Gchil6311.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6311.t1
Unique NameGchil6311.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000196_piloncontigtig00000196_pilon:78375..79211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039927.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Evalue9.39e-39
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6311Gchil6311Gracilaria chilensis NLEC103_M9 malegenetig00000196_pilon 78375..79211 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6311.t1.stop1Gchil6311.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000196_pilon 78375..78377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6311.t1.CDS1Gchil6311.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000196_pilon 78375..79211 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6311.t1.exon1Gchil6311.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000196_pilon 78375..79211 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6311.t1.start1Gchil6311.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000196_pilon 79209..79211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6311.t1Gchil6311.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000196_pilon 78375..79211 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6311.t1 ID=Gchil6311.t1|Name=Gchil6311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=279bp
MRAASPRPLAVGLEMVQTAFQPALDAFIAGRLSELDLYLRTQWESRWVWP
YELYLPVLRACRRLSIPLVALAIDSDALTNLRAAAAAAAAPPAAPVSDAS
ALQMRTHVADPAVFAAMMRESAFKTYVNECITPSYAAHYKLGLLSEATNF
NTYFTTRMFRDEAMATAAVRYLVANPSTTLVCLLGADHVKFEYGVAGRVR
RQLAARRPSAPLLTTVMLNPGPPDAYNPSDGSLKLEMPVGDTPLPIADYL
WFSSPADANPRRQIKRRVLPPIERLTSS*
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spliced messenger RNA

>Gchil6311.t1 ID=Gchil6311.t1|Name=Gchil6311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000196_pilon:78375..79211- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGCGGCCTCGCCCCGCCCGCTGGCCGTCGGCCTCGAGATGGTGCA
GACCGCCTTTCAGCCCGCCCTGGACGCTTTTATTGCCGGCCGTCTCTCCG
AGCTCGACCTCTACCTGCGCACGCAGTGGGAGTCGCGCTGGGTCTGGCCC
TATGAGCTCTATCTTCCCGTCCTGCGCGCCTGCCGTCGCCTTTCCATTCC
GCTCGTCGCCCTCGCCATCGACTCCGACGCCCTCACCAACCTGCGCGCCG
CTGCCGCCGCCGCCGCCGCTCCCCCTGCCGCCCCCGTCTCCGACGCCTCC
GCCCTGCAAATGCGCACCCACGTCGCCGACCCCGCCGTCTTCGCCGCCAT
GATGCGCGAGTCCGCCTTCAAAACCTACGTCAACGAGTGCATCACCCCGA
GCTACGCCGCACACTACAAGCTCGGGCTGCTATCCGAGGCCACCAATTTC
AACACCTATTTCACCACCAGGATGTTTCGCGACGAGGCCATGGCCACCGC
CGCCGTGCGCTACCTCGTCGCCAACCCGTCCACCACCCTCGTCTGTCTGC
TGGGCGCCGACCACGTCAAGTTTGAGTACGGCGTCGCCGGCAGGGTGCGC
CGCCAGCTCGCCGCCCGCCGCCCCTCTGCCCCGCTCCTCACCACCGTCAT
GCTCAACCCCGGTCCGCCCGACGCCTACAACCCCTCCGACGGCAGCCTCA
AGCTCGAGATGCCCGTGGGCGACACTCCGCTCCCCATCGCCGACTACCTC
TGGTTCAGCTCGCCTGCCGACGCCAACCCGCGAAGGCAAATCAAGCGCCG
TGTATTACCACCCATTGAGCGTCTCACCAGCTCGTAG
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protein sequence of Gchil6311.t1

>Gchil6311.t1 ID=Gchil6311.t1|Name=Gchil6311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=279bp
MRAASPRPLAVGLEMVQTAFQPALDAFIAGRLSELDLYLRTQWESRWVWP
YELYLPVLRACRRLSIPLVALAIDSDALTNLRAAAAAAAAPPAAPVSDAS
ALQMRTHVADPAVFAAMMRESAFKTYVNECITPSYAAHYKLGLLSEATNF
NTYFTTRMFRDEAMATAAVRYLVANPSTTLVCLLGADHVKFEYGVAGRVR
RQLAARRPSAPLLTTVMLNPGPPDAYNPSDGSLKLEMPVGDTPLPIADYL
WFSSPADANPRRQIKRRVLPPIERLTSS*
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mRNA from alignment at tig00000196_pilon:78375..79211-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6311.t1 ID=Gchil6311.t1|Name=Gchil6311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000196_pilon:78375..79211- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGCGGCCTCGCCCCGCCCGCTGGCCGTCGGCCTCGAGATGGTGCA
GACCGCCTTTCAGCCCGCCCTGGACGCTTTTATTGCCGGCCGTCTCTCCG
AGCTCGACCTCTACCTGCGCACGCAGTGGGAGTCGCGCTGGGTCTGGCCC
TATGAGCTCTATCTTCCCGTCCTGCGCGCCTGCCGTCGCCTTTCCATTCC
GCTCGTCGCCCTCGCCATCGACTCCGACGCCCTCACCAACCTGCGCGCCG
CTGCCGCCGCCGCCGCCGCTCCCCCTGCCGCCCCCGTCTCCGACGCCTCC
GCCCTGCAAATGCGCACCCACGTCGCCGACCCCGCCGTCTTCGCCGCCAT
GATGCGCGAGTCCGCCTTCAAAACCTACGTCAACGAGTGCATCACCCCGA
GCTACGCCGCACACTACAAGCTCGGGCTGCTATCCGAGGCCACCAATTTC
AACACCTATTTCACCACCAGGATGTTTCGCGACGAGGCCATGGCCACCGC
CGCCGTGCGCTACCTCGTCGCCAACCCGTCCACCACCCTCGTCTGTCTGC
TGGGCGCCGACCACGTCAAGTTTGAGTACGGCGTCGCCGGCAGGGTGCGC
CGCCAGCTCGCCGCCCGCCGCCCCTCTGCCCCGCTCCTCACCACCGTCAT
GCTCAACCCCGGTCCGCCCGACGCCTACAACCCCTCCGACGGCAGCCTCA
AGCTCGAGATGCCCGTGGGCGACACTCCGCTCCCCATCGCCGACTACCTC
TGGTTCAGCTCGCCTGCCGACGCCAACCCGCGAAGGCAAATCAAGCGCCG
TGTATTACCACCCATTGAGCGTCTCACCAGCTCGTAG
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Coding sequence (CDS) from alignment at tig00000196_pilon:78375..79211-

>Gchil6311.t1 ID=Gchil6311.t1|Name=Gchil6311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000196_pilon:78375..79211- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGCGGCCTCGCCCCGCCCGCTGGCCGTCGGCCTCGAGATGGTGCA
GACCGCCTTTCAGCCCGCCCTGGACGCTTTTATTGCCGGCCGTCTCTCCG
AGCTCGACCTCTACCTGCGCACGCAGTGGGAGTCGCGCTGGGTCTGGCCC
TATGAGCTCTATCTTCCCGTCCTGCGCGCCTGCCGTCGCCTTTCCATTCC
GCTCGTCGCCCTCGCCATCGACTCCGACGCCCTCACCAACCTGCGCGCCG
CTGCCGCCGCCGCCGCCGCTCCCCCTGCCGCCCCCGTCTCCGACGCCTCC
GCCCTGCAAATGCGCACCCACGTCGCCGACCCCGCCGTCTTCGCCGCCAT
GATGCGCGAGTCCGCCTTCAAAACCTACGTCAACGAGTGCATCACCCCGA
GCTACGCCGCACACTACAAGCTCGGGCTGCTATCCGAGGCCACCAATTTC
AACACCTATTTCACCACCAGGATGTTTCGCGACGAGGCCATGGCCACCGC
CGCCGTGCGCTACCTCGTCGCCAACCCGTCCACCACCCTCGTCTGTCTGC
TGGGCGCCGACCACGTCAAGTTTGAGTACGGCGTCGCCGGCAGGGTGCGC
CGCCAGCTCGCCGCCCGCCGCCCCTCTGCCCCGCTCCTCACCACCGTCAT
GCTCAACCCCGGTCCGCCCGACGCCTACAACCCCTCCGACGGCAGCCTCA
AGCTCGAGATGCCCGTGGGCGACACTCCGCTCCCCATCGCCGACTACCTC
TGGTTCAGCTCGCCTGCCGACGCCAACCCGCGAAGGCAAATCAAGCGCCG
TGTATTACCACCCATTGAGCGTCTCACCAGCTCGTAG
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