Gchil6326.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6326.t1
Unique NameGchil6326.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:122061..123675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G1I4
Preferred nameFLOT2
PFAMsBand_7,Flot
Max annot lvl2759|Eukaryota
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Evalue2e-48
EggNOG OGsCOG2268@1|root,KOG2668@2759|Eukaryota
Descriptionprotein localization to membrane raft
COG categoryU
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6326Gchil6326Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 122061..123675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1Gchil6326.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 122061..123675 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1.stop1Gchil6326.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 122061..122063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1.CDS1Gchil6326.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 122061..122328 -
Gchil6326.t1.CDS2Gchil6326.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 122414..123675 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1.exon1Gchil6326.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 122061..122328 -
Gchil6326.t1.exon2Gchil6326.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 122414..123675 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1.intron1Gchil6326.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000196_pilon 122329..122413 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6326.t1.start1Gchil6326.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 123673..123675 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6326.t1 ID=Gchil6326.t1|Name=Gchil6326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp
MPSFFNAFVHTAGPNTALIKSSGGKKVTVYVGGRVLAVPFMQRIDRLGLE
LRTITVHTKHGTDINGVSVNVTSCCQVKIQGWTATVDGDEELAPHFTRVT
EDLVTDESAIRLAAQHFIGKKDSEIEDSIQKTVAGHQRSIIGALTVEELY
RDRATFSKRVLELCHSDMRNMGLTIVSYTVADINDDNGYIEALGVSPTES
VKRGAVEGRAMHQSAAAAKKTEEETRAEVKINEQEQIKIVSDQETKIKKA
QAQQEIDKHIAAQNKAFDIADAEQDKLLLVKKKEAMAAEAKAELLVMKQY
VEKERLLKEQVVHVEADAKLYKAKVDADGIRVSAAAEAEKIELLGKAEAE
KQSVILEKVGIARAEVEAEKIKRAGDATADVIRAKGAAEVEVELKRAEAL
RAKGMAENDVLERKLQIWQKHANYGVLLEKMIDMMPRVAGSLAEPLSKTE
KMVFVSGGSNSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKVANSLTG*
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spliced messenger RNA

>Gchil6326.t1 ID=Gchil6326.t1|Name=Gchil6326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000196_pilon:122061..123675- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCGTTTTTCAATGCCTTCGTGCATACAGCCGGGCCGAACACTGC
CCTCATCAAGTCCTCTGGAGGGAAAAAAGTCACCGTCTACGTTGGCGGTC
GCGTGTTGGCAGTCCCCTTTATGCAGCGCATCGATAGATTAGGTCTAGAG
CTGCGCACCATCACCGTGCACACCAAACACGGAACAGATATCAACGGCGT
CTCTGTCAACGTCACATCATGTTGTCAGGTCAAGATACAGGGTTGGACTG
CCACTGTCGATGGTGACGAGGAGCTTGCCCCGCATTTCACTCGTGTTACG
GAGGACCTTGTCACAGATGAATCCGCAATCAGACTTGCTGCACAGCATTT
CATCGGTAAGAAGGATTCGGAAATCGAAGATTCCATCCAGAAGACTGTTG
CAGGACATCAGCGTTCTATTATCGGTGCTCTCACTGTGGAAGAGCTCTAT
CGGGATCGTGCCACATTTTCGAAACGTGTTCTCGAGCTCTGCCACAGTGA
CATGAGAAATATGGGCCTCACCATTGTGTCGTATACCGTTGCCGACATTA
ACGATGATAATGGATACATTGAAGCTTTAGGAGTTTCTCCTACTGAAAGC
GTGAAGAGAGGGGCCGTTGAGGGACGTGCAATGCATCAAAGTGCGGCTGC
TGCAAAGAAAACAGAGGAGGAGACACGCGCAGAAGTCAAGATAAACGAAC
AAGAACAGATCAAAATCGTTTCGGACCAAGAAACCAAGATAAAGAAAGCC
CAGGCTCAGCAGGAAATTGATAAGCACATTGCCGCACAAAACAAGGCGTT
CGATATCGCAGACGCGGAACAAGACAAGCTCTTGCTGGTGAAAAAAAAGG
AAGCCATGGCCGCCGAGGCAAAAGCTGAGTTATTGGTGATGAAGCAATAT
GTGGAAAAAGAGCGATTGTTGAAAGAACAGGTCGTTCATGTGGAAGCTGA
TGCCAAACTGTACAAAGCCAAAGTGGACGCAGATGGCATTCGCGTCAGTG
CTGCAGCTGAAGCAGAGAAGATTGAACTACTTGGAAAAGCAGAGGCGGAG
AAACAAAGTGTGATTCTAGAGAAAGTGGGCATTGCCAGAGCTGAAGTTGA
AGCTGAGAAAATCAAACGAGCTGGTGATGCCACTGCTGATGTAATTCGTG
CAAAAGGTGCTGCAGAGGTTGAGGTGGAGCTCAAGAGAGCTGAAGCTCTT
CGAGCCAAGGGAATGGCTGAAAATGATGTGCTGGAAAGAAAACTTCAAAT
ATGGCAAAAACATGCGAATTACGGCGTGCTTCTGGAGAAGATGATCGATA
TGATGCCCCGTGTGGCTGGCTCCTTGGCGGAGCCGCTTTCAAAGACGGAG
AAGATGGTGTTCGTCAGTGGTGGCAGCAACAGTGGGAGTGGACCTTCTCA
GTTTACCCGCGAGATGACTCGAATGGTGGCCGAGGTTCCGGAAGCTATTC
AGGCTCTGACCAATTGTGACATTCGCCAAGGCTTAGCGAATCTGGCAAAT
GGAAAGGTAGCGAACTCGTTGACTGGGTAG
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protein sequence of Gchil6326.t1

>Gchil6326.t1 ID=Gchil6326.t1|Name=Gchil6326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=510bp
MPSFFNAFVHTAGPNTALIKSSGGKKVTVYVGGRVLAVPFMQRIDRLGLE
LRTITVHTKHGTDINGVSVNVTSCCQVKIQGWTATVDGDEELAPHFTRVT
EDLVTDESAIRLAAQHFIGKKDSEIEDSIQKTVAGHQRSIIGALTVEELY
RDRATFSKRVLELCHSDMRNMGLTIVSYTVADINDDNGYIEALGVSPTES
VKRGAVEGRAMHQSAAAAKKTEEETRAEVKINEQEQIKIVSDQETKIKKA
QAQQEIDKHIAAQNKAFDIADAEQDKLLLVKKKEAMAAEAKAELLVMKQY
VEKERLLKEQVVHVEADAKLYKAKVDADGIRVSAAAEAEKIELLGKAEAE
KQSVILEKVGIARAEVEAEKIKRAGDATADVIRAKGAAEVEVELKRAEAL
RAKGMAENDVLERKLQIWQKHANYGVLLEKMIDMMPRVAGSLAEPLSKTE
KMVFVSGGSNSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKVANSLTG*
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mRNA from alignment at tig00000196_pilon:122061..123675-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6326.t1 ID=Gchil6326.t1|Name=Gchil6326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1615bp|location=Sequence derived from alignment at tig00000196_pilon:122061..123675- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCGTTTTTCAATGCCTTCGTGCATACAGCCGGGCCGAACACTGC
CCTCATCAAGTCCTCTGGAGGGAAAAAAGTCACCGTCTACGTTGGCGGTC
GCGTGTTGGCAGTCCCCTTTATGCAGCGCATCGATAGATTAGGTCTAGAG
CTGCGCACCATCACCGTGCACACCAAACACGGAACAGATATCAACGGCGT
CTCTGTCAACGTCACATCATGTTGTCAGGTCAAGATACAGGGTTGGACTG
CCACTGTCGATGGTGACGAGGAGCTTGCCCCGCATTTCACTCGTGTTACG
GAGGACCTTGTCACAGATGAATCCGCAATCAGACTTGCTGCACAGCATTT
CATCGGTAAGAAGGATTCGGAAATCGAAGATTCCATCCAGAAGACTGTTG
CAGGACATCAGCGTTCTATTATCGGTGCTCTCACTGTGGAAGAGCTCTAT
CGGGATCGTGCCACATTTTCGAAACGTGTTCTCGAGCTCTGCCACAGTGA
CATGAGAAATATGGGCCTCACCATTGTGTCGTATACCGTTGCCGACATTA
ACGATGATAATGGATACATTGAAGCTTTAGGAGTTTCTCCTACTGAAAGC
GTGAAGAGAGGGGCCGTTGAGGGACGTGCAATGCATCAAAGTGCGGCTGC
TGCAAAGAAAACAGAGGAGGAGACACGCGCAGAAGTCAAGATAAACGAAC
AAGAACAGATCAAAATCGTTTCGGACCAAGAAACCAAGATAAAGAAAGCC
CAGGCTCAGCAGGAAATTGATAAGCACATTGCCGCACAAAACAAGGCGTT
CGATATCGCAGACGCGGAACAAGACAAGCTCTTGCTGGTGAAAAAAAAGG
AAGCCATGGCCGCCGAGGCAAAAGCTGAGTTATTGGTGATGAAGCAATAT
GTGGAAAAAGAGCGATTGTTGAAAGAACAGGTCGTTCATGTGGAAGCTGA
TGCCAAACTGTACAAAGCCAAAGTGGACGCAGATGGCATTCGCGTCAGTG
CTGCAGCTGAAGCAGAGAAGATTGAACTACTTGGAAAAGCAGAGGCGGAG
AAACAAAGTGTGATTCTAGAGAAAGTGGGCATTGCCAGAGCTGAAGTTGA
AGCTGAGAAAATCAAACGAGCTGGTGATGCCACTGCTGATGTAATTCGTG
CAAAAGGTGCTGCAGAGGTTGAGGTGGAGCTCAAGAGAGCTGAAGCTCTT
CGAGCCAAGGGAATGGCTGAAAATGATGTGCTGGAAAGAAAACTTCAAAT
ATGGCAAAAACAGTACGTATTTTTGTCAATTGTCTACAACGGTCCAGTGT
GTAAGATTACTAACGGCTTTCTGATTTCTATTTCCCATGTTGCTTAGTGC
GAATTACGGCGTGCTTCTGGAGAAGATGATCGATATGATGCCCCGTGTGG
CTGGCTCCTTGGCGGAGCCGCTTTCAAAGACGGAGAAGATGGTGTTCGTC
AGTGGTGGCAGCAACAGTGGGAGTGGACCTTCTCAGTTTACCCGCGAGAT
GACTCGAATGGTGGCCGAGGTTCCGGAAGCTATTCAGGCTCTGACCAATT
GTGACATTCGCCAAGGCTTAGCGAATCTGGCAAATGGAAAGGTAGCGAAC
TCGTTGACTGGGTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:122061..123675-

>Gchil6326.t1 ID=Gchil6326.t1|Name=Gchil6326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000196_pilon:122061..123675- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCGTTTTTCAATGCCTTCGTGCATACAGCCGGGCCGAACACTGC
CCTCATCAAGTCCTCTGGAGGGAAAAAAGTCACCGTCTACGTTGGCGGTC
GCGTGTTGGCAGTCCCCTTTATGCAGCGCATCGATAGATTAGGTCTAGAG
CTGCGCACCATCACCGTGCACACCAAACACGGAACAGATATCAACGGCGT
CTCTGTCAACGTCACATCATGTTGTCAGGTCAAGATACAGGGTTGGACTG
CCACTGTCGATGGTGACGAGGAGCTTGCCCCGCATTTCACTCGTGTTACG
GAGGACCTTGTCACAGATGAATCCGCAATCAGACTTGCTGCACAGCATTT
CATCGGTAAGAAGGATTCGGAAATCGAAGATTCCATCCAGAAGACTGTTG
CAGGACATCAGCGTTCTATTATCGGTGCTCTCACTGTGGAAGAGCTCTAT
CGGGATCGTGCCACATTTTCGAAACGTGTTCTCGAGCTCTGCCACAGTGA
CATGAGAAATATGGGCCTCACCATTGTGTCGTATACCGTTGCCGACATTA
ACGATGATAATGGATACATTGAAGCTTTAGGAGTTTCTCCTACTGAAAGC
GTGAAGAGAGGGGCCGTTGAGGGACGTGCAATGCATCAAAGTGCGGCTGC
TGCAAAGAAAACAGAGGAGGAGACACGCGCAGAAGTCAAGATAAACGAAC
AAGAACAGATCAAAATCGTTTCGGACCAAGAAACCAAGATAAAGAAAGCC
CAGGCTCAGCAGGAAATTGATAAGCACATTGCCGCACAAAACAAGGCGTT
CGATATCGCAGACGCGGAACAAGACAAGCTCTTGCTGGTGAAAAAAAAGG
AAGCCATGGCCGCCGAGGCAAAAGCTGAGTTATTGGTGATGAAGCAATAT
GTGGAAAAAGAGCGATTGTTGAAAGAACAGGTCGTTCATGTGGAAGCTGA
TGCCAAACTGTACAAAGCCAAAGTGGACGCAGATGGCATTCGCGTCAGTG
CTGCAGCTGAAGCAGAGAAGATTGAACTACTTGGAAAAGCAGAGGCGGAG
AAACAAAGTGTGATTCTAGAGAAAGTGGGCATTGCCAGAGCTGAAGTTGA
AGCTGAGAAAATCAAACGAGCTGGTGATGCCACTGCTGATGTAATTCGTG
CAAAAGGTGCTGCAGAGGTTGAGGTGGAGCTCAAGAGAGCTGAAGCTCTT
CGAGCCAAGGGAATGGCTGAAAATGATGTGCTGGAAAGAAAACTTCAAAT
ATGGCAAAAACATGCGAATTACGGCGTGCTTCTGGAGAAGATGATCGATA
TGATGCCCCGTGTGGCTGGCTCCTTGGCGGAGCCGCTTTCAAAGACGGAG
AAGATGGTGTTCGTCAGTGGTGGCAGCAACAGTGGGAGTGGACCTTCTCA
GTTTACCCGCGAGATGACTCGAATGGTGGCCGAGGTTCCGGAAGCTATTC
AGGCTCTGACCAATTGTGACATTCGCCAAGGCTTAGCGAATCTGGCAAAT
GGAAAGGTAGCGAACTCGTTGACTGGGTAG
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