Gchil618.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil618.t1
Unique NameGchil618.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:637135..637713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil618Gchil618Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 637135..637713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil618.t1.stop1Gchil618.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 637135..637137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil618.t1.CDS1Gchil618.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 637135..637713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil618.t1.exon1Gchil618.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 637135..637713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil618.t1.start1Gchil618.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 637711..637713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil618.t1Gchil618.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 637135..637713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil618.t1 ID=Gchil618.t1|Name=Gchil618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=193bp
MLAKGPVSSQCSPLAPPSFLQTPSFPIKPKISAPSPRFEFLTCVVDTSTS
PLVPRSVTICSTSNTTANQTLATKSPSSKILQPKSAIDKAAERRRKNRES
SSRCYYNRKRIIQNLETQLLAEKDKLTKLYDRALELRHDNARLKKEVVTN
GYALPASSTKHAYQRSSSTFSIRDYLRLLHDSTYQNPSQTLL*
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spliced messenger RNA

>Gchil618.t1 ID=Gchil618.t1|Name=Gchil618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00004380_pilon:637135..637713- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCAAAGGGGCCCGTCTCCTCGCAGTGTTCGCCGCTTGCCCCTCC
GTCGTTTCTTCAAACCCCGTCCTTCCCAATCAAGCCTAAAATTTCGGCTC
CTTCCCCGAGATTTGAGTTTCTTACTTGCGTTGTTGATACGTCCACTTCG
CCGTTGGTACCACGTTCCGTCACTATCTGCAGCACGAGCAACACAACCGC
AAACCAGACACTCGCCACGAAGAGCCCATCGAGCAAGATACTCCAGCCCA
AGTCCGCCATCGACAAGGCCGCAGAACGTCGGAGAAAGAATCGCGAAAGC
TCAAGTCGTTGCTACTACAACCGGAAACGTATTATTCAAAACTTGGAGAC
TCAATTGCTTGCAGAGAAGGATAAGCTTACCAAATTATATGATCGTGCTT
TGGAGCTTCGTCACGACAATGCACGTCTCAAGAAAGAAGTTGTTACCAAT
GGATACGCTTTACCCGCCTCTAGCACGAAACATGCGTACCAAAGGTCTAG
TAGTACGTTCTCTATTAGGGATTATTTGCGACTTCTTCACGACTCAACGT
ATCAAAACCCGTCGCAAACGCTACTGTAA
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protein sequence of Gchil618.t1

>Gchil618.t1 ID=Gchil618.t1|Name=Gchil618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=193bp
MLAKGPVSSQCSPLAPPSFLQTPSFPIKPKISAPSPRFEFLTCVVDTSTS
PLVPRSVTICSTSNTTANQTLATKSPSSKILQPKSAIDKAAERRRKNRES
SSRCYYNRKRIIQNLETQLLAEKDKLTKLYDRALELRHDNARLKKEVVTN
GYALPASSTKHAYQRSSSTFSIRDYLRLLHDSTYQNPSQTLL*
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mRNA from alignment at tig00004380_pilon:637135..637713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil618.t1 ID=Gchil618.t1|Name=Gchil618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00004380_pilon:637135..637713- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGCAAAGGGGCCCGTCTCCTCGCAGTGTTCGCCGCTTGCCCCTCC
GTCGTTTCTTCAAACCCCGTCCTTCCCAATCAAGCCTAAAATTTCGGCTC
CTTCCCCGAGATTTGAGTTTCTTACTTGCGTTGTTGATACGTCCACTTCG
CCGTTGGTACCACGTTCCGTCACTATCTGCAGCACGAGCAACACAACCGC
AAACCAGACACTCGCCACGAAGAGCCCATCGAGCAAGATACTCCAGCCCA
AGTCCGCCATCGACAAGGCCGCAGAACGTCGGAGAAAGAATCGCGAAAGC
TCAAGTCGTTGCTACTACAACCGGAAACGTATTATTCAAAACTTGGAGAC
TCAATTGCTTGCAGAGAAGGATAAGCTTACCAAATTATATGATCGTGCTT
TGGAGCTTCGTCACGACAATGCACGTCTCAAGAAAGAAGTTGTTACCAAT
GGATACGCTTTACCCGCCTCTAGCACGAAACATGCGTACCAAAGGTCTAG
TAGTACGTTCTCTATTAGGGATTATTTGCGACTTCTTCACGACTCAACGT
ATCAAAACCCGTCGCAAACGCTACTGTAA
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Coding sequence (CDS) from alignment at tig00004380_pilon:637135..637713-

>Gchil618.t1 ID=Gchil618.t1|Name=Gchil618.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00004380_pilon:637135..637713- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCGCAAAGGGGCCCGTCTCCTCGCAGTGTTCGCCGCTTGCCCCTCC
GTCGTTTCTTCAAACCCCGTCCTTCCCAATCAAGCCTAAAATTTCGGCTC
CTTCCCCGAGATTTGAGTTTCTTACTTGCGTTGTTGATACGTCCACTTCG
CCGTTGGTACCACGTTCCGTCACTATCTGCAGCACGAGCAACACAACCGC
AAACCAGACACTCGCCACGAAGAGCCCATCGAGCAAGATACTCCAGCCCA
AGTCCGCCATCGACAAGGCCGCAGAACGTCGGAGAAAGAATCGCGAAAGC
TCAAGTCGTTGCTACTACAACCGGAAACGTATTATTCAAAACTTGGAGAC
TCAATTGCTTGCAGAGAAGGATAAGCTTACCAAATTATATGATCGTGCTT
TGGAGCTTCGTCACGACAATGCACGTCTCAAGAAAGAAGTTGTTACCAAT
GGATACGCTTTACCCGCCTCTAGCACGAAACATGCGTACCAAAGGTCTAG
TAGTACGTTCTCTATTAGGGATTATTTGCGACTTCTTCACGACTCAACGT
ATCAAAACCCGTCGCAAACGCTACTGTAA
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