Gchil6369.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6369.t1
Unique NameGchil6369.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:359806..360831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT467CT
Preferred nameSLC35C1
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K15279
KEGG TC2.A.7.16
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005342,GO:0005457,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006629,GO:0006810,GO:0006811,GO:0006820,GO:0008028,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008593,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0015075,GO:0015318,GO:0015605,GO:0015711,GO:0015714,GO:0015717,GO:0015718,GO:0015748,GO:0015780,GO:0015783,GO:0015849,GO:0015931,GO:0015932,GO:0016020,GO:0022857,GO:0023051,GO:0023057,GO:0030258,GO:0030259,GO:0031090,GO:0031984,GO:0034220,GO:0035436,GO:0036080,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045746,GO:0046942,GO:0046943,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0070085,GO:0071702,GO:0071704,GO:0071705,GO:0071917,GO:0089721,GO:0089722,GO:0090480,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903825,GO:1905039,GO:1990536
Evalue1.12e-128
EggNOG OGsKOG1442@1|root,KOG1442@2759|Eukaryota
DescriptionGDP-fucose import into Golgi lumen
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6369Gchil6369Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 359806..360831 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6369.t1.stop1Gchil6369.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 359806..359808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6369.t1.CDS1Gchil6369.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 359806..360831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6369.t1.exon1Gchil6369.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 359806..360831 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6369.t1.start1Gchil6369.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 360829..360831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6369.t1Gchil6369.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 359806..360831 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6369.t1 ID=Gchil6369.t1|Name=Gchil6369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MAKSATTAAMHAVFFAVAFYWSISITMVFVNKTLLSDPEGKLDAPLFITW
FQCVVTVLGCYVLGELGIANVPKFELKKDVLRQMLPLSFVFTMMMVCNNL
CLKFVEISFYQVARSLTIVFNVVFDFIILGQRTSFPATLCCALVVSGFLV
GNQNEMRWSLQGVLFGVAASFFVAMNAIYVKKKFPIVDNNPWKLTLYNNM
NAAIIFIPLILCFGEPQVILMSENILKLKFWLMMVTGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINVWGAASVAVILVGSLF
YTLVRRSEMKKKLAAQDAQSSKVSEDTKPLIADGEEAKETK*
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spliced messenger RNA

>Gchil6369.t1 ID=Gchil6369.t1|Name=Gchil6369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000196_pilon:359806..360831- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAAGTGCTACGACGGCTGCGATGCACGCGGTCTTTTTTGCGGT
CGCATTTTACTGGTCTATAAGTATTACAATGGTGTTTGTCAATAAAACAC
TTCTGTCGGATCCCGAAGGAAAGCTTGACGCCCCATTATTCATTACATGG
TTTCAGTGTGTAGTAACTGTTTTGGGATGCTATGTTTTGGGCGAACTCGG
TATCGCGAATGTGCCAAAATTTGAACTCAAGAAGGATGTGCTGAGGCAGA
TGCTTCCGCTGTCATTCGTCTTTACCATGATGATGGTGTGCAACAACCTT
TGCCTTAAATTCGTTGAGATTTCATTCTATCAGGTTGCTCGTTCTCTCAC
CATTGTTTTCAATGTCGTCTTCGACTTCATCATCTTGGGTCAGCGTACTT
CGTTCCCGGCGACACTTTGTTGTGCACTGGTTGTATCAGGATTTCTTGTC
GGCAATCAAAACGAAATGCGATGGTCCTTGCAAGGAGTACTCTTTGGTGT
AGCGGCTAGTTTTTTCGTGGCCATGAATGCTATCTATGTCAAGAAGAAAT
TCCCAATTGTCGATAATAATCCATGGAAACTCACGCTCTACAACAACATG
AATGCCGCTATCATCTTCATTCCTCTAATTCTCTGTTTCGGTGAACCGCA
AGTAATCCTCATGTCAGAAAACATCCTCAAACTCAAGTTCTGGCTCATGA
TGGTCACCGGTGGCGTTTTTGGCATTTGCATATCTTTTGCTGTTGCCGCC
CAAATCAAGTATACTTCTCCTCTTACCCACAATGTGTCTGCAACCGCGAA
GGCTGCAGCGCAAACTGTTTTGGGACTCATAGTCTACAGGAATCCAATTA
ATGTGTGGGGCGCTGCAAGCGTCGCAGTGATCTTGGTGGGTTCATTGTTT
TACACACTAGTTCGAAGATCAGAAATGAAGAAGAAATTGGCAGCACAGGA
TGCTCAATCCTCTAAAGTTTCTGAGGATACCAAGCCCCTGATTGCAGATG
GGGAGGAAGCTAAAGAAACAAAATAG
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protein sequence of Gchil6369.t1

>Gchil6369.t1 ID=Gchil6369.t1|Name=Gchil6369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MAKSATTAAMHAVFFAVAFYWSISITMVFVNKTLLSDPEGKLDAPLFITW
FQCVVTVLGCYVLGELGIANVPKFELKKDVLRQMLPLSFVFTMMMVCNNL
CLKFVEISFYQVARSLTIVFNVVFDFIILGQRTSFPATLCCALVVSGFLV
GNQNEMRWSLQGVLFGVAASFFVAMNAIYVKKKFPIVDNNPWKLTLYNNM
NAAIIFIPLILCFGEPQVILMSENILKLKFWLMMVTGGVFGICISFAVAA
QIKYTSPLTHNVSATAKAAAQTVLGLIVYRNPINVWGAASVAVILVGSLF
YTLVRRSEMKKKLAAQDAQSSKVSEDTKPLIADGEEAKETK*
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mRNA from alignment at tig00000196_pilon:359806..360831-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6369.t1 ID=Gchil6369.t1|Name=Gchil6369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000196_pilon:359806..360831- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAAAGTGCTACGACGGCTGCGATGCACGCGGTCTTTTTTGCGGT
CGCATTTTACTGGTCTATAAGTATTACAATGGTGTTTGTCAATAAAACAC
TTCTGTCGGATCCCGAAGGAAAGCTTGACGCCCCATTATTCATTACATGG
TTTCAGTGTGTAGTAACTGTTTTGGGATGCTATGTTTTGGGCGAACTCGG
TATCGCGAATGTGCCAAAATTTGAACTCAAGAAGGATGTGCTGAGGCAGA
TGCTTCCGCTGTCATTCGTCTTTACCATGATGATGGTGTGCAACAACCTT
TGCCTTAAATTCGTTGAGATTTCATTCTATCAGGTTGCTCGTTCTCTCAC
CATTGTTTTCAATGTCGTCTTCGACTTCATCATCTTGGGTCAGCGTACTT
CGTTCCCGGCGACACTTTGTTGTGCACTGGTTGTATCAGGATTTCTTGTC
GGCAATCAAAACGAAATGCGATGGTCCTTGCAAGGAGTACTCTTTGGTGT
AGCGGCTAGTTTTTTCGTGGCCATGAATGCTATCTATGTCAAGAAGAAAT
TCCCAATTGTCGATAATAATCCATGGAAACTCACGCTCTACAACAACATG
AATGCCGCTATCATCTTCATTCCTCTAATTCTCTGTTTCGGTGAACCGCA
AGTAATCCTCATGTCAGAAAACATCCTCAAACTCAAGTTCTGGCTCATGA
TGGTCACCGGTGGCGTTTTTGGCATTTGCATATCTTTTGCTGTTGCCGCC
CAAATCAAGTATACTTCTCCTCTTACCCACAATGTGTCTGCAACCGCGAA
GGCTGCAGCGCAAACTGTTTTGGGACTCATAGTCTACAGGAATCCAATTA
ATGTGTGGGGCGCTGCAAGCGTCGCAGTGATCTTGGTGGGTTCATTGTTT
TACACACTAGTTCGAAGATCAGAAATGAAGAAGAAATTGGCAGCACAGGA
TGCTCAATCCTCTAAAGTTTCTGAGGATACCAAGCCCCTGATTGCAGATG
GGGAGGAAGCTAAAGAAACAAAATAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:359806..360831-

>Gchil6369.t1 ID=Gchil6369.t1|Name=Gchil6369.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000196_pilon:359806..360831- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGAAAAGTGCTACGACGGCTGCGATGCACGCGGTCTTTTTTGCGGT
CGCATTTTACTGGTCTATAAGTATTACAATGGTGTTTGTCAATAAAACAC
TTCTGTCGGATCCCGAAGGAAAGCTTGACGCCCCATTATTCATTACATGG
TTTCAGTGTGTAGTAACTGTTTTGGGATGCTATGTTTTGGGCGAACTCGG
TATCGCGAATGTGCCAAAATTTGAACTCAAGAAGGATGTGCTGAGGCAGA
TGCTTCCGCTGTCATTCGTCTTTACCATGATGATGGTGTGCAACAACCTT
TGCCTTAAATTCGTTGAGATTTCATTCTATCAGGTTGCTCGTTCTCTCAC
CATTGTTTTCAATGTCGTCTTCGACTTCATCATCTTGGGTCAGCGTACTT
CGTTCCCGGCGACACTTTGTTGTGCACTGGTTGTATCAGGATTTCTTGTC
GGCAATCAAAACGAAATGCGATGGTCCTTGCAAGGAGTACTCTTTGGTGT
AGCGGCTAGTTTTTTCGTGGCCATGAATGCTATCTATGTCAAGAAGAAAT
TCCCAATTGTCGATAATAATCCATGGAAACTCACGCTCTACAACAACATG
AATGCCGCTATCATCTTCATTCCTCTAATTCTCTGTTTCGGTGAACCGCA
AGTAATCCTCATGTCAGAAAACATCCTCAAACTCAAGTTCTGGCTCATGA
TGGTCACCGGTGGCGTTTTTGGCATTTGCATATCTTTTGCTGTTGCCGCC
CAAATCAAGTATACTTCTCCTCTTACCCACAATGTGTCTGCAACCGCGAA
GGCTGCAGCGCAAACTGTTTTGGGACTCATAGTCTACAGGAATCCAATTA
ATGTGTGGGGCGCTGCAAGCGTCGCAGTGATCTTGGTGGGTTCATTGTTT
TACACACTAGTTCGAAGATCAGAAATGAAGAAGAAATTGGCAGCACAGGA
TGCTCAATCCTCTAAAGTTTCTGAGGATACCAAGCCCCTGATTGCAGATG
GGGAGGAAGCTAAAGAAACAAAATAG
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