Gchil611.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil611.t1
Unique Name	Gchil611.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	316

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:617577..618524 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S131_197V6.1
PFAMs	UPF0016
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Evalue	5.77e-62
EggNOG OGs	COG2119@1\|root,KOG2881@2759\|Eukaryota,37S20@33090\|Viridiplantae,3G7D7@35493\|Streptophyta
Description	GDT1-like protein 2
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil611	Gchil611	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 617577..618524 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil611.t1.start1	Gchil611.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 617577..617579 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil611.t1.CDS1	Gchil611.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 617577..618524 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil611.t1.exon1	Gchil611.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 617577..618524 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil611.t1.stop1	Gchil611.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 618522..618524 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil611.t1	Gchil611.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 617577..618524 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:617577..618524+
coding sequence from alignment at tig00004380_pilon:617577..618524+

mRNA sequence

>Gchil611.t1 ID=Gchil611.t1|Name=Gchil611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=316bp
MNPTAFVSGVARGLTPYRSGSSTCKRRLQIIPRRDVRCSTPQPVQPPPEP
STLENKSSSPPLRRMLSARRLVPVAFLALSRAAPALAALGNGNAYFPNPL
VAPLDPASFLSGLTASFALVLASEIGDKTFFISALLSMKHSRILVFLGTV
LALAAMTVISVLIGQLFHALPPSLNTSIPFDDYAAVALLLWFGFQSIRSG
LSMSSADDEELQDAKDVVAGRGGISGGGLKIVAQTTSLIFLAEWGDKSML
ATVALAAAKSPWGVIVGGISGHFVATIIAVVGGSFLGNFLSERNARLIGG
VLFFVFALLTIFGIY*

spliced messenger RNA

>Gchil611.t1 ID=Gchil611.t1|Name=Gchil611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004380_pilon:617577..618524+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTACAGCGTTTGTTTCTGGGGTTGCCCGAGGACTCACTCCCTA
TCGTTCTGGCTCTTCGACATGCAAACGGCGTCTTCAGATAATACCTCGGC
GAGATGTGCGATGTTCCACTCCACAGCCCGTGCAACCACCACCAGAACCA
TCGACATTGGAAAACAAATCAAGCTCTCCCCCGCTTAGACGCATGCTATC
GGCACGAAGGCTCGTGCCAGTTGCTTTCCTGGCTCTTTCCCGGGCTGCCC
CAGCATTGGCAGCGCTCGGCAACGGAAATGCATACTTTCCAAACCCTCTT
GTTGCCCCACTGGACCCAGCGTCCTTCTTATCTGGTCTCACTGCCTCTTT
TGCTCTTGTGCTCGCTTCTGAAATTGGAGACAAGACGTTTTTCATATCAG
CGTTGCTTTCAATGAAACATTCGCGCATCCTCGTTTTTCTCGGCACAGTA
CTCGCGCTCGCAGCCATGACAGTTATCTCAGTTCTGATCGGGCAACTCTT
TCATGCGCTACCACCTAGTCTAAATACATCGATCCCATTCGACGATTACG
CAGCTGTGGCTCTGTTGCTGTGGTTCGGCTTCCAATCGATCAGATCAGGA
CTTTCCATGTCTTCCGCCGATGATGAAGAACTGCAAGACGCCAAGGATGT
GGTAGCTGGACGAGGCGGAATCAGCGGAGGTGGCTTAAAAATTGTTGCAC
AAACAACAAGCCTCATATTTCTTGCGGAATGGGGCGATAAGAGCATGCTT
GCCACAGTGGCCTTGGCAGCAGCGAAAAGTCCATGGGGCGTGATAGTCGG
AGGAATTTCGGGTCATTTCGTTGCAACAATAATTGCCGTGGTGGGTGGCA
GCTTCCTAGGAAACTTTCTCTCAGAAAGAAATGCCAGACTGATAGGGGGT
GTACTGTTCTTTGTCTTTGCTTTGTTGACCATTTTTGGTATATACTAG

protein sequence of Gchil611.t1

>Gchil611.t1 ID=Gchil611.t1|Name=Gchil611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=316bp
MNPTAFVSGVARGLTPYRSGSSTCKRRLQIIPRRDVRCSTPQPVQPPPEP
STLENKSSSPPLRRMLSARRLVPVAFLALSRAAPALAALGNGNAYFPNPL
VAPLDPASFLSGLTASFALVLASEIGDKTFFISALLSMKHSRILVFLGTV
LALAAMTVISVLIGQLFHALPPSLNTSIPFDDYAAVALLLWFGFQSIRSG
LSMSSADDEELQDAKDVVAGRGGISGGGLKIVAQTTSLIFLAEWGDKSML
ATVALAAAKSPWGVIVGGISGHFVATIIAVVGGSFLGNFLSERNARLIGG
VLFFVFALLTIFGIY*

mRNA from alignment at tig00004380_pilon:617577..618524+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil611.t1 ID=Gchil611.t1|Name=Gchil611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00004380_pilon:617577..618524+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTACAGCGTTTGTTTCTGGGGTTGCCCGAGGACTCACTCCCTA
TCGTTCTGGCTCTTCGACATGCAAACGGCGTCTTCAGATAATACCTCGGC
GAGATGTGCGATGTTCCACTCCACAGCCCGTGCAACCACCACCAGAACCA
TCGACATTGGAAAACAAATCAAGCTCTCCCCCGCTTAGACGCATGCTATC
GGCACGAAGGCTCGTGCCAGTTGCTTTCCTGGCTCTTTCCCGGGCTGCCC
CAGCATTGGCAGCGCTCGGCAACGGAAATGCATACTTTCCAAACCCTCTT
GTTGCCCCACTGGACCCAGCGTCCTTCTTATCTGGTCTCACTGCCTCTTT
TGCTCTTGTGCTCGCTTCTGAAATTGGAGACAAGACGTTTTTCATATCAG
CGTTGCTTTCAATGAAACATTCGCGCATCCTCGTTTTTCTCGGCACAGTA
CTCGCGCTCGCAGCCATGACAGTTATCTCAGTTCTGATCGGGCAACTCTT
TCATGCGCTACCACCTAGTCTAAATACATCGATCCCATTCGACGATTACG
CAGCTGTGGCTCTGTTGCTGTGGTTCGGCTTCCAATCGATCAGATCAGGA
CTTTCCATGTCTTCCGCCGATGATGAAGAACTGCAAGACGCCAAGGATGT
GGTAGCTGGACGAGGCGGAATCAGCGGAGGTGGCTTAAAAATTGTTGCAC
AAACAACAAGCCTCATATTTCTTGCGGAATGGGGCGATAAGAGCATGCTT
GCCACAGTGGCCTTGGCAGCAGCGAAAAGTCCATGGGGCGTGATAGTCGG
AGGAATTTCGGGTCATTTCGTTGCAACAATAATTGCCGTGGTGGGTGGCA
GCTTCCTAGGAAACTTTCTCTCAGAAAGAAATGCCAGACTGATAGGGGGT
GTACTGTTCTTTGTCTTTGCTTTGTTGACCATTTTTGGTATATACTAG

Coding sequence (CDS) from alignment at tig00004380_pilon:617577..618524+

>Gchil611.t1 ID=Gchil611.t1|Name=Gchil611.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00004380_pilon:617577..618524+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATCCTACAGCGTTTGTTTCTGGGGTTGCCCGAGGACTCACTCCCTA
TCGTTCTGGCTCTTCGACATGCAAACGGCGTCTTCAGATAATACCTCGGC
GAGATGTGCGATGTTCCACTCCACAGCCCGTGCAACCACCACCAGAACCA
TCGACATTGGAAAACAAATCAAGCTCTCCCCCGCTTAGACGCATGCTATC
GGCACGAAGGCTCGTGCCAGTTGCTTTCCTGGCTCTTTCCCGGGCTGCCC
CAGCATTGGCAGCGCTCGGCAACGGAAATGCATACTTTCCAAACCCTCTT
GTTGCCCCACTGGACCCAGCGTCCTTCTTATCTGGTCTCACTGCCTCTTT
TGCTCTTGTGCTCGCTTCTGAAATTGGAGACAAGACGTTTTTCATATCAG
CGTTGCTTTCAATGAAACATTCGCGCATCCTCGTTTTTCTCGGCACAGTA
CTCGCGCTCGCAGCCATGACAGTTATCTCAGTTCTGATCGGGCAACTCTT
TCATGCGCTACCACCTAGTCTAAATACATCGATCCCATTCGACGATTACG
CAGCTGTGGCTCTGTTGCTGTGGTTCGGCTTCCAATCGATCAGATCAGGA
CTTTCCATGTCTTCCGCCGATGATGAAGAACTGCAAGACGCCAAGGATGT
GGTAGCTGGACGAGGCGGAATCAGCGGAGGTGGCTTAAAAATTGTTGCAC
AAACAACAAGCCTCATATTTCTTGCGGAATGGGGCGATAAGAGCATGCTT
GCCACAGTGGCCTTGGCAGCAGCGAAAAGTCCATGGGGCGTGATAGTCGG
AGGAATTTCGGGTCATTTCGTTGCAACAATAATTGCCGTGGTGGGTGGCA
GCTTCCTAGGAAACTTTCTCTCAGAAAGAAATGCCAGACTGATAGGGGGT
GTACTGTTCTTTGTCTTTGCTTTGTTGACCATTTTTGGTATATACTAG