Gchil6392.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6392.t1
Unique NameGchil6392.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:616250..616726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog273121.WS1299
PFAMsHSP20
Max annot lvl29547|Epsilonproteobacteria
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue1.47e-07
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,42U0T@68525|delta/epsilon subdivisions,2YPJX@29547|Epsilonproteobacteria
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6392Gchil6392Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 616250..616726 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6392.t1.stop1Gchil6392.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 616250..616252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6392.t1.CDS1Gchil6392.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 616250..616726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6392.t1.exon1Gchil6392.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 616250..616726 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6392.t1.start1Gchil6392.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 616724..616726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6392.t1Gchil6392.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 616250..616726 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6392.t1 ID=Gchil6392.t1|Name=Gchil6392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=159bp
MEPLFPFSFPNRELRRLRQLADQMENSFRSSDGTQHHVPNYEYHREQDKV
HLEVELPGVQKEHIEVEMRGVNLCITGRRFKSIGLVVEEQKDDAAQNNTT
DVEMGEGKNASMVYELQVKVGENVDEGAIKAEHRDGILKMMIPLKTETGA
RKIAITQG*
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spliced messenger RNA

>Gchil6392.t1 ID=Gchil6392.t1|Name=Gchil6392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000196_pilon:616250..616726- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCACTCTTCCCGTTCTCCTTCCCCAACCGCGAGCTGCGCAGGTT
GCGCCAGCTAGCCGATCAAATGGAAAACAGCTTTAGGTCTTCTGATGGCA
CCCAGCATCACGTTCCGAACTACGAATACCACAGAGAGCAGGACAAGGTT
CACTTGGAAGTCGAGTTACCAGGTGTGCAAAAGGAACATATCGAGGTTGA
GATGCGCGGTGTCAACCTGTGCATCACCGGGCGTCGTTTCAAGTCGATTG
GACTAGTTGTCGAGGAACAGAAGGATGATGCCGCACAGAATAACACTACC
GACGTCGAAATGGGTGAAGGAAAGAACGCTAGCATGGTTTACGAATTGCA
GGTGAAGGTTGGCGAAAACGTGGACGAAGGCGCAATTAAGGCAGAGCACA
GGGATGGAATCCTCAAAATGATGATTCCGCTTAAAACCGAGACTGGCGCT
CGCAAGATTGCTATCACTCAGGGATAA
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protein sequence of Gchil6392.t1

>Gchil6392.t1 ID=Gchil6392.t1|Name=Gchil6392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=159bp
MEPLFPFSFPNRELRRLRQLADQMENSFRSSDGTQHHVPNYEYHREQDKV
HLEVELPGVQKEHIEVEMRGVNLCITGRRFKSIGLVVEEQKDDAAQNNTT
DVEMGEGKNASMVYELQVKVGENVDEGAIKAEHRDGILKMMIPLKTETGA
RKIAITQG*
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mRNA from alignment at tig00000196_pilon:616250..616726-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6392.t1 ID=Gchil6392.t1|Name=Gchil6392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000196_pilon:616250..616726- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCACTCTTCCCGTTCTCCTTCCCCAACCGCGAGCTGCGCAGGTT
GCGCCAGCTAGCCGATCAAATGGAAAACAGCTTTAGGTCTTCTGATGGCA
CCCAGCATCACGTTCCGAACTACGAATACCACAGAGAGCAGGACAAGGTT
CACTTGGAAGTCGAGTTACCAGGTGTGCAAAAGGAACATATCGAGGTTGA
GATGCGCGGTGTCAACCTGTGCATCACCGGGCGTCGTTTCAAGTCGATTG
GACTAGTTGTCGAGGAACAGAAGGATGATGCCGCACAGAATAACACTACC
GACGTCGAAATGGGTGAAGGAAAGAACGCTAGCATGGTTTACGAATTGCA
GGTGAAGGTTGGCGAAAACGTGGACGAAGGCGCAATTAAGGCAGAGCACA
GGGATGGAATCCTCAAAATGATGATTCCGCTTAAAACCGAGACTGGCGCT
CGCAAGATTGCTATCACTCAGGGATAA
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Coding sequence (CDS) from alignment at tig00000196_pilon:616250..616726-

>Gchil6392.t1 ID=Gchil6392.t1|Name=Gchil6392.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000196_pilon:616250..616726- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCACTCTTCCCGTTCTCCTTCCCCAACCGCGAGCTGCGCAGGTT
GCGCCAGCTAGCCGATCAAATGGAAAACAGCTTTAGGTCTTCTGATGGCA
CCCAGCATCACGTTCCGAACTACGAATACCACAGAGAGCAGGACAAGGTT
CACTTGGAAGTCGAGTTACCAGGTGTGCAAAAGGAACATATCGAGGTTGA
GATGCGCGGTGTCAACCTGTGCATCACCGGGCGTCGTTTCAAGTCGATTG
GACTAGTTGTCGAGGAACAGAAGGATGATGCCGCACAGAATAACACTACC
GACGTCGAAATGGGTGAAGGAAAGAACGCTAGCATGGTTTACGAATTGCA
GGTGAAGGTTGGCGAAAACGTGGACGAAGGCGCAATTAAGGCAGAGCACA
GGGATGGAATCCTCAAAATGATGATTCCGCTTAAAACCGAGACTGGCGCT
CGCAAGATTGCTATCACTCAGGGATAA
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