Gchil635.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil635.t1
Unique NameGchil635.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:704640..706418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil635Gchil635Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 704640..706418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil635.t1.start1Gchil635.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 704640..704642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil635.t1.CDS1Gchil635.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 704640..706418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil635.t1.exon1Gchil635.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 704640..706418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil635.t1.stop1Gchil635.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 706416..706418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil635.t1Gchil635.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 704640..706418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil635.t1 ID=Gchil635.t1|Name=Gchil635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=593bp
MTSFTPAACPTDPEVAQLLALVPTSRTPSPPLNEALAELIAACRFPTAFD
FLINPDADPLSVLTAPLNRHNAVASHVSISALSPPTPHSGPTDTPVDSFF
VGNYAFIPAFSIADIQLGFGIRECKTHVNGRPIEHPCSLTSRTNVFRFIR
NDSAHVLIIVQDLDEPLVKIEYMRLVTGCMRRRNFFVITRSGLIALHRSH
SPFEPSQLAPHVLVFRTSIERRQCPICGNQPSSAPCFCVIDVPKSRHALD
FSIMNPGMCAHLGSYEGSAVVMFSLQGLNMPASTVANRMIISEVDEELDL
IDRLSRCVITEQLSKSPGNPLKDMLLRPIQISLNPSQPEYASNTDGSSSS
TNSVRSLSVSNPSPALPLTLEQASALLSFYCDPKTGASSIGSDPTEELNV
SMSNPGQLDIPPQKLSQMLPSANSPFLASDEAGDNHSWMSPQFGNTPEAP
VAHPIISEALQFPSTVPMDEELALTNLITPQDLSTYMQENALVISNGMPQ
SRPQPVPIAPSSQLAAPETPETKTQEERERRAELRRQRNREAAHRSNVKR
KVKNDALKADLKKWNGKVKQLRRVEVGLREENLKLRKLLSEG*
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spliced messenger RNA

>Gchil635.t1 ID=Gchil635.t1|Name=Gchil635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00004380_pilon:704640..706418+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTTTCACGCCCGCCGCATGTCCAACAGACCCCGAGGTTGCCCA
GCTTCTCGCCCTTGTCCCCACCTCCCGCACCCCATCACCCCCTCTTAACG
AGGCGCTCGCCGAGCTTATCGCCGCATGCCGCTTCCCCACCGCCTTCGAC
TTCCTCATCAACCCCGACGCCGACCCGCTTTCCGTTCTCACCGCCCCCCT
CAACCGCCACAATGCCGTCGCCAGCCATGTCTCCATCTCCGCGCTTTCGC
CCCCCACCCCCCACAGCGGCCCCACAGACACGCCTGTTGACTCCTTCTTC
GTTGGAAACTACGCCTTCATCCCTGCGTTCAGCATCGCCGACATTCAACT
TGGCTTTGGCATTCGCGAATGCAAAACCCATGTCAATGGCCGTCCCATCG
AACACCCGTGCTCGCTCACCTCCCGCACTAACGTATTTCGTTTCATTCGC
AACGACAGTGCACATGTGCTCATTATAGTTCAGGACTTGGACGAGCCGCT
CGTCAAAATTGAATATATGCGTCTTGTTACCGGCTGCATGCGTCGCCGCA
ATTTCTTTGTAATCACCAGATCCGGCCTGATTGCTTTGCATCGATCGCAC
TCCCCCTTCGAGCCATCACAACTTGCGCCCCATGTCCTCGTCTTTCGCAC
CAGCATCGAGCGTCGCCAGTGTCCCATTTGCGGAAACCAGCCCTCCTCCG
CGCCATGTTTCTGCGTCATCGACGTGCCCAAATCTCGTCATGCCCTTGAC
TTCAGCATTATGAACCCGGGCATGTGCGCTCATCTCGGCAGTTATGAGGG
CTCGGCGGTGGTCATGTTCAGTCTTCAAGGCCTAAACATGCCTGCTTCCA
CTGTTGCCAACAGAATGATTATTTCGGAGGTCGACGAAGAACTAGACCTT
ATAGACCGTCTCAGTCGCTGTGTTATTACAGAACAACTCTCCAAGTCACC
TGGGAATCCGCTCAAGGACATGCTCCTACGCCCAATCCAAATATCCCTTA
ACCCTTCGCAACCTGAATATGCTTCAAACACTGATGGTTCGAGCTCTAGT
ACCAACTCTGTACGATCTCTTTCTGTTTCAAATCCCAGTCCTGCCCTGCC
CTTGACTTTAGAGCAAGCGTCTGCTTTGCTAAGCTTTTATTGTGACCCGA
AAACTGGCGCGTCGAGCATAGGTAGCGATCCAACCGAGGAATTGAATGTT
TCTATGTCAAACCCAGGCCAATTGGACATTCCACCACAAAAGCTTTCGCA
AATGCTGCCTTCTGCGAATTCCCCGTTTCTTGCGTCCGACGAAGCAGGAG
ACAATCATTCATGGATGTCTCCCCAGTTTGGCAACACCCCTGAAGCGCCT
GTGGCGCATCCCATCATTAGTGAAGCACTGCAATTTCCCTCGACGGTGCC
TATGGATGAAGAGCTGGCTCTCACGAATCTCATCACTCCACAAGACCTGT
CCACTTACATGCAGGAAAATGCCTTAGTAATAAGCAACGGCATGCCACAA
TCTAGACCACAGCCTGTTCCAATTGCCCCTTCTAGCCAGCTTGCAGCCCC
TGAAACCCCCGAAACAAAGACACAAGAAGAAAGAGAACGTAGAGCCGAGC
TAAGACGTCAGCGAAATCGTGAGGCAGCACACAGAAGTAATGTAAAACGA
AAAGTCAAGAATGACGCTCTAAAGGCAGACTTGAAAAAGTGGAACGGCAA
AGTAAAACAACTACGCAGAGTGGAAGTGGGACTTCGGGAAGAGAATTTGA
AATTAAGAAAACTGCTATCTGAAGGTTGA
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protein sequence of Gchil635.t1

>Gchil635.t1 ID=Gchil635.t1|Name=Gchil635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=593bp
MTSFTPAACPTDPEVAQLLALVPTSRTPSPPLNEALAELIAACRFPTAFD
FLINPDADPLSVLTAPLNRHNAVASHVSISALSPPTPHSGPTDTPVDSFF
VGNYAFIPAFSIADIQLGFGIRECKTHVNGRPIEHPCSLTSRTNVFRFIR
NDSAHVLIIVQDLDEPLVKIEYMRLVTGCMRRRNFFVITRSGLIALHRSH
SPFEPSQLAPHVLVFRTSIERRQCPICGNQPSSAPCFCVIDVPKSRHALD
FSIMNPGMCAHLGSYEGSAVVMFSLQGLNMPASTVANRMIISEVDEELDL
IDRLSRCVITEQLSKSPGNPLKDMLLRPIQISLNPSQPEYASNTDGSSSS
TNSVRSLSVSNPSPALPLTLEQASALLSFYCDPKTGASSIGSDPTEELNV
SMSNPGQLDIPPQKLSQMLPSANSPFLASDEAGDNHSWMSPQFGNTPEAP
VAHPIISEALQFPSTVPMDEELALTNLITPQDLSTYMQENALVISNGMPQ
SRPQPVPIAPSSQLAAPETPETKTQEERERRAELRRQRNREAAHRSNVKR
KVKNDALKADLKKWNGKVKQLRRVEVGLREENLKLRKLLSEG*
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mRNA from alignment at tig00004380_pilon:704640..706418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil635.t1 ID=Gchil635.t1|Name=Gchil635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at tig00004380_pilon:704640..706418+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTTTCACGCCCGCCGCATGTCCAACAGACCCCGAGGTTGCCCA
GCTTCTCGCCCTTGTCCCCACCTCCCGCACCCCATCACCCCCTCTTAACG
AGGCGCTCGCCGAGCTTATCGCCGCATGCCGCTTCCCCACCGCCTTCGAC
TTCCTCATCAACCCCGACGCCGACCCGCTTTCCGTTCTCACCGCCCCCCT
CAACCGCCACAATGCCGTCGCCAGCCATGTCTCCATCTCCGCGCTTTCGC
CCCCCACCCCCCACAGCGGCCCCACAGACACGCCTGTTGACTCCTTCTTC
GTTGGAAACTACGCCTTCATCCCTGCGTTCAGCATCGCCGACATTCAACT
TGGCTTTGGCATTCGCGAATGCAAAACCCATGTCAATGGCCGTCCCATCG
AACACCCGTGCTCGCTCACCTCCCGCACTAACGTATTTCGTTTCATTCGC
AACGACAGTGCACATGTGCTCATTATAGTTCAGGACTTGGACGAGCCGCT
CGTCAAAATTGAATATATGCGTCTTGTTACCGGCTGCATGCGTCGCCGCA
ATTTCTTTGTAATCACCAGATCCGGCCTGATTGCTTTGCATCGATCGCAC
TCCCCCTTCGAGCCATCACAACTTGCGCCCCATGTCCTCGTCTTTCGCAC
CAGCATCGAGCGTCGCCAGTGTCCCATTTGCGGAAACCAGCCCTCCTCCG
CGCCATGTTTCTGCGTCATCGACGTGCCCAAATCTCGTCATGCCCTTGAC
TTCAGCATTATGAACCCGGGCATGTGCGCTCATCTCGGCAGTTATGAGGG
CTCGGCGGTGGTCATGTTCAGTCTTCAAGGCCTAAACATGCCTGCTTCCA
CTGTTGCCAACAGAATGATTATTTCGGAGGTCGACGAAGAACTAGACCTT
ATAGACCGTCTCAGTCGCTGTGTTATTACAGAACAACTCTCCAAGTCACC
TGGGAATCCGCTCAAGGACATGCTCCTACGCCCAATCCAAATATCCCTTA
ACCCTTCGCAACCTGAATATGCTTCAAACACTGATGGTTCGAGCTCTAGT
ACCAACTCTGTACGATCTCTTTCTGTTTCAAATCCCAGTCCTGCCCTGCC
CTTGACTTTAGAGCAAGCGTCTGCTTTGCTAAGCTTTTATTGTGACCCGA
AAACTGGCGCGTCGAGCATAGGTAGCGATCCAACCGAGGAATTGAATGTT
TCTATGTCAAACCCAGGCCAATTGGACATTCCACCACAAAAGCTTTCGCA
AATGCTGCCTTCTGCGAATTCCCCGTTTCTTGCGTCCGACGAAGCAGGAG
ACAATCATTCATGGATGTCTCCCCAGTTTGGCAACACCCCTGAAGCGCCT
GTGGCGCATCCCATCATTAGTGAAGCACTGCAATTTCCCTCGACGGTGCC
TATGGATGAAGAGCTGGCTCTCACGAATCTCATCACTCCACAAGACCTGT
CCACTTACATGCAGGAAAATGCCTTAGTAATAAGCAACGGCATGCCACAA
TCTAGACCACAGCCTGTTCCAATTGCCCCTTCTAGCCAGCTTGCAGCCCC
TGAAACCCCCGAAACAAAGACACAAGAAGAAAGAGAACGTAGAGCCGAGC
TAAGACGTCAGCGAAATCGTGAGGCAGCACACAGAAGTAATGTAAAACGA
AAAGTCAAGAATGACGCTCTAAAGGCAGACTTGAAAAAGTGGAACGGCAA
AGTAAAACAACTACGCAGAGTGGAAGTGGGACTTCGGGAAGAGAATTTGA
AATTAAGAAAACTGCTATCTGAAGGTTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:704640..706418+

>Gchil635.t1 ID=Gchil635.t1|Name=Gchil635.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1779bp|location=Sequence derived from alignment at tig00004380_pilon:704640..706418+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCTCTTTCACGCCCGCCGCATGTCCAACAGACCCCGAGGTTGCCCA
GCTTCTCGCCCTTGTCCCCACCTCCCGCACCCCATCACCCCCTCTTAACG
AGGCGCTCGCCGAGCTTATCGCCGCATGCCGCTTCCCCACCGCCTTCGAC
TTCCTCATCAACCCCGACGCCGACCCGCTTTCCGTTCTCACCGCCCCCCT
CAACCGCCACAATGCCGTCGCCAGCCATGTCTCCATCTCCGCGCTTTCGC
CCCCCACCCCCCACAGCGGCCCCACAGACACGCCTGTTGACTCCTTCTTC
GTTGGAAACTACGCCTTCATCCCTGCGTTCAGCATCGCCGACATTCAACT
TGGCTTTGGCATTCGCGAATGCAAAACCCATGTCAATGGCCGTCCCATCG
AACACCCGTGCTCGCTCACCTCCCGCACTAACGTATTTCGTTTCATTCGC
AACGACAGTGCACATGTGCTCATTATAGTTCAGGACTTGGACGAGCCGCT
CGTCAAAATTGAATATATGCGTCTTGTTACCGGCTGCATGCGTCGCCGCA
ATTTCTTTGTAATCACCAGATCCGGCCTGATTGCTTTGCATCGATCGCAC
TCCCCCTTCGAGCCATCACAACTTGCGCCCCATGTCCTCGTCTTTCGCAC
CAGCATCGAGCGTCGCCAGTGTCCCATTTGCGGAAACCAGCCCTCCTCCG
CGCCATGTTTCTGCGTCATCGACGTGCCCAAATCTCGTCATGCCCTTGAC
TTCAGCATTATGAACCCGGGCATGTGCGCTCATCTCGGCAGTTATGAGGG
CTCGGCGGTGGTCATGTTCAGTCTTCAAGGCCTAAACATGCCTGCTTCCA
CTGTTGCCAACAGAATGATTATTTCGGAGGTCGACGAAGAACTAGACCTT
ATAGACCGTCTCAGTCGCTGTGTTATTACAGAACAACTCTCCAAGTCACC
TGGGAATCCGCTCAAGGACATGCTCCTACGCCCAATCCAAATATCCCTTA
ACCCTTCGCAACCTGAATATGCTTCAAACACTGATGGTTCGAGCTCTAGT
ACCAACTCTGTACGATCTCTTTCTGTTTCAAATCCCAGTCCTGCCCTGCC
CTTGACTTTAGAGCAAGCGTCTGCTTTGCTAAGCTTTTATTGTGACCCGA
AAACTGGCGCGTCGAGCATAGGTAGCGATCCAACCGAGGAATTGAATGTT
TCTATGTCAAACCCAGGCCAATTGGACATTCCACCACAAAAGCTTTCGCA
AATGCTGCCTTCTGCGAATTCCCCGTTTCTTGCGTCCGACGAAGCAGGAG
ACAATCATTCATGGATGTCTCCCCAGTTTGGCAACACCCCTGAAGCGCCT
GTGGCGCATCCCATCATTAGTGAAGCACTGCAATTTCCCTCGACGGTGCC
TATGGATGAAGAGCTGGCTCTCACGAATCTCATCACTCCACAAGACCTGT
CCACTTACATGCAGGAAAATGCCTTAGTAATAAGCAACGGCATGCCACAA
TCTAGACCACAGCCTGTTCCAATTGCCCCTTCTAGCCAGCTTGCAGCCCC
TGAAACCCCCGAAACAAAGACACAAGAAGAAAGAGAACGTAGAGCCGAGC
TAAGACGTCAGCGAAATCGTGAGGCAGCACACAGAAGTAATGTAAAACGA
AAAGTCAAGAATGACGCTCTAAAGGCAGACTTGAAAAAGTGGAACGGCAA
AGTAAAACAACTACGCAGAGTGGAAGTGGGACTTCGGGAAGAGAATTTGA
AATTAAGAAAACTGCTATCTGAAGGTTGA
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