Gchil601.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil601.t1
Unique NameGchil601.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:561223..562416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil601Gchil601Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 561223..562416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1Gchil601.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 561223..562416 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1.stop1Gchil601.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 561223..561225 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1.CDS1Gchil601.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 561223..561365 -
Gchil601.t1.CDS2Gchil601.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 561554..561645 -
Gchil601.t1.CDS3Gchil601.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 562271..562416 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1.exon1Gchil601.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 561223..561365 -
Gchil601.t1.exon2Gchil601.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 561554..561645 -
Gchil601.t1.exon3Gchil601.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 562271..562416 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1.intron1Gchil601.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 561366..561553 -
Gchil601.t1.intron2Gchil601.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 561646..562270 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil601.t1.start1Gchil601.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 562414..562416 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil601.t1 ID=Gchil601.t1|Name=Gchil601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=127bp
MVGIGCEETVVRRLVGRGGSSRQLSGGRGEQEVGGVHLEGSGLTRDTLLK
VLALYRELLRAVRFYLSKKRDSLALAIREDIWEKRNITGKELEKALWDGH
MALERLQKWFPTSKQMSDGKDRGIKL*
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spliced messenger RNA

>Gchil601.t1 ID=Gchil601.t1|Name=Gchil601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00004380_pilon:561223..562416- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGAATCGGGTGTGAAGAAACGGTTGTTAGAAGGCTTGTCGGCAG
GGGAGGAAGCAGCCGCCAGCTTTCCGGTGGACGCGGCGAGCAGGAAGTTG
GCGGAGTTCACCTGGAGGGCAGCGGTCTTACCAGGGACACACTGCTAAAG
GTCTTGGCTTTGTATCGTGAGCTGTTGCGCGCTGTGCGTTTCTACCTTAG
CAAGAAGAGGGATTCACTGGCGTTAGCCATTAGAGAAGACATCTGGGAGA
AGCGAAACATCACAGGGAAAGAGCTTGAAAAAGCTTTGTGGGATGGCCAC
ATGGCGCTTGAGCGCTTGCAGAAATGGTTTCCAACCAGTAAACAAATGTC
GGACGGTAAAGATAGGGGCATAAAGCTGTAG
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protein sequence of Gchil601.t1

>Gchil601.t1 ID=Gchil601.t1|Name=Gchil601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=127bp
MVGIGCEETVVRRLVGRGGSSRQLSGGRGEQEVGGVHLEGSGLTRDTLLK
VLALYRELLRAVRFYLSKKRDSLALAIREDIWEKRNITGKELEKALWDGH
MALERLQKWFPTSKQMSDGKDRGIKL*
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mRNA from alignment at tig00004380_pilon:561223..562416-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil601.t1 ID=Gchil601.t1|Name=Gchil601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00004380_pilon:561223..562416- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGGAATCGGGTGTGAAGAAACGGTTGTTAGAAGGCTTGTCGGCAG
GGGAGGAAGCAGCCGCCAGCTTTCCGGTGGACGCGGCGAGCAGGAAGTTG
GCGGAGTTCACCTGGAGGGCAGCGGTCTTACCAGGGACACACTGCTGTGA
GTTTGAAGTGGATTAGGAGTCAGCAGATGTTCGAGGAAAGCGTGCCTTGG
AGCGAAGATTGTGGACGTGGTCTGAAAGGCCCATGTTGAGGAGGAGGGGG
TGGGGTGGGGTGGAGGGGACGGAAGTATCGTAGGGACTGGGAGAAGTGTT
GTAGCTCGGGCTGGGGGAGGGGTGGGAAAGAAGTAGCGGAAGCAATATTG
TTGAAGTGAACAGCAGCACGCGCTGGTGCGGAGCGTGCTGTTGCATAACT
TGGAACAATTGGTGGCACAGACGCGAGTTCCACCGGCGAAACATGTGCGT
CTCTTGGCGACCCTGTGGGAGTCGCGCAGGGAGGGTGGGGGGTCTCAAGT
TATCGCGCACACTGTATTTTTGGAGCTATGAGAAAAGTGCTCAAAGCGGG
GCGCGGGCAGCGTTCGTGCGTTGGGAGGGGGGAACATACTTGTTTGCGCT
GTCGGAACGCTTGCATCTGGCCTTCTAAAACCATATGCTTTGTTGCTGAC
GCTGGTTATCCCACCCCCTCCACAATTCTCGTTGGTAACGTCTTTTTGCG
CTTTAAGGCATAGTACCGGCACTATCGTGTTCTATTGGTGAGACAAAAAT
CACCCTGACCCTCTCGTCTAGAAAGGTCTTGGCTTTGTATCGTGAGCTGT
TGCGCGCTGTGCGTTTCTACCTTAGCAAGAAGAGGGATTCACTGGCGTTA
GCCATTAGAGAAGGTGCGTGCTATATAAACATGTTCGCTCCGCAATTTTC
CTTTTAACCCGCCTCTCCGCAGCCGACCACACCGCACCCCTTTCTGATCA
GAGCCGTGAACTTAGATCTCATGTAACTTTCTGTTTCCACACCAGCACAC
TAACTTCTAACCAACGCACCATACCGTTATCTTCTCCAAAAACTACCGCA
GACATCTGGGAGAAGCGAAACATCACAGGGAAAGAGCTTGAAAAAGCTTT
GTGGGATGGCCACATGGCGCTTGAGCGCTTGCAGAAATGGTTTCCAACCA
GTAAACAAATGTCGGACGGTAAAGATAGGGGCATAAAGCTGTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:561223..562416-

>Gchil601.t1 ID=Gchil601.t1|Name=Gchil601.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=381bp|location=Sequence derived from alignment at tig00004380_pilon:561223..562416- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGGAATCGGGTGTGAAGAAACGGTTGTTAGAAGGCTTGTCGGCAG
GGGAGGAAGCAGCCGCCAGCTTTCCGGTGGACGCGGCGAGCAGGAAGTTG
GCGGAGTTCACCTGGAGGGCAGCGGTCTTACCAGGGACACACTGCTAAAG
GTCTTGGCTTTGTATCGTGAGCTGTTGCGCGCTGTGCGTTTCTACCTTAG
CAAGAAGAGGGATTCACTGGCGTTAGCCATTAGAGAAGACATCTGGGAGA
AGCGAAACATCACAGGGAAAGAGCTTGAAAAAGCTTTGTGGGATGGCCAC
ATGGCGCTTGAGCGCTTGCAGAAATGGTTTCCAACCAGTAAACAAATGTC
GGACGGTAAAGATAGGGGCATAAAGCTGTAG
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