Gchil6319.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6319.t1
Unique NameGchil6319.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:101968..103479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9371.XP_004711822.1
Preferred nameFH
PFAMsFumaraseC_C,Lyase_1
Max annot lvl33208|Metazoa
KEGG rclassRC00443
KEGG koko:K01679
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
GOsGO:0001894,GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048871,GO:0048872,GO:0048873,GO:0055114,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072350
Evalue1.01e-237
EggNOG OGsCOG0114@1|root,KOG1317@2759|Eukaryota,38GHX@33154|Opisthokonta,3BB3C@33208|Metazoa,3CUSS@33213|Bilateria,487GR@7711|Chordata,490UB@7742|Vertebrata,3J6FA@40674|Mammalia,351MH@311790|Afrotheria
EC4.2.1.2
DescriptionFumarase C C-terminus
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6319Gchil6319Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 101968..103479 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6319.t1.stop1Gchil6319.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 101968..101970 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6319.t1.CDS1Gchil6319.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 101968..103479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6319.t1.exon1Gchil6319.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 101968..103479 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6319.t1.start1Gchil6319.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 103477..103479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6319.t1Gchil6319.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 101968..103479 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6319.t1 ID=Gchil6319.t1|Name=Gchil6319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MRVSAFTMPAPRPLPSLLGRLLRPPLNSRPVRPFHSTLPKMNTRIEKDTF
GEIKVPADRYWGAQTQRSISNFDICRNTDRMPLPVIHAFGVLKQATAFAN
RHYGLDNSIATAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVNEVI
SNRAIEILGGQLGSKTPVHPNDHVNKSQSSNDTFPTAMHIALALELNTRL
IPSLTSLADAFDRKADQYSHIIKIGRTHCMDAVPLTYGQELSAYVRQLRQ
AVSRVRACLPDVYELAIGATAVGTGLNTRVGFAEKVCEKVAELTGLPFVS
AENKFEALAAHDAVVFTSGALNTAAASLMKIANDVRLLGSGPRCGLGELM
LPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAITVGGTNGHFELNV
FKPMMIHNVLHSARLLSDCAASFERHCIEGLKVNEKRVAQLLTESLMLVT
ALNPVIGYDKAAQIAKKAHKEGTTLRQAAVSLGILTEDKFDEFVVPANMI
GPK*
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spliced messenger RNA

>Gchil6319.t1 ID=Gchil6319.t1|Name=Gchil6319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000196_pilon:101968..103479- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGTCAGCGCCTTTACCATGCCCGCACCCCGTCCGCTGCCCTCGCT
TCTTGGACGTCTCCTCCGCCCGCCCCTCAATTCCCGCCCCGTGCGTCCGT
TTCACTCCACGCTACCGAAAATGAACACTCGAATCGAGAAAGACACCTTT
GGCGAAATCAAAGTTCCTGCAGATCGCTACTGGGGCGCTCAGACCCAGCG
ATCCATTTCTAACTTCGACATCTGCAGAAATACTGATAGAATGCCCTTGC
CCGTCATCCACGCCTTTGGTGTTCTCAAACAGGCCACCGCGTTTGCCAAT
CGCCACTACGGTCTGGACAATTCCATCGCCACCGCTATTGAGACCGCTGC
CGCAGACGTCGCCGCCGGGAAACTCGATGATCATTTCCCGCTCGTCGTGT
GGCAGACTGGCTCTGGCACCCAGTCCAACATGAACGTCAACGAGGTAATC
TCAAACAGAGCTATTGAGATTCTGGGCGGCCAGCTCGGCTCCAAAACCCC
AGTGCATCCGAACGACCACGTCAACAAGTCACAGTCCTCAAACGACACCT
TTCCAACAGCCATGCACATCGCCCTCGCCCTCGAATTGAACACCCGTCTC
ATCCCCTCGCTCACCTCGCTTGCCGACGCCTTTGACCGCAAGGCCGATCA
ATACAGTCACATCATTAAAATCGGACGCACCCATTGCATGGACGCCGTTC
CGCTCACCTACGGCCAAGAGTTGTCCGCCTACGTGAGACAACTTCGTCAG
GCTGTGTCGCGAGTCCGTGCGTGTCTGCCAGACGTTTACGAGCTTGCCAT
TGGCGCCACAGCCGTTGGTACTGGCTTGAACACCCGCGTTGGTTTTGCTG
AAAAGGTTTGTGAAAAGGTTGCAGAGCTTACTGGCTTACCTTTCGTCTCT
GCGGAAAATAAGTTTGAAGCCTTGGCCGCGCATGACGCCGTCGTTTTTAC
GAGTGGTGCGTTGAACACCGCTGCCGCTTCGCTCATGAAGATCGCGAATG
ACGTTCGATTGCTCGGATCAGGACCCCGCTGTGGGCTTGGAGAACTCATG
TTGCCCGAGAATGAGCCTGGAAGTTCTATCATGCCCGGCAAAGTCAATCC
TACGCAATGTGAAGCGGTCACGATGGCATGCGCTCAAGTAATTGGTAATC
ACGTCGCAATCACTGTCGGCGGGACCAATGGCCACTTTGAGTTGAACGTA
TTCAAACCGATGATGATTCATAACGTGCTTCATAGCGCTAGACTACTTAG
TGATTGTGCTGCGTCCTTTGAAAGGCATTGTATTGAAGGCCTCAAGGTGA
ATGAGAAGAGAGTCGCTCAGCTTCTGACTGAGAGCCTGATGCTGGTTACT
GCATTGAATCCGGTTATTGGATATGATAAGGCTGCGCAGATCGCGAAGAA
GGCACACAAGGAAGGAACCACATTACGGCAGGCGGCTGTATCTCTTGGCA
TTTTAACGGAAGATAAGTTCGATGAGTTTGTTGTACCTGCAAACATGATT
GGACCAAAGTAA
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protein sequence of Gchil6319.t1

>Gchil6319.t1 ID=Gchil6319.t1|Name=Gchil6319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MRVSAFTMPAPRPLPSLLGRLLRPPLNSRPVRPFHSTLPKMNTRIEKDTF
GEIKVPADRYWGAQTQRSISNFDICRNTDRMPLPVIHAFGVLKQATAFAN
RHYGLDNSIATAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVNEVI
SNRAIEILGGQLGSKTPVHPNDHVNKSQSSNDTFPTAMHIALALELNTRL
IPSLTSLADAFDRKADQYSHIIKIGRTHCMDAVPLTYGQELSAYVRQLRQ
AVSRVRACLPDVYELAIGATAVGTGLNTRVGFAEKVCEKVAELTGLPFVS
AENKFEALAAHDAVVFTSGALNTAAASLMKIANDVRLLGSGPRCGLGELM
LPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAITVGGTNGHFELNV
FKPMMIHNVLHSARLLSDCAASFERHCIEGLKVNEKRVAQLLTESLMLVT
ALNPVIGYDKAAQIAKKAHKEGTTLRQAAVSLGILTEDKFDEFVVPANMI
GPK*
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mRNA from alignment at tig00000196_pilon:101968..103479-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6319.t1 ID=Gchil6319.t1|Name=Gchil6319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000196_pilon:101968..103479- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGTCAGCGCCTTTACCATGCCCGCACCCCGTCCGCTGCCCTCGCT
TCTTGGACGTCTCCTCCGCCCGCCCCTCAATTCCCGCCCCGTGCGTCCGT
TTCACTCCACGCTACCGAAAATGAACACTCGAATCGAGAAAGACACCTTT
GGCGAAATCAAAGTTCCTGCAGATCGCTACTGGGGCGCTCAGACCCAGCG
ATCCATTTCTAACTTCGACATCTGCAGAAATACTGATAGAATGCCCTTGC
CCGTCATCCACGCCTTTGGTGTTCTCAAACAGGCCACCGCGTTTGCCAAT
CGCCACTACGGTCTGGACAATTCCATCGCCACCGCTATTGAGACCGCTGC
CGCAGACGTCGCCGCCGGGAAACTCGATGATCATTTCCCGCTCGTCGTGT
GGCAGACTGGCTCTGGCACCCAGTCCAACATGAACGTCAACGAGGTAATC
TCAAACAGAGCTATTGAGATTCTGGGCGGCCAGCTCGGCTCCAAAACCCC
AGTGCATCCGAACGACCACGTCAACAAGTCACAGTCCTCAAACGACACCT
TTCCAACAGCCATGCACATCGCCCTCGCCCTCGAATTGAACACCCGTCTC
ATCCCCTCGCTCACCTCGCTTGCCGACGCCTTTGACCGCAAGGCCGATCA
ATACAGTCACATCATTAAAATCGGACGCACCCATTGCATGGACGCCGTTC
CGCTCACCTACGGCCAAGAGTTGTCCGCCTACGTGAGACAACTTCGTCAG
GCTGTGTCGCGAGTCCGTGCGTGTCTGCCAGACGTTTACGAGCTTGCCAT
TGGCGCCACAGCCGTTGGTACTGGCTTGAACACCCGCGTTGGTTTTGCTG
AAAAGGTTTGTGAAAAGGTTGCAGAGCTTACTGGCTTACCTTTCGTCTCT
GCGGAAAATAAGTTTGAAGCCTTGGCCGCGCATGACGCCGTCGTTTTTAC
GAGTGGTGCGTTGAACACCGCTGCCGCTTCGCTCATGAAGATCGCGAATG
ACGTTCGATTGCTCGGATCAGGACCCCGCTGTGGGCTTGGAGAACTCATG
TTGCCCGAGAATGAGCCTGGAAGTTCTATCATGCCCGGCAAAGTCAATCC
TACGCAATGTGAAGCGGTCACGATGGCATGCGCTCAAGTAATTGGTAATC
ACGTCGCAATCACTGTCGGCGGGACCAATGGCCACTTTGAGTTGAACGTA
TTCAAACCGATGATGATTCATAACGTGCTTCATAGCGCTAGACTACTTAG
TGATTGTGCTGCGTCCTTTGAAAGGCATTGTATTGAAGGCCTCAAGGTGA
ATGAGAAGAGAGTCGCTCAGCTTCTGACTGAGAGCCTGATGCTGGTTACT
GCATTGAATCCGGTTATTGGATATGATAAGGCTGCGCAGATCGCGAAGAA
GGCACACAAGGAAGGAACCACATTACGGCAGGCGGCTGTATCTCTTGGCA
TTTTAACGGAAGATAAGTTCGATGAGTTTGTTGTACCTGCAAACATGATT
GGACCAAAGTAA
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Coding sequence (CDS) from alignment at tig00000196_pilon:101968..103479-

>Gchil6319.t1 ID=Gchil6319.t1|Name=Gchil6319.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000196_pilon:101968..103479- (Gracilaria chilensis NLEC103_M9 male)
ATGCGAGTCAGCGCCTTTACCATGCCCGCACCCCGTCCGCTGCCCTCGCT
TCTTGGACGTCTCCTCCGCCCGCCCCTCAATTCCCGCCCCGTGCGTCCGT
TTCACTCCACGCTACCGAAAATGAACACTCGAATCGAGAAAGACACCTTT
GGCGAAATCAAAGTTCCTGCAGATCGCTACTGGGGCGCTCAGACCCAGCG
ATCCATTTCTAACTTCGACATCTGCAGAAATACTGATAGAATGCCCTTGC
CCGTCATCCACGCCTTTGGTGTTCTCAAACAGGCCACCGCGTTTGCCAAT
CGCCACTACGGTCTGGACAATTCCATCGCCACCGCTATTGAGACCGCTGC
CGCAGACGTCGCCGCCGGGAAACTCGATGATCATTTCCCGCTCGTCGTGT
GGCAGACTGGCTCTGGCACCCAGTCCAACATGAACGTCAACGAGGTAATC
TCAAACAGAGCTATTGAGATTCTGGGCGGCCAGCTCGGCTCCAAAACCCC
AGTGCATCCGAACGACCACGTCAACAAGTCACAGTCCTCAAACGACACCT
TTCCAACAGCCATGCACATCGCCCTCGCCCTCGAATTGAACACCCGTCTC
ATCCCCTCGCTCACCTCGCTTGCCGACGCCTTTGACCGCAAGGCCGATCA
ATACAGTCACATCATTAAAATCGGACGCACCCATTGCATGGACGCCGTTC
CGCTCACCTACGGCCAAGAGTTGTCCGCCTACGTGAGACAACTTCGTCAG
GCTGTGTCGCGAGTCCGTGCGTGTCTGCCAGACGTTTACGAGCTTGCCAT
TGGCGCCACAGCCGTTGGTACTGGCTTGAACACCCGCGTTGGTTTTGCTG
AAAAGGTTTGTGAAAAGGTTGCAGAGCTTACTGGCTTACCTTTCGTCTCT
GCGGAAAATAAGTTTGAAGCCTTGGCCGCGCATGACGCCGTCGTTTTTAC
GAGTGGTGCGTTGAACACCGCTGCCGCTTCGCTCATGAAGATCGCGAATG
ACGTTCGATTGCTCGGATCAGGACCCCGCTGTGGGCTTGGAGAACTCATG
TTGCCCGAGAATGAGCCTGGAAGTTCTATCATGCCCGGCAAAGTCAATCC
TACGCAATGTGAAGCGGTCACGATGGCATGCGCTCAAGTAATTGGTAATC
ACGTCGCAATCACTGTCGGCGGGACCAATGGCCACTTTGAGTTGAACGTA
TTCAAACCGATGATGATTCATAACGTGCTTCATAGCGCTAGACTACTTAG
TGATTGTGCTGCGTCCTTTGAAAGGCATTGTATTGAAGGCCTCAAGGTGA
ATGAGAAGAGAGTCGCTCAGCTTCTGACTGAGAGCCTGATGCTGGTTACT
GCATTGAATCCGGTTATTGGATATGATAAGGCTGCGCAGATCGCGAAGAA
GGCACACAAGGAAGGAACCACATTACGGCAGGCGGCTGTATCTCTTGGCA
TTTTAACGGAAGATAAGTTCGATGAGTTTGTTGTACCTGCAAACATGATT
GGACCAAAGTAA
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