Gchil630.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil630.t1
Unique Name	Gchil630.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	732

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:693479..695674 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008297795.1
Preferred name	NOP9
PFAMs	PUF
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14790
Evalue	3.26e-19
EggNOG OGs	KOG2188@1\|root,KOG2188@2759\|Eukaryota,38E8H@33154\|Opisthokonta,3BGW1@33208\|Metazoa,3CV0J@33213\|Bilateria,487FX@7711\|Chordata,48WKU@7742\|Vertebrata,49UM1@7898\|Actinopterygii
Description	Nucleolar protein
COG category	J
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil630	Gchil630	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 693479..695674 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil630.t1.stop1	Gchil630.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 693479..693481 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil630.t1.CDS1	Gchil630.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 693479..695674 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil630.t1.exon1	Gchil630.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 693479..695674 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil630.t1.start1	Gchil630.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 695672..695674 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil630.t1	Gchil630.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 693479..695674 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:693479..695674-
coding sequence from alignment at tig00004380_pilon:693479..695674-

mRNA sequence

>Gchil630.t1 ID=Gchil630.t1|Name=Gchil630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=732bp
MDSTDVRNHQPEQPKFINHSNANTPNYFSGFTAVHEPRLDNELESYLRKL
QDELEALDPGAEIAANWQPGQAEDLPPSVLLAQNALQELSSRVSEVARDN
YAARVVEALLRSIKDAEALATFLQAILDCGPSRVADMATHRCASHVIQTS
INAFRHASGGDCHSVIENLGTTISSLADEAVLEVIRSPSGSHVFRTIIGT
LSGLPDDEPREARLDDSNPGKVESYIEAYGKEVPEEWVRNVRSLGARLLE
SASLSIATLLWEPASCTALQALLSGLAVRDKSIVKQIGQRAIEVGFDRLI
HDSCGSRFLERLILILGFDIVEPHAKGRLAEFAAHPRANFCLQRMLLGLK
GRGQVMSAWDELETSLPELLGRGQAREGVILALLRITEVEGDENCRRRAA
RAVLRAVGATGKKTAHLAGFMALGSEIMWEKWRTAVSNLQRGELGLHGKD
NDEFRVPYRFPSPQLLGTLMARCLMRFPGGPGQSARDSMAILTSLELLVL
AGHPIGSRLIEQWIDDADLERSSKNAARMLKVTKEGGDSGIIALARNPYG
AMVLIKCVRRLSGNERKKVMDKLASFCEVLKTHEFGQVVIRKCRVEQYIR
RGLQWQREETGRETRERLFSEILNDDLEETPVVQEQPKGAGDSHSRTRKR
KREKLEIFQTSRTSKTYKATKTAIHVSATDSKLVKHSPNEIGQGGGGSNN
LSDLTPVLSAIESVAKPKKSKKKKLKTEGRK*

spliced messenger RNA

>Gchil630.t1 ID=Gchil630.t1|Name=Gchil630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00004380_pilon:693479..695674- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCAACAGATGTTAGAAACCATCAGCCAGAACAACCCAAATTCAT
CAATCATTCAAATGCCAACACACCCAACTATTTCTCGGGCTTCACTGCTG
TGCATGAACCCAGACTAGACAATGAACTGGAAAGCTATCTTAGAAAATTG
CAGGACGAACTCGAAGCCCTTGATCCTGGTGCTGAAATCGCAGCGAACTG
GCAACCTGGCCAAGCCGAAGATTTACCACCTTCGGTTTTGCTTGCCCAGA
ATGCGCTTCAAGAACTGTCATCTCGCGTTAGCGAAGTAGCGCGCGACAAT
TATGCTGCTCGTGTGGTAGAAGCTCTACTTCGATCCATTAAGGATGCGGA
AGCGCTAGCAACCTTCCTGCAGGCCATTCTTGACTGCGGCCCATCTAGAG
TAGCAGACATGGCTACACACAGGTGTGCCAGCCACGTGATTCAGACGAGT
ATCAACGCATTTCGCCATGCATCTGGTGGAGACTGTCATTCGGTTATAGA
AAACCTTGGAACAACGATCTCCTCTTTGGCTGATGAAGCCGTTCTGGAGG
TTATTCGTAGCCCTTCTGGAAGTCATGTATTTCGTACAATTATTGGCACA
CTTTCAGGACTACCGGACGATGAGCCTCGAGAAGCAAGGCTGGACGACTC
AAACCCAGGAAAGGTTGAGAGTTATATTGAAGCTTATGGGAAAGAAGTAC
CTGAAGAATGGGTTCGAAATGTGCGTTCTCTCGGCGCGAGGCTCTTGGAG
TCTGCGTCTCTATCAATTGCAACTTTGCTCTGGGAACCAGCTTCATGTAC
AGCTCTCCAAGCGCTTCTTTCCGGTCTCGCAGTTAGAGATAAGTCCATTG
TAAAGCAAATCGGGCAAAGAGCAATCGAGGTTGGTTTTGATCGTCTGATC
CATGACAGTTGTGGTAGTAGGTTCTTAGAACGCCTAATTCTGATTCTCGG
TTTTGACATAGTAGAACCTCATGCGAAGGGACGACTCGCCGAATTCGCTG
CTCACCCGAGAGCAAACTTTTGCTTGCAGAGAATGTTACTAGGTTTGAAA
GGGCGTGGTCAGGTCATGTCAGCCTGGGACGAGTTGGAGACATCCTTGCC
CGAACTGCTTGGACGTGGACAAGCTCGCGAAGGGGTCATCCTTGCTCTGC
TGCGCATTACCGAAGTAGAAGGAGATGAAAACTGTCGGAGAAGAGCAGCT
CGAGCTGTGTTGAGAGCTGTCGGTGCTACCGGAAAAAAGACGGCTCATTT
AGCCGGATTTATGGCACTAGGATCTGAGATAATGTGGGAGAAGTGGAGAA
CTGCCGTTAGCAATTTGCAGAGAGGAGAATTGGGTTTGCACGGGAAAGAT
AATGACGAGTTTCGTGTCCCGTATCGTTTTCCATCTCCTCAATTGTTAGG
AACACTAATGGCTCGATGTTTGATGCGGTTCCCTGGTGGCCCGGGTCAAT
CCGCACGTGATTCAATGGCGATTCTAACCTCATTAGAGCTCTTGGTCTTA
GCTGGACATCCCATTGGGAGTCGACTCATTGAGCAGTGGATTGATGATGC
AGATCTAGAGAGAAGTTCCAAGAACGCTGCTAGAATGCTGAAGGTCACAA
AAGAAGGCGGTGACTCAGGGATTATTGCCCTTGCGAGAAATCCATACGGG
GCGATGGTCCTAATCAAATGCGTACGTCGTCTGTCGGGAAACGAGAGGAA
GAAAGTAATGGACAAGCTTGCATCGTTTTGTGAAGTCTTGAAAACCCACG
AATTTGGCCAAGTTGTGATTCGGAAATGTCGAGTGGAGCAGTACATACGG
CGGGGTCTTCAATGGCAAAGGGAAGAGACTGGACGGGAAACTCGCGAAAG
ACTCTTTTCAGAAATTTTAAACGACGACTTGGAAGAAACCCCCGTCGTAC
AGGAGCAACCAAAAGGGGCTGGTGATTCGCATTCAAGGACTCGGAAACGA
AAGAGGGAGAAGCTTGAAATTTTTCAGACGTCGCGCACGAGCAAAACATA
CAAAGCGACCAAAACCGCAATACATGTGTCTGCAACTGATTCTAAACTCG
TGAAACACTCACCAAACGAAATAGGCCAAGGAGGGGGAGGTAGCAACAAT
CTTTCCGATCTAACACCAGTGTTAAGCGCAATTGAATCAGTCGCTAAACC
GAAGAAGTCAAAGAAAAAGAAATTGAAAACTGAGGGACGGAAATAA

protein sequence of Gchil630.t1

>Gchil630.t1 ID=Gchil630.t1|Name=Gchil630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=732bp
MDSTDVRNHQPEQPKFINHSNANTPNYFSGFTAVHEPRLDNELESYLRKL
QDELEALDPGAEIAANWQPGQAEDLPPSVLLAQNALQELSSRVSEVARDN
YAARVVEALLRSIKDAEALATFLQAILDCGPSRVADMATHRCASHVIQTS
INAFRHASGGDCHSVIENLGTTISSLADEAVLEVIRSPSGSHVFRTIIGT
LSGLPDDEPREARLDDSNPGKVESYIEAYGKEVPEEWVRNVRSLGARLLE
SASLSIATLLWEPASCTALQALLSGLAVRDKSIVKQIGQRAIEVGFDRLI
HDSCGSRFLERLILILGFDIVEPHAKGRLAEFAAHPRANFCLQRMLLGLK
GRGQVMSAWDELETSLPELLGRGQAREGVILALLRITEVEGDENCRRRAA
RAVLRAVGATGKKTAHLAGFMALGSEIMWEKWRTAVSNLQRGELGLHGKD
NDEFRVPYRFPSPQLLGTLMARCLMRFPGGPGQSARDSMAILTSLELLVL
AGHPIGSRLIEQWIDDADLERSSKNAARMLKVTKEGGDSGIIALARNPYG
AMVLIKCVRRLSGNERKKVMDKLASFCEVLKTHEFGQVVIRKCRVEQYIR
RGLQWQREETGRETRERLFSEILNDDLEETPVVQEQPKGAGDSHSRTRKR
KREKLEIFQTSRTSKTYKATKTAIHVSATDSKLVKHSPNEIGQGGGGSNN
LSDLTPVLSAIESVAKPKKSKKKKLKTEGRK*

mRNA from alignment at tig00004380_pilon:693479..695674-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil630.t1 ID=Gchil630.t1|Name=Gchil630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2196bp|location=Sequence derived from alignment at tig00004380_pilon:693479..695674- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAACAGATGTTAGAAACCATCAGCCAGAACAACCCAAATTCAT
CAATCATTCAAATGCCAACACACCCAACTATTTCTCGGGCTTCACTGCTG
TGCATGAACCCAGACTAGACAATGAACTGGAAAGCTATCTTAGAAAATTG
CAGGACGAACTCGAAGCCCTTGATCCTGGTGCTGAAATCGCAGCGAACTG
GCAACCTGGCCAAGCCGAAGATTTACCACCTTCGGTTTTGCTTGCCCAGA
ATGCGCTTCAAGAACTGTCATCTCGCGTTAGCGAAGTAGCGCGCGACAAT
TATGCTGCTCGTGTGGTAGAAGCTCTACTTCGATCCATTAAGGATGCGGA
AGCGCTAGCAACCTTCCTGCAGGCCATTCTTGACTGCGGCCCATCTAGAG
TAGCAGACATGGCTACACACAGGTGTGCCAGCCACGTGATTCAGACGAGT
ATCAACGCATTTCGCCATGCATCTGGTGGAGACTGTCATTCGGTTATAGA
AAACCTTGGAACAACGATCTCCTCTTTGGCTGATGAAGCCGTTCTGGAGG
TTATTCGTAGCCCTTCTGGAAGTCATGTATTTCGTACAATTATTGGCACA
CTTTCAGGACTACCGGACGATGAGCCTCGAGAAGCAAGGCTGGACGACTC
AAACCCAGGAAAGGTTGAGAGTTATATTGAAGCTTATGGGAAAGAAGTAC
CTGAAGAATGGGTTCGAAATGTGCGTTCTCTCGGCGCGAGGCTCTTGGAG
TCTGCGTCTCTATCAATTGCAACTTTGCTCTGGGAACCAGCTTCATGTAC
AGCTCTCCAAGCGCTTCTTTCCGGTCTCGCAGTTAGAGATAAGTCCATTG
TAAAGCAAATCGGGCAAAGAGCAATCGAGGTTGGTTTTGATCGTCTGATC
CATGACAGTTGTGGTAGTAGGTTCTTAGAACGCCTAATTCTGATTCTCGG
TTTTGACATAGTAGAACCTCATGCGAAGGGACGACTCGCCGAATTCGCTG
CTCACCCGAGAGCAAACTTTTGCTTGCAGAGAATGTTACTAGGTTTGAAA
GGGCGTGGTCAGGTCATGTCAGCCTGGGACGAGTTGGAGACATCCTTGCC
CGAACTGCTTGGACGTGGACAAGCTCGCGAAGGGGTCATCCTTGCTCTGC
TGCGCATTACCGAAGTAGAAGGAGATGAAAACTGTCGGAGAAGAGCAGCT
CGAGCTGTGTTGAGAGCTGTCGGTGCTACCGGAAAAAAGACGGCTCATTT
AGCCGGATTTATGGCACTAGGATCTGAGATAATGTGGGAGAAGTGGAGAA
CTGCCGTTAGCAATTTGCAGAGAGGAGAATTGGGTTTGCACGGGAAAGAT
AATGACGAGTTTCGTGTCCCGTATCGTTTTCCATCTCCTCAATTGTTAGG
AACACTAATGGCTCGATGTTTGATGCGGTTCCCTGGTGGCCCGGGTCAAT
CCGCACGTGATTCAATGGCGATTCTAACCTCATTAGAGCTCTTGGTCTTA
GCTGGACATCCCATTGGGAGTCGACTCATTGAGCAGTGGATTGATGATGC
AGATCTAGAGAGAAGTTCCAAGAACGCTGCTAGAATGCTGAAGGTCACAA
AAGAAGGCGGTGACTCAGGGATTATTGCCCTTGCGAGAAATCCATACGGG
GCGATGGTCCTAATCAAATGCGTACGTCGTCTGTCGGGAAACGAGAGGAA
GAAAGTAATGGACAAGCTTGCATCGTTTTGTGAAGTCTTGAAAACCCACG
AATTTGGCCAAGTTGTGATTCGGAAATGTCGAGTGGAGCAGTACATACGG
CGGGGTCTTCAATGGCAAAGGGAAGAGACTGGACGGGAAACTCGCGAAAG
ACTCTTTTCAGAAATTTTAAACGACGACTTGGAAGAAACCCCCGTCGTAC
AGGAGCAACCAAAAGGGGCTGGTGATTCGCATTCAAGGACTCGGAAACGA
AAGAGGGAGAAGCTTGAAATTTTTCAGACGTCGCGCACGAGCAAAACATA
CAAAGCGACCAAAACCGCAATACATGTGTCTGCAACTGATTCTAAACTCG
TGAAACACTCACCAAACGAAATAGGCCAAGGAGGGGGAGGTAGCAACAAT
CTTTCCGATCTAACACCAGTGTTAAGCGCAATTGAATCAGTCGCTAAACC
GAAGAAGTCAAAGAAAAAGAAATTGAAAACTGAGGGACGGAAATAA

Coding sequence (CDS) from alignment at tig00004380_pilon:693479..695674-

>Gchil630.t1 ID=Gchil630.t1|Name=Gchil630.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2196bp|location=Sequence derived from alignment at tig00004380_pilon:693479..695674- (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCAACAGATGTTAGAAACCATCAGCCAGAACAACCCAAATTCAT
CAATCATTCAAATGCCAACACACCCAACTATTTCTCGGGCTTCACTGCTG
TGCATGAACCCAGACTAGACAATGAACTGGAAAGCTATCTTAGAAAATTG
CAGGACGAACTCGAAGCCCTTGATCCTGGTGCTGAAATCGCAGCGAACTG
GCAACCTGGCCAAGCCGAAGATTTACCACCTTCGGTTTTGCTTGCCCAGA
ATGCGCTTCAAGAACTGTCATCTCGCGTTAGCGAAGTAGCGCGCGACAAT
TATGCTGCTCGTGTGGTAGAAGCTCTACTTCGATCCATTAAGGATGCGGA
AGCGCTAGCAACCTTCCTGCAGGCCATTCTTGACTGCGGCCCATCTAGAG
TAGCAGACATGGCTACACACAGGTGTGCCAGCCACGTGATTCAGACGAGT
ATCAACGCATTTCGCCATGCATCTGGTGGAGACTGTCATTCGGTTATAGA
AAACCTTGGAACAACGATCTCCTCTTTGGCTGATGAAGCCGTTCTGGAGG
TTATTCGTAGCCCTTCTGGAAGTCATGTATTTCGTACAATTATTGGCACA
CTTTCAGGACTACCGGACGATGAGCCTCGAGAAGCAAGGCTGGACGACTC
AAACCCAGGAAAGGTTGAGAGTTATATTGAAGCTTATGGGAAAGAAGTAC
CTGAAGAATGGGTTCGAAATGTGCGTTCTCTCGGCGCGAGGCTCTTGGAG
TCTGCGTCTCTATCAATTGCAACTTTGCTCTGGGAACCAGCTTCATGTAC
AGCTCTCCAAGCGCTTCTTTCCGGTCTCGCAGTTAGAGATAAGTCCATTG
TAAAGCAAATCGGGCAAAGAGCAATCGAGGTTGGTTTTGATCGTCTGATC
CATGACAGTTGTGGTAGTAGGTTCTTAGAACGCCTAATTCTGATTCTCGG
TTTTGACATAGTAGAACCTCATGCGAAGGGACGACTCGCCGAATTCGCTG
CTCACCCGAGAGCAAACTTTTGCTTGCAGAGAATGTTACTAGGTTTGAAA
GGGCGTGGTCAGGTCATGTCAGCCTGGGACGAGTTGGAGACATCCTTGCC
CGAACTGCTTGGACGTGGACAAGCTCGCGAAGGGGTCATCCTTGCTCTGC
TGCGCATTACCGAAGTAGAAGGAGATGAAAACTGTCGGAGAAGAGCAGCT
CGAGCTGTGTTGAGAGCTGTCGGTGCTACCGGAAAAAAGACGGCTCATTT
AGCCGGATTTATGGCACTAGGATCTGAGATAATGTGGGAGAAGTGGAGAA
CTGCCGTTAGCAATTTGCAGAGAGGAGAATTGGGTTTGCACGGGAAAGAT
AATGACGAGTTTCGTGTCCCGTATCGTTTTCCATCTCCTCAATTGTTAGG
AACACTAATGGCTCGATGTTTGATGCGGTTCCCTGGTGGCCCGGGTCAAT
CCGCACGTGATTCAATGGCGATTCTAACCTCATTAGAGCTCTTGGTCTTA
GCTGGACATCCCATTGGGAGTCGACTCATTGAGCAGTGGATTGATGATGC
AGATCTAGAGAGAAGTTCCAAGAACGCTGCTAGAATGCTGAAGGTCACAA
AAGAAGGCGGTGACTCAGGGATTATTGCCCTTGCGAGAAATCCATACGGG
GCGATGGTCCTAATCAAATGCGTACGTCGTCTGTCGGGAAACGAGAGGAA
GAAAGTAATGGACAAGCTTGCATCGTTTTGTGAAGTCTTGAAAACCCACG
AATTTGGCCAAGTTGTGATTCGGAAATGTCGAGTGGAGCAGTACATACGG
CGGGGTCTTCAATGGCAAAGGGAAGAGACTGGACGGGAAACTCGCGAAAG
ACTCTTTTCAGAAATTTTAAACGACGACTTGGAAGAAACCCCCGTCGTAC
AGGAGCAACCAAAAGGGGCTGGTGATTCGCATTCAAGGACTCGGAAACGA
AAGAGGGAGAAGCTTGAAATTTTTCAGACGTCGCGCACGAGCAAAACATA
CAAAGCGACCAAAACCGCAATACATGTGTCTGCAACTGATTCTAAACTCG
TGAAACACTCACCAAACGAAATAGGCCAAGGAGGGGGAGGTAGCAACAAT
CTTTCCGATCTAACACCAGTGTTAAGCGCAATTGAATCAGTCGCTAAACC
GAAGAAGTCAAAGAAAAAGAAATTGAAAACTGAGGGACGGAAATAA