Gchil6260.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6260.t1
Unique NameGchil6260.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004388_piloncontigtig00004388_pilon:189602..190077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO45620
Preferred nameIER3IP1
PFAMsYos1
Max annot lvl33208|Metazoa
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0006810,GO:0006888,GO:0008150,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0042175,GO:0042981,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:2000269
Evalue1.36e-13
EggNOG OGsKOG4779@1|root,KOG4779@2759|Eukaryota,3A8CZ@33154|Opisthokonta,3BSRY@33208|Metazoa
Descriptionregulation of fibroblast apoptotic process
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6260Gchil6260Gracilaria chilensis NLEC103_M9 malegenetig00004388_pilon 189602..190077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1Gchil6260.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004388_pilon 189602..190077 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1.stop1Gchil6260.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004388_pilon 189602..189604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1.CDS1Gchil6260.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004388_pilon 189602..189657 -
Gchil6260.t1.CDS2Gchil6260.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004388_pilon 189799..189885 -
Gchil6260.t1.CDS3Gchil6260.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004388_pilon 189990..190077 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1.exon1Gchil6260.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004388_pilon 189602..189657 -
Gchil6260.t1.exon2Gchil6260.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004388_pilon 189799..189885 -
Gchil6260.t1.exon3Gchil6260.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004388_pilon 189990..190077 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1.intron1Gchil6260.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004388_pilon 189658..189798 -
Gchil6260.t1.intron2Gchil6260.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004388_pilon 189886..189989 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6260.t1.start1Gchil6260.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004388_pilon 190075..190077 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6260.t1 ID=Gchil6260.t1|Name=Gchil6260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=77bp
MLGLGTVFKALLLLVNSMAILHEERFLNKVGWSEQQAAIEGGVKLQIVNL
LKAFRVLRLPIIVVNSITVLVLMVVG*
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spliced messenger RNA

>Gchil6260.t1 ID=Gchil6260.t1|Name=Gchil6260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00004388_pilon:189602..190077- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGGGCTGGGTACTGTGTTCAAAGCGCTGCTGTTACTCGTCAACTC
CATGGCGATTCTTCATGAAGAACGGTTTCTCAACAAAGTCGGATGGTCTG
AACAGCAAGCCGCAATCGAAGGCGGTGTCAAGCTACAAATCGTCAATCTT
CTCAAAGCCTTCCGCGTTCTTCGACTCCCAATCATAGTGGTGAATTCGAT
CACTGTGCTAGTGTTGATGGTAGTGGGCTAG
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protein sequence of Gchil6260.t1

>Gchil6260.t1 ID=Gchil6260.t1|Name=Gchil6260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=77bp
MLGLGTVFKALLLLVNSMAILHEERFLNKVGWSEQQAAIEGGVKLQIVNL
LKAFRVLRLPIIVVNSITVLVLMVVG*
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mRNA from alignment at tig00004388_pilon:189602..190077-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6260.t1 ID=Gchil6260.t1|Name=Gchil6260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp|location=Sequence derived from alignment at tig00004388_pilon:189602..190077- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGGGCTGGGTACTGTGTTCAAAGCGCTGCTGTTACTCGTCAACTC
CATGGCGATTCTTCATGAAGAACGGTTTCTCAACAAAGGTAAGTCCTTTT
CTCTTCGAAAGACGGTAACGAGAGCCACGGTGGCTGTTTGAAAACCTTGC
GCAACGACCACTAACGGAAACGTCATTGCACGCCCCGTTTAGTCGGATGG
TCTGAACAGCAAGCCGCAATCGAAGGCGGTGTCAAGCTACAAATCGTCAA
TCTTCTCAAAGCCTTCCGCGTTCTTCGACGTAAGTTGATTCTATTGTTTT
GTTGGAATATGCGCCACACCTCTTATGACTACGCAACCGGTCTGACACCG
TTCCCTTTGCTCATCCTGCTCGCCATCTCCACCGTGCCCCTTTCCACCCA
CCCCGACCAACACACGAAAGTCCCAATCATAGTGGTGAATTCGATCACTG
TGCTAGTGTTGATGGTAGTGGGCTAG
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Coding sequence (CDS) from alignment at tig00004388_pilon:189602..190077-

>Gchil6260.t1 ID=Gchil6260.t1|Name=Gchil6260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=231bp|location=Sequence derived from alignment at tig00004388_pilon:189602..190077- (Gracilaria chilensis NLEC103_M9 male)
ATGTTAGGGCTGGGTACTGTGTTCAAAGCGCTGCTGTTACTCGTCAACTC
CATGGCGATTCTTCATGAAGAACGGTTTCTCAACAAAGTCGGATGGTCTG
AACAGCAAGCCGCAATCGAAGGCGGTGTCAAGCTACAAATCGTCAATCTT
CTCAAAGCCTTCCGCGTTCTTCGACTCCCAATCATAGTGGTGAATTCGAT
CACTGTGCTAGTGTTGATGGTAGTGGGCTAG
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