLDTELKRETKRVLSESRAHCL
ATFKSAFKAPMTTVLESVPDELWSRTSEVADVSWEATAEEAKAVYGERGL
ALEEEKAKTLEDALKRECYNSAVDDIKAAIGSPSNMLLRMMKRFEDAFRF
DERGVPRHFGPSEDIEALFVSAREKAEILAELLSEVRLQGSLCSTTTTAS
RGMNKKGSEVTIIDSNAQADLKDKLKRQSGAIFMEAKRAQEAARITTKVP
IWLIGVILILGWNEFMAVLRNPLLLMLTIIVVPMVYVGYTLDAPTYLAPA
VMATLKPIVDQAKDFLEQASNAPASQSAPMPAPLPISPSSESTMVSGNRT
EDAAVAVAKEI*
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spliced messenger RNA

>Gchil6399.t1 ID=Gchil6399.t1|Name=Gchil6399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at tig00000196_pilon:659257..661692- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCGGCTATCCCAGATGAATCCCCTGCTGTTGAGGCGGAAGCCTC
TCACATGGTACAGGTAGTTAACTATGAGGAGCAATTTAACGACGACTTAG
AGATATTTCTACAAGCAAAGCGCGTCTCGCAACTGGGATTTGACTATAAT
GTGACGGCAATCATGGGACCTCAGTCTTCCGGAAAGTCCACTTTGATGAA
CATGCTGTTTGGTACAAAATTTCCCACAATGGACAGCGGAGGTGGTCGCT
ATCAGGTTACACAGGGAGTTTGGCTCGGGCGAGATGTAGAAGCGGGCATT
CTCGTTATGGATTTGGAAGGAACTGATTCGCGGGAGAGAGGGGAAGATGC
AGCCACTTACGAAAGAAAAAGTGCATTGTTCGCCTTGGCTCTTGCCGAGG
TGCTGGTTGTCAATGTGTGGATCCACGACGTCGGTCGAAACAACGCTTCC
AACATGCCTCTATTGCGAACCATTATGGAGCTTGACCTTCAGCTGTTCTT
CGGATCGACTGGCTCGGAAGCTGATAAGAAGCGAATGCCGAAGACGAAGC
TGCTGTTTGTTATCCGCGATTATGATTCTACACCATTTGAGAAGCTTTGC
TCTTCTCTTCGAGAGGATTTAGATAACATATGGAATACCATTAACAAACC
ACCAGCTGCTTTGGATACTCCTATCACCGATTACTTTGACCTCGATTTTG
AAGCATTACCGCACAAAGTTTATTGCCCAAAGGAATTCGAAGAGAAGGTG
GGAGAACTCAAGAAACGTTTTCACAGCGGCGATATCTTTATGAAGGATTA
CAGCCGTGGAGTTGCCGCAGACGGCTTTTCAGAATATGCAAGGTCGGTGT
GGGAAACTATTCGCGCGAATAAGGAGCTTGATATTCCGTCGCAAAAAGAA
ATGTTAGCTCATGTTCGATGTGAGCAAATTGCGAAGGATGTATTCTTCAC
CTTTGAAAATTCAATCGGGCCGCTCAAAGAAGATCTTCTTCCCGCTGATC
GCTCGATGCCGACGATCGTCCCCGGATTGTTTAGCACTCTGTTGGAAAAT
TGCGGAGGCGCGTTGAGCAGGTACAACGAAGGTGCTTCACGTTACTCGAA
GGCAGTTGCAGATATGAAAGCAGATGATGTTCGTGCGCACCTTTCGTCCG
AGTGCAAGATGCTTTTTGATGCTCAAATCAATGCCGCTACCGATGCGGCT
CTGAAGCAATTTCAGGAGATCGTGAACGGCAGCGAAGATGAGCCCGTATC
TGAGCCGTGGCTCAATTGGAATGAGCACTCCAAGATCGCCATGGAAAGCG
CAATGAAAATATTTGATGATGCGTGTACGACGACCGCATTGTGCGAGAAT
GTTACGGATGCTATTGCGATGAAAGCGCATCCTCTTGGTTTCTCCGTTAC
ATCTTCGACAATGGCACGAAAGAGGCTGGAAAAGACTTTGGACACTGAGC
TCAAACGCGAAACAAAAAGAGTTCTCTCGGAATCTCGGGCGCATTGCCTG
GCGACCTTCAAGTCTGCGTTTAAGGCCCCCATGACGACTGTCTTGGAGAG
TGTCCCCGATGAGCTGTGGAGTCGTACTTCCGAAGTTGCCGATGTTTCGT
GGGAAGCAACGGCAGAAGAGGCCAAGGCTGTGTACGGTGAGAGGGGACTT
GCATTGGAGGAGGAAAAAGCGAAGACACTAGAAGATGCTTTGAAGCGCGA
GTGTTACAATTCCGCAGTTGATGATATCAAGGCTGCAATCGGCTCTCCAT
CGAACATGCTGTTGAGAATGATGAAGAGATTTGAAGATGCGTTCCGCTTT
GATGAAAGAGGGGTACCTCGGCATTTCGGGCCGAGTGAGGATATTGAAGC
GCTATTTGTCTCTGCGCGCGAGAAAGCAGAAATTCTTGCCGAGTTACTGT
CGGAAGTGAGGTTACAAGGTTCACTGTGTAGTACGACAACGACGGCCAGC
CGAGGCATGAACAAGAAGGGAAGTGAGGTAACGATCATTGACTCAAACGC
ACAAGCCGACCTTAAGGACAAGCTCAAGCGACAGAGCGGGGCCATCTTCA
TGGAGGCGAAACGTGCGCAAGAAGCTGCTAGGATCACAACCAAGGTTCCG
ATCTGGCTTATCGGCGTGATCTTGATTCTTGGCTGGAACGAGTTCATGGC
CGTGTTGCGAAACCCGCTGCTGCTAATGCTCACGATTATCGTTGTCCCTA
TGGTGTACGTAGGATATACGTTGGATGCCCCTACGTACTTGGCACCGGCG
GTGATGGCCACCCTGAAGCCAATCGTGGATCAAGCCAAAGACTTTCTGGA
ACAGGCCTCGAACGCTCCCGCGAGTCAGAGCGCCCCAATGCCCGCACCTC
TCCCTATCTCCCCATCGAGCGAAAGTACGATGGTATCAGGTAATCGCACG
GAGGATGCGGCAGTAGCAGTGGCAAAAGAAATCTGA
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protein sequence of Gchil6399.t1

>Gchil6399.t1 ID=Gchil6399.t1|Name=Gchil6399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=812bp
MTSAIPDESPAVEAEASHMVQVVNYEEQFNDDLEIFLQAKRVSQLGFDYN
VTAIMGPQSSGKSTLMNMLFGTKFPTMDSGGGRYQVTQGVWLGRDVEAGI
LVMDLEGTDSRERGEDAATYERKSALFALALAEVLVVNVWIHDVGRNNAS
NMPLLRTIMELDLQLFFGSTGSEADKKRMPKTKLLFVIRDYDSTPFEKLC
SSLREDLDNIWNTINKPPAALDTPITDYFDLDFEALPHKVYCPKEFEEKV
GELKKRFHSGDIFMKDYSRGVAADGFSEYARSVWETIRANKELDIPSQKE
MLAHVRCEQIAKDVFFTFENSIGPLKEDLLPADRSMPTIVPGLFSTLLEN
CGGALSRYNEGASRYSKAVADMKADDVRAHLSSECKMLFDAQINAATDAA
LKQFQEIVNGSEDEPVSEPWLNWNEHSKIAMESAMKIFDDACTTTALCEN
VTDAIAMKAHPLGFSVTSSTMARKRLEKTLDTELKRETKRVLSESRAHCL
ATFKSAFKAPMTTVLESVPDELWSRTSEVADVSWEATAEEAKAVYGERGL
ALEEEKAKTLEDALKRECYNSAVDDIKAAIGSPSNMLLRMMKRFEDAFRF
DERGVPRHFGPSEDIEALFVSAREKAEILAELLSEVRLQGSLCSTTTTAS
RGMNKKGSEVTIIDSNAQADLKDKLKRQSGAIFMEAKRAQEAARITTKVP
IWLIGVILILGWNEFMAVLRNPLLLMLTIIVVPMVYVGYTLDAPTYLAPA
VMATLKPIVDQAKDFLEQASNAPASQSAPMPAPLPISPSSESTMVSGNRT
EDAAVAVAKEI*
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mRNA from alignment at tig00000196_pilon:659257..661692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6399.t1 ID=Gchil6399.t1|Name=Gchil6399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2436bp|location=Sequence derived from alignment at tig00000196_pilon:659257..661692- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCGGCTATCCCAGATGAATCCCCTGCTGTTGAGGCGGAAGCCTC
TCACATGGTACAGGTAGTTAACTATGAGGAGCAATTTAACGACGACTTAG
AGATATTTCTACAAGCAAAGCGCGTCTCGCAACTGGGATTTGACTATAAT
GTGACGGCAATCATGGGACCTCAGTCTTCCGGAAAGTCCACTTTGATGAA
CATGCTGTTTGGTACAAAATTTCCCACAATGGACAGCGGAGGTGGTCGCT
ATCAGGTTACACAGGGAGTTTGGCTCGGGCGAGATGTAGAAGCGGGCATT
CTCGTTATGGATTTGGAAGGAACTGATTCGCGGGAGAGAGGGGAAGATGC
AGCCACTTACGAAAGAAAAAGTGCATTGTTCGCCTTGGCTCTTGCCGAGG
TGCTGGTTGTCAATGTGTGGATCCACGACGTCGGTCGAAACAACGCTTCC
AACATGCCTCTATTGCGAACCATTATGGAGCTTGACCTTCAGCTGTTCTT
CGGATCGACTGGCTCGGAAGCTGATAAGAAGCGAATGCCGAAGACGAAGC
TGCTGTTTGTTATCCGCGATTATGATTCTACACCATTTGAGAAGCTTTGC
TCTTCTCTTCGAGAGGATTTAGATAACATATGGAATACCATTAACAAACC
ACCAGCTGCTTTGGATACTCCTATCACCGATTACTTTGACCTCGATTTTG
AAGCATTACCGCACAAAGTTTATTGCCCAAAGGAATTCGAAGAGAAGGTG
GGAGAACTCAAGAAACGTTTTCACAGCGGCGATATCTTTATGAAGGATTA
CAGCCGTGGAGTTGCCGCAGACGGCTTTTCAGAATATGCAAGGTCGGTGT
GGGAAACTATTCGCGCGAATAAGGAGCTTGATATTCCGTCGCAAAAAGAA
ATGTTAGCTCATGTTCGATGTGAGCAAATTGCGAAGGATGTATTCTTCAC
CTTTGAAAATTCAATCGGGCCGCTCAAAGAAGATCTTCTTCCCGCTGATC
GCTCGATGCCGACGATCGTCCCCGGATTGTTTAGCACTCTGTTGGAAAAT
TGCGGAGGCGCGTTGAGCAGGTACAACGAAGGTGCTTCACGTTACTCGAA
GGCAGTTGCAGATATGAAAGCAGATGATGTTCGTGCGCACCTTTCGTCCG
AGTGCAAGATGCTTTTTGATGCTCAAATCAATGCCGCTACCGATGCGGCT
CTGAAGCAATTTCAGGAGATCGTGAACGGCAGCGAAGATGAGCCCGTATC
TGAGCCGTGGCTCAATTGGAATGAGCACTCCAAGATCGCCATGGAAAGCG
CAATGAAAATATTTGATGATGCGTGTACGACGACCGCATTGTGCGAGAAT
GTTACGGATGCTATTGCGATGAAAGCGCATCCTCTTGGTTTCTCCGTTAC
ATCTTCGACAATGGCACGAAAGAGGCTGGAAAAGACTTTGGACACTGAGC
TCAAACGCGAAACAAAAAGAGTTCTCTCGGAATCTCGGGCGCATTGCCTG
GCGACCTTCAAGTCTGCGTTTAAGGCCCCCATGACGACTGTCTTGGAGAG
TGTCCCCGATGAGCTGTGGAGTCGTACTTCCGAAGTTGCCGATGTTTCGT
GGGAAGCAACGGCAGAAGAGGCCAAGGCTGTGTACGGTGAGAGGGGACTT
GCATTGGAGGAGGAAAAAGCGAAGACACTAGAAGATGCTTTGAAGCGCGA
GTGTTACAATTCCGCAGTTGATGATATCAAGGCTGCAATCGGCTCTCCAT
CGAACATGCTGTTGAGAATGATGAAGAGATTTGAAGATGCGTTCCGCTTT
GATGAAAGAGGGGTACCTCGGCATTTCGGGCCGAGTGAGGATATTGAAGC
GCTATTTGTCTCTGCGCGCGAGAAAGCAGAAATTCTTGCCGAGTTACTGT
CGGAAGTGAGGTTACAAGGTTCACTGTGTAGTACGACAACGACGGCCAGC
CGAGGCATGAACAAGAAGGGAAGTGAGGTAACGATCATTGACTCAAACGC
ACAAGCCGACCTTAAGGACAAGCTCAAGCGACAGAGCGGGGCCATCTTCA
TGGAGGCGAAACGTGCGCAAGAAGCTGCTAGGATCACAACCAAGGTTCCG
ATCTGGCTTATCGGCGTGATCTTGATTCTTGGCTGGAACGAGTTCATGGC
CGTGTTGCGAAACCCGCTGCTGCTAATGCTCACGATTATCGTTGTCCCTA
TGGTGTACGTAGGATATACGTTGGATGCCCCTACGTACTTGGCACCGGCG
GTGATGGCCACCCTGAAGCCAATCGTGGATCAAGCCAAAGACTTTCTGGA
ACAGGCCTCGAACGCTCCCGCGAGTCAGAGCGCCCCAATGCCCGCACCTC
TCCCTATCTCCCCATCGAGCGAAAGTACGATGGTATCAGGTAATCGCACG
GAGGATGCGGCAGTAGCAGTGGCAAAAGAAATCTGA
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Coding sequence (CDS) from alignment at tig00000196_pilon:659257..661692-

>Gchil6399.t1 ID=Gchil6399.t1|Name=Gchil6399.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2436bp|location=Sequence derived from alignment at tig00000196_pilon:659257..661692- (Gracilaria chilensis NLEC103_M9 male)
ATGACTTCGGCTATCCCAGATGAATCCCCTGCTGTTGAGGCGGAAGCCTC
TCACATGGTACAGGTAGTTAACTATGAGGAGCAATTTAACGACGACTTAG
AGATATTTCTACAAGCAAAGCGCGTCTCGCAACTGGGATTTGACTATAAT
GTGACGGCAATCATGGGACCTCAGTCTTCCGGAAAGTCCACTTTGATGAA
CATGCTGTTTGGTACAAAATTTCCCACAATGGACAGCGGAGGTGGTCGCT
ATCAGGTTACACAGGGAGTTTGGCTCGGGCGAGATGTAGAAGCGGGCATT
CTCGTTATGGATTTGGAAGGAACTGATTCGCGGGAGAGAGGGGAAGATGC
AGCCACTTACGAAAGAAAAAGTGCATTGTTCGCCTTGGCTCTTGCCGAGG
TGCTGGTTGTCAATGTGTGGATCCACGACGTCGGTCGAAACAACGCTTCC
AACATGCCTCTATTGCGAACCATTATGGAGCTTGACCTTCAGCTGTTCTT
CGGATCGACTGGCTCGGAAGCTGATAAGAAGCGAATGCCGAAGACGAAGC
TGCTGTTTGTTATCCGCGATTATGATTCTACACCATTTGAGAAGCTTTGC
TCTTCTCTTCGAGAGGATTTAGATAACATATGGAATACCATTAACAAACC
ACCAGCTGCTTTGGATACTCCTATCACCGATTACTTTGACCTCGATTTTG
AAGCATTACCGCACAAAGTTTATTGCCCAAAGGAATTCGAAGAGAAGGTG
GGAGAACTCAAGAAACGTTTTCACAGCGGCGATATCTTTATGAAGGATTA
CAGCCGTGGAGTTGCCGCAGACGGCTTTTCAGAATATGCAAGGTCGGTGT
GGGAAACTATTCGCGCGAATAAGGAGCTTGATATTCCGTCGCAAAAAGAA
ATGTTAGCTCATGTTCGATGTGAGCAAATTGCGAAGGATGTATTCTTCAC
CTTTGAAAATTCAATCGGGCCGCTCAAAGAAGATCTTCTTCCCGCTGATC
GCTCGATGCCGACGATCGTCCCCGGATTGTTTAGCACTCTGTTGGAAAAT
TGCGGAGGCGCGTTGAGCAGGTACAACGAAGGTGCTTCACGTTACTCGAA
GGCAGTTGCAGATATGAAAGCAGATGATGTTCGTGCGCACCTTTCGTCCG
AGTGCAAGATGCTTTTTGATGCTCAAATCAATGCCGCTACCGATGCGGCT
CTGAAGCAATTTCAGGAGATCGTGAACGGCAGCGAAGATGAGCCCGTATC
TGAGCCGTGGCTCAATTGGAATGAGCACTCCAAGATCGCCATGGAAAGCG
CAATGAAAATATTTGATGATGCGTGTACGACGACCGCATTGTGCGAGAAT
GTTACGGATGCTATTGCGATGAAAGCGCATCCTCTTGGTTTCTCCGTTAC
ATCTTCGACAATGGCACGAAAGAGGCTGGAAAAGACTTTGGACACTGAGC
TCAAACGCGAAACAAAAAGAGTTCTCTCGGAATCTCGGGCGCATTGCCTG
GCGACCTTCAAGTCTGCGTTTAAGGCCCCCATGACGACTGTCTTGGAGAG
TGTCCCCGATGAGCTGTGGAGTCGTACTTCCGAAGTTGCCGATGTTTCGT
GGGAAGCAACGGCAGAAGAGGCCAAGGCTGTGTACGGTGAGAGGGGACTT
GCATTGGAGGAGGAAAAAGCGAAGACACTAGAAGATGCTTTGAAGCGCGA
GTGTTACAATTCCGCAGTTGATGATATCAAGGCTGCAATCGGCTCTCCAT
CGAACATGCTGTTGAGAATGATGAAGAGATTTGAAGATGCGTTCCGCTTT
GATGAAAGAGGGGTACCTCGGCATTTCGGGCCGAGTGAGGATATTGAAGC
GCTATTTGTCTCTGCGCGCGAGAAAGCAGAAATTCTTGCCGAGTTACTGT
CGGAAGTGAGGTTACAAGGTTCACTGTGTAGTACGACAACGACGGCCAGC
CGAGGCATGAACAAGAAGGGAAGTGAGGTAACGATCATTGACTCAAACGC
ACAAGCCGACCTTAAGGACAAGCTCAAGCGACAGAGCGGGGCCATCTTCA
TGGAGGCGAAACGTGCGCAAGAAGCTGCTAGGATCACAACCAAGGTTCCG
ATCTGGCTTATCGGCGTGATCTTGATTCTTGGCTGGAACGAGTTCATGGC
CGTGTTGCGAAACCCGCTGCTGCTAATGCTCACGATTATCGTTGTCCCTA
TGGTGTACGTAGGATATACGTTGGATGCCCCTACGTACTTGGCACCGGCG
GTGATGGCCACCCTGAAGCCAATCGTGGATCAAGCCAAAGACTTTCTGGA
ACAGGCCTCGAACGCTCCCGCGAGTCAGAGCGCCCCAATGCCCGCACCTC
TCCCTATCTCCCCATCGAGCGAAAGTACGATGGTATCAGGTAATCGCACG
GAGGATGCGGCAGTAGCAGTGGCAAAAGAAATCTGA
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