Gchil6384.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6384.t1
Unique Name	Gchil6384.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000196_pilon	contig	tig00000196_pilon:509090..510877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702932.1
Preferred name	NDC80
PFAMs	Ndc80_HEC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11547
GOs	GO:0000003,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000940,GO:0000942,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007127,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008608,GO:0009987,GO:0010564,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030010,GO:0030071,GO:0031109,GO:0031262,GO:0031617,GO:0031974,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0034622,GO:0040001,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045931,GO:0046785,GO:0048285,GO:0048518,GO:0048522,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051276,GO:0051293,GO:0051294,GO:0051303,GO:0051310,GO:0051315,GO:0051316,GO:0051321,GO:0051383,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051726,GO:0051783,GO:0051983,GO:0060341,GO:0061982,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071459,GO:0071840,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090268,GO:0097435,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1902850,GO:1903046,GO:1903047,GO:1903504,GO:1903827,GO:1903829,GO:1905340,GO:1905342,GO:1905818
Evalue	8.19e-61
EggNOG OGs	COG5185@1\|root,KOG0995@2759\|Eukaryota
Description	attachment of mitotic spindle microtubules to kinetochore
COG category	D
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6384	Gchil6384	Gracilaria chilensis NLEC103_M9 male	gene	tig00000196_pilon 509090..510877 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6384.t1.stop1	Gchil6384.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000196_pilon 509090..509092 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6384.t1.CDS1	Gchil6384.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000196_pilon 509090..510877 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6384.t1.exon1	Gchil6384.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000196_pilon 509090..510877 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6384.t1.start1	Gchil6384.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000196_pilon 510875..510877 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6384.t1	Gchil6384.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000196_pilon 509090..510877 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000196_pilon:509090..510877-
coding sequence from alignment at tig00000196_pilon:509090..510877-

mRNA sequence

>Gchil6384.t1 ID=Gchil6384.t1|Name=Gchil6384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=596bp
MERSTLGALSRSKLNSRSSAGLPSRARASLTVSKPGDDRRASAFPSFGRP
RSTGGAKTRHSSLSRSSLALSRTVKRSDPRPLNDRAYMQKCAKELISFVI
ERGYEHPISPKMLTSPSSKDFQALFLFLIRRIDPTYNFIKRFEDEIPALL
RSLGYPFSMSKSALSAVGSPHTWPTLLGVLTWLVNLLKYCDAYEAAQASA
PTMDPHTRRENMFCQNTEQAYHQFLSGADTFPDLDAELEQHFSGENVNRE
REIDKLMSDREQLSTTLHALKTQPSPLRLIVEHKESLATNVKKFKLLIPS
LVEHANAVRTLLKDKEAEIDDLDAEINQLKEEKSRLTQVMNRQDQEEIDM
QQIAAERDGLKKALAKASSDRMTAEAERTDVQQLVSIAQAELIELLKAYN
KSIETLQLDEPDMKLNMCYDLQQAVLDKDVKRDLLPKLLARKEGYAAKAP
RLQEEIHVLRERGDEIEERLILLRHSLGMLEAKKSKLESEYQAKKNHNNE
LLRQRKEMVLQGGEKIAAERERLHELMRCRLKEYKDLEDQMNEYEALCKR
YKERWTVNTERCNAAFEEQLRASRTIMATVKQYFEGRRNALEEEE*

spliced messenger RNA

>Gchil6384.t1 ID=Gchil6384.t1|Name=Gchil6384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000196_pilon:509090..510877- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGTTCAACGCTCGGAGCTCTCTCTAGGAGCAAGCTCAATAGTAG
GTCCTCCGCCGGTCTCCCCTCGCGCGCGCGCGCCAGTCTCACTGTGTCAA
AGCCGGGAGACGATCGTCGCGCCTCCGCCTTCCCGTCCTTTGGCCGCCCG
CGCTCCACGGGCGGCGCCAAGACCAGGCACAGTTCGCTCTCGCGCTCCTC
GCTTGCCCTGTCCAGAACTGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCTTACATGCAGAAATGCGCAAAGGAGCTCATCTCCTTCGTCATT
GAGCGCGGCTACGAGCATCCCATCTCGCCCAAGATGCTTACCTCACCCTC
GTCAAAGGACTTCCAGGCCTTGTTTTTGTTTCTGATTCGCCGCATCGATC
CCACTTACAACTTCATCAAGCGTTTTGAAGATGAGATACCCGCGCTTTTG
CGCAGTCTTGGCTACCCCTTCTCCATGTCCAAGAGCGCCCTCAGCGCCGT
TGGCTCCCCGCACACATGGCCCACCCTGCTCGGCGTCCTCACATGGCTCG
TCAATTTGCTAAAGTACTGCGACGCGTACGAGGCCGCCCAGGCTTCTGCG
CCCACCATGGACCCTCACACGCGTCGAGAAAACATGTTTTGTCAAAACAC
CGAGCAGGCGTACCACCAGTTCCTCAGCGGGGCCGACACCTTTCCCGACC
TTGACGCAGAGCTTGAGCAACACTTTTCCGGCGAGAACGTCAATCGTGAG
AGGGAGATTGACAAGCTTATGTCCGATCGAGAGCAACTTTCTACCACCTT
GCACGCCTTGAAGACGCAGCCCTCCCCGCTGCGCCTCATTGTGGAGCACA
AGGAGTCGCTCGCCACCAATGTAAAGAAGTTCAAGCTGCTCATTCCTTCG
CTTGTGGAGCATGCAAATGCCGTGCGAACGCTGTTGAAGGACAAAGAGGC
GGAGATTGATGACTTGGACGCGGAAATCAATCAATTGAAGGAAGAAAAGT
CACGACTAACTCAAGTGATGAACCGACAGGATCAAGAGGAGATTGATATG
CAACAAATCGCTGCGGAGAGAGATGGGCTCAAAAAGGCGTTGGCTAAAGC
GTCTTCCGACCGAATGACTGCCGAAGCCGAACGCACCGACGTGCAACAAC
TCGTCTCCATTGCGCAAGCAGAGCTCATCGAGTTATTAAAGGCTTACAAC
AAATCGATCGAAACTCTGCAGCTGGATGAACCCGACATGAAGCTCAACAT
GTGCTACGATCTGCAACAGGCGGTACTGGACAAGGACGTGAAGCGCGATC
TGTTGCCAAAACTACTGGCACGAAAGGAAGGGTACGCGGCCAAGGCGCCG
AGGTTGCAAGAGGAAATTCACGTGCTGCGCGAACGAGGCGACGAGATCGA
GGAGCGTTTAATCCTGCTGCGTCACTCTTTGGGAATGCTTGAGGCGAAGA
AGAGTAAACTTGAATCGGAGTATCAGGCCAAGAAGAATCACAACAATGAG
TTGTTGAGACAGAGAAAAGAAATGGTTCTGCAGGGCGGCGAAAAGATTGC
TGCGGAACGAGAGCGGTTACATGAGTTGATGAGATGTAGATTGAAGGAGT
ACAAAGATCTGGAGGATCAGATGAATGAGTATGAAGCCTTGTGCAAGAGG
TACAAGGAACGGTGGACAGTGAATACTGAGAGGTGTAATGCGGCTTTTGA
AGAACAACTGAGAGCTAGTAGAACGATTATGGCAACGGTCAAACAGTACT
TTGAAGGTAGGCGGAATGCGTTGGAGGAGGAGGAATAG

protein sequence of Gchil6384.t1

>Gchil6384.t1 ID=Gchil6384.t1|Name=Gchil6384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=596bp
MERSTLGALSRSKLNSRSSAGLPSRARASLTVSKPGDDRRASAFPSFGRP
RSTGGAKTRHSSLSRSSLALSRTVKRSDPRPLNDRAYMQKCAKELISFVI
ERGYEHPISPKMLTSPSSKDFQALFLFLIRRIDPTYNFIKRFEDEIPALL
RSLGYPFSMSKSALSAVGSPHTWPTLLGVLTWLVNLLKYCDAYEAAQASA
PTMDPHTRRENMFCQNTEQAYHQFLSGADTFPDLDAELEQHFSGENVNRE
REIDKLMSDREQLSTTLHALKTQPSPLRLIVEHKESLATNVKKFKLLIPS
LVEHANAVRTLLKDKEAEIDDLDAEINQLKEEKSRLTQVMNRQDQEEIDM
QQIAAERDGLKKALAKASSDRMTAEAERTDVQQLVSIAQAELIELLKAYN
KSIETLQLDEPDMKLNMCYDLQQAVLDKDVKRDLLPKLLARKEGYAAKAP
RLQEEIHVLRERGDEIEERLILLRHSLGMLEAKKSKLESEYQAKKNHNNE
LLRQRKEMVLQGGEKIAAERERLHELMRCRLKEYKDLEDQMNEYEALCKR
YKERWTVNTERCNAAFEEQLRASRTIMATVKQYFEGRRNALEEEE*

mRNA from alignment at tig00000196_pilon:509090..510877-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6384.t1 ID=Gchil6384.t1|Name=Gchil6384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at tig00000196_pilon:509090..510877- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGTTCAACGCTCGGAGCTCTCTCTAGGAGCAAGCTCAATAGTAG
GTCCTCCGCCGGTCTCCCCTCGCGCGCGCGCGCCAGTCTCACTGTGTCAA
AGCCGGGAGACGATCGTCGCGCCTCCGCCTTCCCGTCCTTTGGCCGCCCG
CGCTCCACGGGCGGCGCCAAGACCAGGCACAGTTCGCTCTCGCGCTCCTC
GCTTGCCCTGTCCAGAACTGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCTTACATGCAGAAATGCGCAAAGGAGCTCATCTCCTTCGTCATT
GAGCGCGGCTACGAGCATCCCATCTCGCCCAAGATGCTTACCTCACCCTC
GTCAAAGGACTTCCAGGCCTTGTTTTTGTTTCTGATTCGCCGCATCGATC
CCACTTACAACTTCATCAAGCGTTTTGAAGATGAGATACCCGCGCTTTTG
CGCAGTCTTGGCTACCCCTTCTCCATGTCCAAGAGCGCCCTCAGCGCCGT
TGGCTCCCCGCACACATGGCCCACCCTGCTCGGCGTCCTCACATGGCTCG
TCAATTTGCTAAAGTACTGCGACGCGTACGAGGCCGCCCAGGCTTCTGCG
CCCACCATGGACCCTCACACGCGTCGAGAAAACATGTTTTGTCAAAACAC
CGAGCAGGCGTACCACCAGTTCCTCAGCGGGGCCGACACCTTTCCCGACC
TTGACGCAGAGCTTGAGCAACACTTTTCCGGCGAGAACGTCAATCGTGAG
AGGGAGATTGACAAGCTTATGTCCGATCGAGAGCAACTTTCTACCACCTT
GCACGCCTTGAAGACGCAGCCCTCCCCGCTGCGCCTCATTGTGGAGCACA
AGGAGTCGCTCGCCACCAATGTAAAGAAGTTCAAGCTGCTCATTCCTTCG
CTTGTGGAGCATGCAAATGCCGTGCGAACGCTGTTGAAGGACAAAGAGGC
GGAGATTGATGACTTGGACGCGGAAATCAATCAATTGAAGGAAGAAAAGT
CACGACTAACTCAAGTGATGAACCGACAGGATCAAGAGGAGATTGATATG
CAACAAATCGCTGCGGAGAGAGATGGGCTCAAAAAGGCGTTGGCTAAAGC
GTCTTCCGACCGAATGACTGCCGAAGCCGAACGCACCGACGTGCAACAAC
TCGTCTCCATTGCGCAAGCAGAGCTCATCGAGTTATTAAAGGCTTACAAC
AAATCGATCGAAACTCTGCAGCTGGATGAACCCGACATGAAGCTCAACAT
GTGCTACGATCTGCAACAGGCGGTACTGGACAAGGACGTGAAGCGCGATC
TGTTGCCAAAACTACTGGCACGAAAGGAAGGGTACGCGGCCAAGGCGCCG
AGGTTGCAAGAGGAAATTCACGTGCTGCGCGAACGAGGCGACGAGATCGA
GGAGCGTTTAATCCTGCTGCGTCACTCTTTGGGAATGCTTGAGGCGAAGA
AGAGTAAACTTGAATCGGAGTATCAGGCCAAGAAGAATCACAACAATGAG
TTGTTGAGACAGAGAAAAGAAATGGTTCTGCAGGGCGGCGAAAAGATTGC
TGCGGAACGAGAGCGGTTACATGAGTTGATGAGATGTAGATTGAAGGAGT
ACAAAGATCTGGAGGATCAGATGAATGAGTATGAAGCCTTGTGCAAGAGG
TACAAGGAACGGTGGACAGTGAATACTGAGAGGTGTAATGCGGCTTTTGA
AGAACAACTGAGAGCTAGTAGAACGATTATGGCAACGGTCAAACAGTACT
TTGAAGGTAGGCGGAATGCGTTGGAGGAGGAGGAATAG

Coding sequence (CDS) from alignment at tig00000196_pilon:509090..510877-

>Gchil6384.t1 ID=Gchil6384.t1|Name=Gchil6384.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1788bp|location=Sequence derived from alignment at tig00000196_pilon:509090..510877- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGTTCAACGCTCGGAGCTCTCTCTAGGAGCAAGCTCAATAGTAG
GTCCTCCGCCGGTCTCCCCTCGCGCGCGCGCGCCAGTCTCACTGTGTCAA
AGCCGGGAGACGATCGTCGCGCCTCCGCCTTCCCGTCCTTTGGCCGCCCG
CGCTCCACGGGCGGCGCCAAGACCAGGCACAGTTCGCTCTCGCGCTCCTC
GCTTGCCCTGTCCAGAACTGTCAAGCGCTCCGACCCGCGCCCCCTCAACG
ACCGCGCTTACATGCAGAAATGCGCAAAGGAGCTCATCTCCTTCGTCATT
GAGCGCGGCTACGAGCATCCCATCTCGCCCAAGATGCTTACCTCACCCTC
GTCAAAGGACTTCCAGGCCTTGTTTTTGTTTCTGATTCGCCGCATCGATC
CCACTTACAACTTCATCAAGCGTTTTGAAGATGAGATACCCGCGCTTTTG
CGCAGTCTTGGCTACCCCTTCTCCATGTCCAAGAGCGCCCTCAGCGCCGT
TGGCTCCCCGCACACATGGCCCACCCTGCTCGGCGTCCTCACATGGCTCG
TCAATTTGCTAAAGTACTGCGACGCGTACGAGGCCGCCCAGGCTTCTGCG
CCCACCATGGACCCTCACACGCGTCGAGAAAACATGTTTTGTCAAAACAC
CGAGCAGGCGTACCACCAGTTCCTCAGCGGGGCCGACACCTTTCCCGACC
TTGACGCAGAGCTTGAGCAACACTTTTCCGGCGAGAACGTCAATCGTGAG
AGGGAGATTGACAAGCTTATGTCCGATCGAGAGCAACTTTCTACCACCTT
GCACGCCTTGAAGACGCAGCCCTCCCCGCTGCGCCTCATTGTGGAGCACA
AGGAGTCGCTCGCCACCAATGTAAAGAAGTTCAAGCTGCTCATTCCTTCG
CTTGTGGAGCATGCAAATGCCGTGCGAACGCTGTTGAAGGACAAAGAGGC
GGAGATTGATGACTTGGACGCGGAAATCAATCAATTGAAGGAAGAAAAGT
CACGACTAACTCAAGTGATGAACCGACAGGATCAAGAGGAGATTGATATG
CAACAAATCGCTGCGGAGAGAGATGGGCTCAAAAAGGCGTTGGCTAAAGC
GTCTTCCGACCGAATGACTGCCGAAGCCGAACGCACCGACGTGCAACAAC
TCGTCTCCATTGCGCAAGCAGAGCTCATCGAGTTATTAAAGGCTTACAAC
AAATCGATCGAAACTCTGCAGCTGGATGAACCCGACATGAAGCTCAACAT
GTGCTACGATCTGCAACAGGCGGTACTGGACAAGGACGTGAAGCGCGATC
TGTTGCCAAAACTACTGGCACGAAAGGAAGGGTACGCGGCCAAGGCGCCG
AGGTTGCAAGAGGAAATTCACGTGCTGCGCGAACGAGGCGACGAGATCGA
GGAGCGTTTAATCCTGCTGCGTCACTCTTTGGGAATGCTTGAGGCGAAGA
AGAGTAAACTTGAATCGGAGTATCAGGCCAAGAAGAATCACAACAATGAG
TTGTTGAGACAGAGAAAAGAAATGGTTCTGCAGGGCGGCGAAAAGATTGC
TGCGGAACGAGAGCGGTTACATGAGTTGATGAGATGTAGATTGAAGGAGT
ACAAAGATCTGGAGGATCAGATGAATGAGTATGAAGCCTTGTGCAAGAGG
TACAAGGAACGGTGGACAGTGAATACTGAGAGGTGTAATGCGGCTTTTGA
AGAACAACTGAGAGCTAGTAGAACGATTATGGCAACGGTCAAACAGTACT
TTGAAGGTAGGCGGAATGCGTTGGAGGAGGAGGAATAG