Gchil6258.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6258.t1
Unique NameGchil6258.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length589
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004388_piloncontigtig00004388_pilon:186683..188449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6258Gchil6258Gracilaria chilensis NLEC103_M9 malegenetig00004388_pilon 186683..188449 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6258.t1.start1Gchil6258.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004388_pilon 186683..186685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6258.t1.CDS1Gchil6258.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004388_pilon 186683..188449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6258.t1.exon1Gchil6258.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004388_pilon 186683..188449 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6258.t1.stop1Gchil6258.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004388_pilon 188447..188449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6258.t1Gchil6258.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004388_pilon 186683..188449 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6258.t1 ID=Gchil6258.t1|Name=Gchil6258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=589bp
MQHQSAWVVTEPEPAPIFPSFDAATLVPPPLHHHHHFNDIPSPTTTIVTA
SSPISSPPRRSVHTAEQLWQLQQLLSPSPSPTVRTKPVDALGPSCLIALY
FTTLTRTLLRNRAVPIRARLSFLSPQLHYKFTQLINGKWKNVPTVQLPYA
SLCQAGNWLTARIGLQHPNFKNAKDTLQSTLTHAWQTRNWMCVVNLLGEG
DPAMADLLECDAIAGKPLATPPQFLDRLNCHKGAPDIRCDVDGALLARQA
LNDVLEMLGYKAASVSAGMFRRVVSPAWKQRCAYAASHSRPNCCPFYEGG
YFKKLMSHSQLYGDSAAFSVQEVLEGLDEVIKLWNNPGGMCVREAKCAAG
LRYNVDKSFQSGVRSYVKARFLREAPSAIDHLRVQEQHTYQSVKNLLRIK
RAKHFRCREQLDMIEATVDDIVPRFTATLGATMQPSDLDFQPFTPQPQTP
PPPPLPPPSASSEPLHFHGSVTVPLQPIYPCEDAIGMVASQALGVAAVKK
RKRPEFEQGLCPTTPREQKRKHAHLSLKRKEAAETALRQFLEERRGVCAQ
LQDLLNRTEQHGECCNCPDIGDLAAPGEFPTSANTPVA*
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spliced messenger RNA

>Gchil6258.t1 ID=Gchil6258.t1|Name=Gchil6258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00004388_pilon:186683..188449+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCATCAGTCTGCTTGGGTCGTCACCGAGCCCGAGCCCGCTCCCAT
TTTCCCCTCTTTTGATGCCGCCACACTTGTTCCACCCCCTCTCCATCACC
ACCATCACTTCAATGACATACCTAGCCCCACCACTACTATTGTCACCGCC
TCATCCCCAATCTCCTCCCCTCCCCGTCGCTCTGTCCACACCGCAGAACA
GTTGTGGCAGTTGCAACAGCTGCTCAGTCCCAGCCCTTCACCAACTGTGC
GCACCAAGCCAGTTGATGCCTTGGGTCCATCATGCCTCATTGCTCTGTAC
TTCACCACTCTCACCCGAACCTTATTGAGGAACCGAGCCGTCCCTATTCG
CGCACGCCTCTCCTTCCTGTCTCCGCAGCTGCACTACAAGTTCACCCAGC
TCATCAACGGGAAATGGAAAAACGTCCCCACTGTCCAGTTGCCCTACGCG
TCCCTGTGCCAGGCCGGCAACTGGTTAACGGCCCGCATCGGCTTGCAGCA
CCCCAATTTTAAGAACGCAAAGGACACCCTCCAATCCACCTTGACCCACG
CTTGGCAGACCCGCAACTGGATGTGTGTCGTTAATTTGTTAGGGGAAGGA
GATCCGGCCATGGCCGACTTGCTTGAGTGTGATGCCATCGCCGGTAAACC
GCTCGCCACTCCTCCTCAGTTCCTGGACCGTCTCAACTGTCACAAAGGCG
CCCCAGATATCCGTTGCGATGTTGATGGAGCCCTCTTGGCCCGTCAAGCG
CTCAATGACGTTTTGGAAATGCTGGGATACAAGGCCGCGTCTGTTAGTGC
GGGCATGTTTCGCCGCGTCGTATCCCCGGCCTGGAAGCAGCGTTGTGCCT
ATGCTGCTTCCCACTCCCGTCCAAATTGTTGCCCCTTCTATGAGGGAGGC
TACTTCAAGAAACTCATGTCGCATTCACAACTGTATGGCGATTCGGCCGC
CTTTTCTGTTCAAGAGGTTCTTGAGGGGCTTGATGAGGTGATCAAGCTAT
GGAACAACCCTGGTGGAATGTGTGTTCGTGAGGCTAAATGTGCGGCTGGT
CTTCGTTACAACGTCGATAAGAGTTTTCAGTCTGGAGTCAGGAGCTACGT
GAAGGCACGATTTCTCAGAGAGGCTCCATCTGCCATTGATCACTTGCGTG
TGCAGGAACAGCATACCTACCAGAGTGTCAAGAATTTACTGCGAATCAAA
CGCGCAAAGCATTTTAGGTGCCGAGAACAGTTGGACATGATCGAAGCGAC
AGTGGACGATATTGTTCCTCGTTTCACTGCCACTTTAGGTGCCACAATGC
AACCATCGGACTTGGACTTTCAACCGTTCAcaccacaacctcaaacaccg
ccgccaccaccattgccgccaccaTCCGCATCGTCCGAACCATTGCATTT
TCATGGATCTGTTACGGTTCCTTTACAACCAATCTACCCCTGTGAAGATG
CAATAGGAATGGTGGCCTCACAAGCCCTCGGTGTTGCCGCTGTAAAGAAG
CGCAAGCGCCCAGAGTTTGAACAGGGGTTATGCCCAACTACGCCTCGTGA
ACAGAAGAGGAAACATGCACACTTGTCACTGAAGCGCAAAGAAGCCGCTG
AGACAGCTTTGCGTCAGTTCTTAGAAGAACGTCGAGGGGTTTGCGCTCAG
CTACAAGATCTACTGAACCGCACTGAGCAACATGGGGAATGCTGCAACTG
TCCTGACATTGGTGATCTTGCGGCACCTGGTGAATTCCCCACTTCTGCAA
ATACACCTGTTGCCTGA
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protein sequence of Gchil6258.t1

>Gchil6258.t1 ID=Gchil6258.t1|Name=Gchil6258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=589bp
MQHQSAWVVTEPEPAPIFPSFDAATLVPPPLHHHHHFNDIPSPTTTIVTA
SSPISSPPRRSVHTAEQLWQLQQLLSPSPSPTVRTKPVDALGPSCLIALY
FTTLTRTLLRNRAVPIRARLSFLSPQLHYKFTQLINGKWKNVPTVQLPYA
SLCQAGNWLTARIGLQHPNFKNAKDTLQSTLTHAWQTRNWMCVVNLLGEG
DPAMADLLECDAIAGKPLATPPQFLDRLNCHKGAPDIRCDVDGALLARQA
LNDVLEMLGYKAASVSAGMFRRVVSPAWKQRCAYAASHSRPNCCPFYEGG
YFKKLMSHSQLYGDSAAFSVQEVLEGLDEVIKLWNNPGGMCVREAKCAAG
LRYNVDKSFQSGVRSYVKARFLREAPSAIDHLRVQEQHTYQSVKNLLRIK
RAKHFRCREQLDMIEATVDDIVPRFTATLGATMQPSDLDFQPFTPQPQTP
PPPPLPPPSASSEPLHFHGSVTVPLQPIYPCEDAIGMVASQALGVAAVKK
RKRPEFEQGLCPTTPREQKRKHAHLSLKRKEAAETALRQFLEERRGVCAQ
LQDLLNRTEQHGECCNCPDIGDLAAPGEFPTSANTPVA*
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mRNA from alignment at tig00004388_pilon:186683..188449+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6258.t1 ID=Gchil6258.t1|Name=Gchil6258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at tig00004388_pilon:186683..188449+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCATCAGTCTGCTTGGGTCGTCACCGAGCCCGAGCCCGCTCCCAT
TTTCCCCTCTTTTGATGCCGCCACACTTGTTCCACCCCCTCTCCATCACC
ACCATCACTTCAATGACATACCTAGCCCCACCACTACTATTGTCACCGCC
TCATCCCCAATCTCCTCCCCTCCCCGTCGCTCTGTCCACACCGCAGAACA
GTTGTGGCAGTTGCAACAGCTGCTCAGTCCCAGCCCTTCACCAACTGTGC
GCACCAAGCCAGTTGATGCCTTGGGTCCATCATGCCTCATTGCTCTGTAC
TTCACCACTCTCACCCGAACCTTATTGAGGAACCGAGCCGTCCCTATTCG
CGCACGCCTCTCCTTCCTGTCTCCGCAGCTGCACTACAAGTTCACCCAGC
TCATCAACGGGAAATGGAAAAACGTCCCCACTGTCCAGTTGCCCTACGCG
TCCCTGTGCCAGGCCGGCAACTGGTTAACGGCCCGCATCGGCTTGCAGCA
CCCCAATTTTAAGAACGCAAAGGACACCCTCCAATCCACCTTGACCCACG
CTTGGCAGACCCGCAACTGGATGTGTGTCGTTAATTTGTTAGGGGAAGGA
GATCCGGCCATGGCCGACTTGCTTGAGTGTGATGCCATCGCCGGTAAACC
GCTCGCCACTCCTCCTCAGTTCCTGGACCGTCTCAACTGTCACAAAGGCG
CCCCAGATATCCGTTGCGATGTTGATGGAGCCCTCTTGGCCCGTCAAGCG
CTCAATGACGTTTTGGAAATGCTGGGATACAAGGCCGCGTCTGTTAGTGC
GGGCATGTTTCGCCGCGTCGTATCCCCGGCCTGGAAGCAGCGTTGTGCCT
ATGCTGCTTCCCACTCCCGTCCAAATTGTTGCCCCTTCTATGAGGGAGGC
TACTTCAAGAAACTCATGTCGCATTCACAACTGTATGGCGATTCGGCCGC
CTTTTCTGTTCAAGAGGTTCTTGAGGGGCTTGATGAGGTGATCAAGCTAT
GGAACAACCCTGGTGGAATGTGTGTTCGTGAGGCTAAATGTGCGGCTGGT
CTTCGTTACAACGTCGATAAGAGTTTTCAGTCTGGAGTCAGGAGCTACGT
GAAGGCACGATTTCTCAGAGAGGCTCCATCTGCCATTGATCACTTGCGTG
TGCAGGAACAGCATACCTACCAGAGTGTCAAGAATTTACTGCGAATCAAA
CGCGCAAAGCATTTTAGGTGCCGAGAACAGTTGGACATGATCGAAGCGAC
AGTGGACGATATTGTTCCTCGTTTCACTGCCACTTTAGGTGCCACAATGC
AACCATCGGACTTGGACTTTCAACCGTTCAcaccacaacctcaaacaccg
ccgccaccaccattgccgccaccaTCCGCATCGTCCGAACCATTGCATTT
TCATGGATCTGTTACGGTTCCTTTACAACCAATCTACCCCTGTGAAGATG
CAATAGGAATGGTGGCCTCACAAGCCCTCGGTGTTGCCGCTGTAAAGAAG
CGCAAGCGCCCAGAGTTTGAACAGGGGTTATGCCCAACTACGCCTCGTGA
ACAGAAGAGGAAACATGCACACTTGTCACTGAAGCGCAAAGAAGCCGCTG
AGACAGCTTTGCGTCAGTTCTTAGAAGAACGTCGAGGGGTTTGCGCTCAG
CTACAAGATCTACTGAACCGCACTGAGCAACATGGGGAATGCTGCAACTG
TCCTGACATTGGTGATCTTGCGGCACCTGGTGAATTCCCCACTTCTGCAA
ATACACCTGTTGCCTGA
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Coding sequence (CDS) from alignment at tig00004388_pilon:186683..188449+

>Gchil6258.t1 ID=Gchil6258.t1|Name=Gchil6258.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1767bp|location=Sequence derived from alignment at tig00004388_pilon:186683..188449+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCATCAGTCTGCTTGGGTCGTCACCGAGCCCGAGCCCGCTCCCAT
TTTCCCCTCTTTTGATGCCGCCACACTTGTTCCACCCCCTCTCCATCACC
ACCATCACTTCAATGACATACCTAGCCCCACCACTACTATTGTCACCGCC
TCATCCCCAATCTCCTCCCCTCCCCGTCGCTCTGTCCACACCGCAGAACA
GTTGTGGCAGTTGCAACAGCTGCTCAGTCCCAGCCCTTCACCAACTGTGC
GCACCAAGCCAGTTGATGCCTTGGGTCCATCATGCCTCATTGCTCTGTAC
TTCACCACTCTCACCCGAACCTTATTGAGGAACCGAGCCGTCCCTATTCG
CGCACGCCTCTCCTTCCTGTCTCCGCAGCTGCACTACAAGTTCACCCAGC
TCATCAACGGGAAATGGAAAAACGTCCCCACTGTCCAGTTGCCCTACGCG
TCCCTGTGCCAGGCCGGCAACTGGTTAACGGCCCGCATCGGCTTGCAGCA
CCCCAATTTTAAGAACGCAAAGGACACCCTCCAATCCACCTTGACCCACG
CTTGGCAGACCCGCAACTGGATGTGTGTCGTTAATTTGTTAGGGGAAGGA
GATCCGGCCATGGCCGACTTGCTTGAGTGTGATGCCATCGCCGGTAAACC
GCTCGCCACTCCTCCTCAGTTCCTGGACCGTCTCAACTGTCACAAAGGCG
CCCCAGATATCCGTTGCGATGTTGATGGAGCCCTCTTGGCCCGTCAAGCG
CTCAATGACGTTTTGGAAATGCTGGGATACAAGGCCGCGTCTGTTAGTGC
GGGCATGTTTCGCCGCGTCGTATCCCCGGCCTGGAAGCAGCGTTGTGCCT
ATGCTGCTTCCCACTCCCGTCCAAATTGTTGCCCCTTCTATGAGGGAGGC
TACTTCAAGAAACTCATGTCGCATTCACAACTGTATGGCGATTCGGCCGC
CTTTTCTGTTCAAGAGGTTCTTGAGGGGCTTGATGAGGTGATCAAGCTAT
GGAACAACCCTGGTGGAATGTGTGTTCGTGAGGCTAAATGTGCGGCTGGT
CTTCGTTACAACGTCGATAAGAGTTTTCAGTCTGGAGTCAGGAGCTACGT
GAAGGCACGATTTCTCAGAGAGGCTCCATCTGCCATTGATCACTTGCGTG
TGCAGGAACAGCATACCTACCAGAGTGTCAAGAATTTACTGCGAATCAAA
CGCGCAAAGCATTTTAGGTGCCGAGAACAGTTGGACATGATCGAAGCGAC
AGTGGACGATATTGTTCCTCGTTTCACTGCCACTTTAGGTGCCACAATGC
AACCATCGGACTTGGACTTTCAACCGTTCAcaccacaacctcaaacaccg
ccgccaccaccattgccgccaccaTCCGCATCGTCCGAACCATTGCATTT
TCATGGATCTGTTACGGTTCCTTTACAACCAATCTACCCCTGTGAAGATG
CAATAGGAATGGTGGCCTCACAAGCCCTCGGTGTTGCCGCTGTAAAGAAG
CGCAAGCGCCCAGAGTTTGAACAGGGGTTATGCCCAACTACGCCTCGTGA
ACAGAAGAGGAAACATGCACACTTGTCACTGAAGCGCAAAGAAGCCGCTG
AGACAGCTTTGCGTCAGTTCTTAGAAGAACGTCGAGGGGTTTGCGCTCAG
CTACAAGATCTACTGAACCGCACTGAGCAACATGGGGAATGCTGCAACTG
TCCTGACATTGGTGATCTTGCGGCACCTGGTGAATTCCCCACTTCTGCAA
ATACACCTGTTGCCTGA
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