Gchil628.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil628.t1
Unique NameGchil628.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:686034..687745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil628Gchil628Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 686034..687745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1Gchil628.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 686034..687745 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1.start1Gchil628.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 686034..686036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1.CDS1Gchil628.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 686034..686404 +
Gchil628.t1.CDS2Gchil628.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 686528..686655 +
Gchil628.t1.CDS3Gchil628.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 686748..687745 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1.exon1Gchil628.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 686034..686404 +
Gchil628.t1.exon2Gchil628.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 686528..686655 +
Gchil628.t1.exon3Gchil628.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 686748..687745 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1.intron1Gchil628.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 686405..686527 +
Gchil628.t1.intron2Gchil628.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 686656..686747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil628.t1.stop1Gchil628.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 687743..687745 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil628.t1 ID=Gchil628.t1|Name=Gchil628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=499bp
MIDVLRRDGSKRCTWSLTSVGKVWIGRIIVSDDSNLWESHTNGNRIINEN
FCLFLRKQEPGSKGLYSSRLLQAFTHSDEESTQVIRLSSSSFSEARLKHS
SSSFYNSLVAPHQVTALDVPPEIVCRWHLVQFVRMEEERKGKPVAVIGGM
YAKAKQRVLNKMGRRTTLTRNPRVDFISKRVEDIKSKKARVHSLAVSAKI
QLKETQKTITDLDRAMLDAFRDELGERKWDDDKGTYVRELHPEEKRLVAD
MERVLSRCRETMGRVVDSYLEHLEDTAKKPLTYNTPDEDMKLAKVMETKE
QYKLVRTLYSDAMIDQDAELASGGNPSSAIQTKVDESKRTYEEMSEKLCD
DALKYERIYRDELAQRVSSHFMAEQHLLRGVSLAMKDFMPYTKGLTLDWE
EMRTTRRSNLAAMKRGGFDDDEDLSELMTTALPRPEPPSSEKKEKSGSSP
LGEIASDISHGASSAAQALSSAGKSASKSISGIVASYGAKSAAKSLKP*
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spliced messenger RNA

>Gchil628.t1 ID=Gchil628.t1|Name=Gchil628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004380_pilon:686034..687745+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGACGTTCTGCGAAGAGATGGATCGAAGAGATGCACCTGGAGTCT
GACCTCTGTGGGGAAGGTCTGGATTGGTCGGATAATCGTATCAGACGACT
CAAATCTATGGGAAAGCCATACCAATGGAAATCGGATCATAAATGAAAAT
TTCTGTTTGTTTTTGCGAAAGCAGGAGCCGGGATCGAAGGGACTGTACAG
CAGTAGACTGCTCCAAGCATTCACGCACAGCGATGAAGAGTCAACTCAGG
TTATTCGACTCTCATCTTCGAGCTTTTCGGAGGCCCGCCTGAAACATTCG
TCGTCGTCGTTTTACAACTCTTTGGTTGCACCACATCAAGTCACTGCCCT
CGACGTGCCCCCTGAAATTGTGTGCCGTTGGCATCTGGTTCAATTTGTTA
GGATGGAAGAGGAAAGGAAAGGAAAGCCTGTCGCTGTCATCGGAGGAATG
TACGCTAAAGCAAAGCAAAGGGTGCTCAACAAGATGGGTAGGAGGACTAC
CCTCACTCGCAATCCGCGAGTTGACTTCATATCGAAGCGAGTTGAAGATA
TAAAATCTAAAAAGGCGCGCGTTCACAGCCTTGCAGTCAGCGCTAAGATT
CAGTTGAAGGAAACTCAGAAAACCATAACAGATCTGGATAGAGCCATGTT
GGATGCCTTTAGAGATGAACTTGGTGAACGGAAGTGGGATGACGATAAAG
GAACTTACGTTCGAGAGTTGCATCCGGAGGAAAAACGATTAGTTGCCGAC
ATGGAGCGAGTGCTCTCGAGATGCCGTGAAACCATGGGTAGAGTTGTGGA
TTCCTACCTTGAGCATCTTGAAGACACAGCCAAGAAGCCATTGACATACA
ATACCCCTGATGAGGATATGAAGTTGGCCAAGGTAATGGAGACAAAGGAA
CAGTATAAGCTTGTCCGCACTCTTTATTCTGACGCAATGATTGACCAAGA
TGCAGAACTGGCCAGCGGCGGCAACCCTTCGTCAGCCATTCAGACAAAGG
TAGACGAATCCAAACGCACATACGAAGAAATGTCTGAAAAACTTTGTGAT
GATGCCCTCAAATATGAACGTATTTACCGCGACGAGCTTGCACAGCGAGT
ATCTTCACACTTTATGGCGGAGCAACACTTATTACGTGGAGTCTCTTTAG
CCATGAAGGACTTCATGCCGTACACGAAGGGTCTAACCCTCGACTGGGAA
GAGATGCGCACCACGAGGCGATCAAATCTTGCTGCTATGAAGAGGGGTGG
CTTTGATGATGATGAAGATCTCTCTGAACTTATGACTACGGCTCTTCCCC
GACCGGAGCCACCCAGCTCTGAAAAGAAGGAAAAGAGTGGTTCCAGTCCA
TTGGGAGAAATTGCATCAGATATCTCTCATGGGGCAAGCAGTGCTGCTCA
AGCCCTCAGTAGTGCCGGCAAAAGCGCAAGCAAAAGCATCTCTGGAATAG
TAGCGTCGTACGGAGCGAAGTCAGCTGCCAAGAGCTTGAAACCCTGA
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protein sequence of Gchil628.t1

>Gchil628.t1 ID=Gchil628.t1|Name=Gchil628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=499bp
MIDVLRRDGSKRCTWSLTSVGKVWIGRIIVSDDSNLWESHTNGNRIINEN
FCLFLRKQEPGSKGLYSSRLLQAFTHSDEESTQVIRLSSSSFSEARLKHS
SSSFYNSLVAPHQVTALDVPPEIVCRWHLVQFVRMEEERKGKPVAVIGGM
YAKAKQRVLNKMGRRTTLTRNPRVDFISKRVEDIKSKKARVHSLAVSAKI
QLKETQKTITDLDRAMLDAFRDELGERKWDDDKGTYVRELHPEEKRLVAD
MERVLSRCRETMGRVVDSYLEHLEDTAKKPLTYNTPDEDMKLAKVMETKE
QYKLVRTLYSDAMIDQDAELASGGNPSSAIQTKVDESKRTYEEMSEKLCD
DALKYERIYRDELAQRVSSHFMAEQHLLRGVSLAMKDFMPYTKGLTLDWE
EMRTTRRSNLAAMKRGGFDDDEDLSELMTTALPRPEPPSSEKKEKSGSSP
LGEIASDISHGASSAAQALSSAGKSASKSISGIVASYGAKSAAKSLKP*
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mRNA from alignment at tig00004380_pilon:686034..687745+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil628.t1 ID=Gchil628.t1|Name=Gchil628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1712bp|location=Sequence derived from alignment at tig00004380_pilon:686034..687745+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAGACGTTCTGCGAAGAGATGGATCGAAGAGATGCACCTGGAGTCT
GACCTCTGTGGGGAAGGTCTGGATTGGTCGGATAATCGTATCAGACGACT
CAAATCTATGGGAAAGCCATACCAATGGAAATCGGATCATAAATGAAAAT
TTCTGTTTGTTTTTGCGAAAGCAGGAGCCGGGATCGAAGGGACTGTACAG
CAGTAGACTGCTCCAAGCATTCACGCACAGCGATGAAGAGTCAACTCAGG
TTATTCGACTCTCATCTTCGAGCTTTTCGGAGGCCCGCCTGAAACATTCG
TCGTCGTCGTTTTACAACTCTTTGGTTGCACCACATCAAGTCACTGCCCT
CGACGTGCCCCCTGAAATTGTGTATGTGGCGTCACGAAAACTAGTATTCT
AGTGAAGCTCCAAAAGTGCCATTTTCCCCGAGCCGAAACCCGCTTTCTAA
GCCACTTCAATTGCCTAGGGTTTTCGCGGCCGTATACTATATAGGTGCCG
TTGGCATCTGGTTCAATTTGTTAGGATGGAAGAGGAAAGGAAAGGAAAGC
CTGTCGCTGTCATCGGAGGAATGTACGCTAAAGCAAAGCAAAGGGTGCTC
AACAAGATGGGTAGGAGGACTAGTACGTTGAAGCAGTCTAGCGGTTCTAA
TCCTTGTTCTCTCGTTTGACTGCTAGCGATTTTGACACTAACCGTTTGGT
ATTTCGACGAAAAGCCCTCACTCGCAATCCGCGAGTTGACTTCATATCGA
AGCGAGTTGAAGATATAAAATCTAAAAAGGCGCGCGTTCACAGCCTTGCA
GTCAGCGCTAAGATTCAGTTGAAGGAAACTCAGAAAACCATAACAGATCT
GGATAGAGCCATGTTGGATGCCTTTAGAGATGAACTTGGTGAACGGAAGT
GGGATGACGATAAAGGAACTTACGTTCGAGAGTTGCATCCGGAGGAAAAA
CGATTAGTTGCCGACATGGAGCGAGTGCTCTCGAGATGCCGTGAAACCAT
GGGTAGAGTTGTGGATTCCTACCTTGAGCATCTTGAAGACACAGCCAAGA
AGCCATTGACATACAATACCCCTGATGAGGATATGAAGTTGGCCAAGGTA
ATGGAGACAAAGGAACAGTATAAGCTTGTCCGCACTCTTTATTCTGACGC
AATGATTGACCAAGATGCAGAACTGGCCAGCGGCGGCAACCCTTCGTCAG
CCATTCAGACAAAGGTAGACGAATCCAAACGCACATACGAAGAAATGTCT
GAAAAACTTTGTGATGATGCCCTCAAATATGAACGTATTTACCGCGACGA
GCTTGCACAGCGAGTATCTTCACACTTTATGGCGGAGCAACACTTATTAC
GTGGAGTCTCTTTAGCCATGAAGGACTTCATGCCGTACACGAAGGGTCTA
ACCCTCGACTGGGAAGAGATGCGCACCACGAGGCGATCAAATCTTGCTGC
TATGAAGAGGGGTGGCTTTGATGATGATGAAGATCTCTCTGAACTTATGA
CTACGGCTCTTCCCCGACCGGAGCCACCCAGCTCTGAAAAGAAGGAAAAG
AGTGGTTCCAGTCCATTGGGAGAAATTGCATCAGATATCTCTCATGGGGC
AAGCAGTGCTGCTCAAGCCCTCAGTAGTGCCGGCAAAAGCGCAAGCAAAA
GCATCTCTGGAATAGTAGCGTCGTACGGAGCGAAGTCAGCTGCCAAGAGC
TTGAAACCCTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:686034..687745+

>Gchil628.t1 ID=Gchil628.t1|Name=Gchil628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00004380_pilon:686034..687745+ (Gracilaria chilensis NLEC103_M9 male)
ATGATAGACGTTCTGCGAAGAGATGGATCGAAGAGATGCACCTGGAGTCT
GACCTCTGTGGGGAAGGTCTGGATTGGTCGGATAATCGTATCAGACGACT
CAAATCTATGGGAAAGCCATACCAATGGAAATCGGATCATAAATGAAAAT
TTCTGTTTGTTTTTGCGAAAGCAGGAGCCGGGATCGAAGGGACTGTACAG
CAGTAGACTGCTCCAAGCATTCACGCACAGCGATGAAGAGTCAACTCAGG
TTATTCGACTCTCATCTTCGAGCTTTTCGGAGGCCCGCCTGAAACATTCG
TCGTCGTCGTTTTACAACTCTTTGGTTGCACCACATCAAGTCACTGCCCT
CGACGTGCCCCCTGAAATTGTGTGCCGTTGGCATCTGGTTCAATTTGTTA
GGATGGAAGAGGAAAGGAAAGGAAAGCCTGTCGCTGTCATCGGAGGAATG
TACGCTAAAGCAAAGCAAAGGGTGCTCAACAAGATGGGTAGGAGGACTAC
CCTCACTCGCAATCCGCGAGTTGACTTCATATCGAAGCGAGTTGAAGATA
TAAAATCTAAAAAGGCGCGCGTTCACAGCCTTGCAGTCAGCGCTAAGATT
CAGTTGAAGGAAACTCAGAAAACCATAACAGATCTGGATAGAGCCATGTT
GGATGCCTTTAGAGATGAACTTGGTGAACGGAAGTGGGATGACGATAAAG
GAACTTACGTTCGAGAGTTGCATCCGGAGGAAAAACGATTAGTTGCCGAC
ATGGAGCGAGTGCTCTCGAGATGCCGTGAAACCATGGGTAGAGTTGTGGA
TTCCTACCTTGAGCATCTTGAAGACACAGCCAAGAAGCCATTGACATACA
ATACCCCTGATGAGGATATGAAGTTGGCCAAGGTAATGGAGACAAAGGAA
CAGTATAAGCTTGTCCGCACTCTTTATTCTGACGCAATGATTGACCAAGA
TGCAGAACTGGCCAGCGGCGGCAACCCTTCGTCAGCCATTCAGACAAAGG
TAGACGAATCCAAACGCACATACGAAGAAATGTCTGAAAAACTTTGTGAT
GATGCCCTCAAATATGAACGTATTTACCGCGACGAGCTTGCACAGCGAGT
ATCTTCACACTTTATGGCGGAGCAACACTTATTACGTGGAGTCTCTTTAG
CCATGAAGGACTTCATGCCGTACACGAAGGGTCTAACCCTCGACTGGGAA
GAGATGCGCACCACGAGGCGATCAAATCTTGCTGCTATGAAGAGGGGTGG
CTTTGATGATGATGAAGATCTCTCTGAACTTATGACTACGGCTCTTCCCC
GACCGGAGCCACCCAGCTCTGAAAAGAAGGAAAAGAGTGGTTCCAGTCCA
TTGGGAGAAATTGCATCAGATATCTCTCATGGGGCAAGCAGTGCTGCTCA
AGCCCTCAGTAGTGCCGGCAAAAGCGCAAGCAAAAGCATCTCTGGAATAG
TAGCGTCGTACGGAGCGAAGTCAGCTGCCAAGAGCTTGAAACCCTGA
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