Gchil615.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil615.t1
Unique NameGchil615.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:626496..627497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX48815
Max annot lvl2759|Eukaryota
Evalue6.04e-23
EggNOG OGs2D5IG@1|root,2S54Z@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil615Gchil615Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 626496..627497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1Gchil615.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 626496..627497 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1.start1Gchil615.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 626496..626498 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1.CDS1Gchil615.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 626496..626777 +
Gchil615.t1.CDS2Gchil615.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 626904..627497 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1.exon1Gchil615.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 626496..626777 +
Gchil615.t1.exon2Gchil615.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 626904..627497 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1.intron1Gchil615.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 626778..626903 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil615.t1.stop1Gchil615.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 627495..627497 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil615.t1 ID=Gchil615.t1|Name=Gchil615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=292bp
MRWAVAVLGGSMYSIDQAPRAEAVYNPFGPPPDLVMRLKQRTPEEMAERL
FQEDLHYPEFFAGKWKSISTLLSVACPAGYKLFGRTGAFEEAKKGIGEKL
QYESRFVRSSGYVIADRAFNVTAIARATLGPKSVLQCNTLGNNVNRLAIT
LRPDESEGSVYDVELKTIARHQQRDKIPINIDAAFRIREQSGWEKVEARD
DHEFREGEKEGLYTTEVVRQDVRLSTDDLRIQPLIKHVETSAIYGWDRDR
DDCFWAWQKTSTYLTKSNLTYVDARGRPVDVRWYKLFYTRA*
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spliced messenger RNA

>Gchil615.t1 ID=Gchil615.t1|Name=Gchil615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00004380_pilon:626496..627497+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTGGGCAGTAGCGGTGCTTGGAGGTAGCATGTACTCCATTGACCA
AGCTCCACGAGCCGAAGCCGTATATAATCCATTTGGACCCCCTCCAGACC
TTGTAATGCGATTGAAACAGAGGACACCGGAAGAGATGGCAGAACGACTG
TTTCAAGAAGACTTGCACTACCCAGAATTTTTTGCTGGGAAATGGAAAAG
CATTTCGACGCTTTTGTCTGTCGCATGTCCCGCCGGATATAAATTGTTCG
GCCGAACTGGTGCGTTCGAAGAAGCGAAAAAGGGAATTGGAGAAAAACTG
CAGTATGAGAGTCGATTTGTACGATCTAGTGGGTATGTAATTGCGGACAG
GGCATTCAATGTCACGGCGATAGCACGTGCGACGCTGGGACCGAAATCTG
TATTGCAATGTAATACGTTGGGAAATAATGTCAATCGACTTGCGATCACA
TTAAGACCGGATGAAAGCGAGGGGTCGGTTTACGACGTGGAATTAAAAAC
GATCGCCAGACATCAGCAGCGGGATAAAATCCCGATAAACATTGACGCTG
CCTTCAGGATTCGTGAGCAATCTGGTTGGGAAAAAGTTGAGGCAAGAGAC
GATCATGAGTTTCGAGAGGGAGAGAAAGAGGGACTGTATACGACTGAAGT
TGTTCGCCAAGATGTGCGGCTTAGTACGGATGATTTGCGTATTCAACCGC
TTATAAAGCATGTCGAAACGTCTGCTATATACGGTTGGGATCGCGATAGA
GACGATTGTTTTTGGGCTTGGCAGAAGACAAGCACTTACCTCACGAAGTC
AAATTTGACGTATGTCGATGCACGAGGCAGGCCGGTGGATGTGCGGTGGT
ACAAGTTGTTCTATACTCGCGCCTGA
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protein sequence of Gchil615.t1

>Gchil615.t1 ID=Gchil615.t1|Name=Gchil615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=292bp
MRWAVAVLGGSMYSIDQAPRAEAVYNPFGPPPDLVMRLKQRTPEEMAERL
FQEDLHYPEFFAGKWKSISTLLSVACPAGYKLFGRTGAFEEAKKGIGEKL
QYESRFVRSSGYVIADRAFNVTAIARATLGPKSVLQCNTLGNNVNRLAIT
LRPDESEGSVYDVELKTIARHQQRDKIPINIDAAFRIREQSGWEKVEARD
DHEFREGEKEGLYTTEVVRQDVRLSTDDLRIQPLIKHVETSAIYGWDRDR
DDCFWAWQKTSTYLTKSNLTYVDARGRPVDVRWYKLFYTRA*
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mRNA from alignment at tig00004380_pilon:626496..627497+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil615.t1 ID=Gchil615.t1|Name=Gchil615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00004380_pilon:626496..627497+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGGGCAGTAGCGGTGCTTGGAGGTAGCATGTACTCCATTGACCA
AGCTCCACGAGCCGAAGCCGTATATAATCCATTTGGACCCCCTCCAGACC
TTGTAATGCGATTGAAACAGAGGACACCGGAAGAGATGGCAGAACGACTG
TTTCAAGAAGACTTGCACTACCCAGAATTTTTTGCTGGGAAATGGAAAAG
CATTTCGACGCTTTTGTCTGTCGCATGTCCCGCCGGATATAAATTGTTCG
GCCGAACTGGTGCGTTCGAAGAAGCGAAAAAGGTATGTGGTTGTTTAGAA
TTAGATGAAATGTAATGTCCAAAAACCGGGCGCAGAGATGAATCGCTTTG
AAACGCGGCGAGGGGCTGACCCTTTACTGCGGACATGTTTTACGGGGCAT
GCGTACAGGGAATTGGAGAAAAACTGCAGTATGAGAGTCGATTTGTACGA
TCTAGTGGGTATGTAATTGCGGACAGGGCATTCAATGTCACGGCGATAGC
ACGTGCGACGCTGGGACCGAAATCTGTATTGCAATGTAATACGTTGGGAA
ATAATGTCAATCGACTTGCGATCACATTAAGACCGGATGAAAGCGAGGGG
TCGGTTTACGACGTGGAATTAAAAACGATCGCCAGACATCAGCAGCGGGA
TAAAATCCCGATAAACATTGACGCTGCCTTCAGGATTCGTGAGCAATCTG
GTTGGGAAAAAGTTGAGGCAAGAGACGATCATGAGTTTCGAGAGGGAGAG
AAAGAGGGACTGTATACGACTGAAGTTGTTCGCCAAGATGTGCGGCTTAG
TACGGATGATTTGCGTATTCAACCGCTTATAAAGCATGTCGAAACGTCTG
CTATATACGGTTGGGATCGCGATAGAGACGATTGTTTTTGGGCTTGGCAG
AAGACAAGCACTTACCTCACGAAGTCAAATTTGACGTATGTCGATGCACG
AGGCAGGCCGGTGGATGTGCGGTGGTACAAGTTGTTCTATACTCGCGCCT
GA
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Coding sequence (CDS) from alignment at tig00004380_pilon:626496..627497+

>Gchil615.t1 ID=Gchil615.t1|Name=Gchil615.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00004380_pilon:626496..627497+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTTGGGCAGTAGCGGTGCTTGGAGGTAGCATGTACTCCATTGACCA
AGCTCCACGAGCCGAAGCCGTATATAATCCATTTGGACCCCCTCCAGACC
TTGTAATGCGATTGAAACAGAGGACACCGGAAGAGATGGCAGAACGACTG
TTTCAAGAAGACTTGCACTACCCAGAATTTTTTGCTGGGAAATGGAAAAG
CATTTCGACGCTTTTGTCTGTCGCATGTCCCGCCGGATATAAATTGTTCG
GCCGAACTGGTGCGTTCGAAGAAGCGAAAAAGGGAATTGGAGAAAAACTG
CAGTATGAGAGTCGATTTGTACGATCTAGTGGGTATGTAATTGCGGACAG
GGCATTCAATGTCACGGCGATAGCACGTGCGACGCTGGGACCGAAATCTG
TATTGCAATGTAATACGTTGGGAAATAATGTCAATCGACTTGCGATCACA
TTAAGACCGGATGAAAGCGAGGGGTCGGTTTACGACGTGGAATTAAAAAC
GATCGCCAGACATCAGCAGCGGGATAAAATCCCGATAAACATTGACGCTG
CCTTCAGGATTCGTGAGCAATCTGGTTGGGAAAAAGTTGAGGCAAGAGAC
GATCATGAGTTTCGAGAGGGAGAGAAAGAGGGACTGTATACGACTGAAGT
TGTTCGCCAAGATGTGCGGCTTAGTACGGATGATTTGCGTATTCAACCGC
TTATAAAGCATGTCGAAACGTCTGCTATATACGGTTGGGATCGCGATAGA
GACGATTGTTTTTGGGCTTGGCAGAAGACAAGCACTTACCTCACGAAGTC
AAATTTGACGTATGTCGATGCACGAGGCAGGCCGGTGGATGTGCGGTGGT
ACAAGTTGTTCTATACTCGCGCCTGA
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