Gchil600.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil600.t1
Unique NameGchil600.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:559762..560507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil600Gchil600Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 559762..560507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1Gchil600.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 559762..560507 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1.start1Gchil600.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 559762..559764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1.CDS1Gchil600.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 559762..559883 +
Gchil600.t1.CDS2Gchil600.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 559958..560507 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1.exon1Gchil600.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 559762..559883 +
Gchil600.t1.exon2Gchil600.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 559958..560507 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1.intron1Gchil600.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 559884..559957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil600.t1.stop1Gchil600.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 560505..560507 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil600.t1 ID=Gchil600.t1|Name=Gchil600.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=224bp
MEEFEQKGSPLAAVRAFLAQQDVSSSENEEHPEKYIPLPARLGVGANPNQ
AVHAMITPGLSEASRRLGSALRRQAQAAGNDEAVVESSEGEDTESRARAI
STTHVRDQNPQGKEKEAIEKKSHAGGQNQKSERAVDLKSEEKDDSASDDE
WGDDVLRRMAGEQDVNFKSWSEGFAEGESTGVESNGYTNGFHGEKKCNID
VGLKRKKKKIRNRQKNVRRDKRK*
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spliced messenger RNA

>Gchil600.t1 ID=Gchil600.t1|Name=Gchil600.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00004380_pilon:559762..560507+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAATTCGAACAAAAGGGTAGTCCACTTGCTGCTGTCCGTGCTTT
TCTAGCACAGCAAGATGTTAGCTCTTCCGAAAATGAGGAACATCCCGAGA
AGTATATTCCTCTTCCAGCACGACTTGGAGTTGGGGCAAACCCCAATCAG
GCGGTACACGCGATGATCACGCCTGGACTAAGTGAGGCGAGCAGAAGACT
GGGAAGTGCGCTAAGGAGGCAGGCACAAGCTGCCGGAAACGATGAAGCTG
TCGTGGAGAGTAGCGAAGGTGAGGATACTGAATCCAGAGCAAGAGCAATT
TCTACAACGCACGTGAGAGATCAGAACCCACAAGGTAAGGAGAAGGAAGC
TATCGAAAAGAAATCTCATGCTGGGGGACAAAATCAAAAAAGCGAGCGAG
CCGTAGATTTAAAAAGCGAGGAAAAGGACGACTCTGCTAGTGACGATGAA
TGGGGAGACGATGTGCTTCGGCGCATGGCTGGAGAACAGGATGTGAATTT
TAAGAGTTGGTCTGAGGGTTTTGCTGAAGGAGAAAGCACAGGTGTAGAGT
CAAATGGTTACACGAACGGATTTCATGGGGAAAAGAAGTGCAACATAGAT
GTTGGGTTGAAGCGCAAGAAAAAGAAAATTAGGAATAGGCAGAAAAACGT
GCGGCGTGACAAGCGAAAGTGA
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protein sequence of Gchil600.t1

>Gchil600.t1 ID=Gchil600.t1|Name=Gchil600.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=224bp
MEEFEQKGSPLAAVRAFLAQQDVSSSENEEHPEKYIPLPARLGVGANPNQ
AVHAMITPGLSEASRRLGSALRRQAQAAGNDEAVVESSEGEDTESRARAI
STTHVRDQNPQGKEKEAIEKKSHAGGQNQKSERAVDLKSEEKDDSASDDE
WGDDVLRRMAGEQDVNFKSWSEGFAEGESTGVESNGYTNGFHGEKKCNID
VGLKRKKKKIRNRQKNVRRDKRK*
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mRNA from alignment at tig00004380_pilon:559762..560507+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil600.t1 ID=Gchil600.t1|Name=Gchil600.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=746bp|location=Sequence derived from alignment at tig00004380_pilon:559762..560507+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAATTCGAACAAAAGGGTAGTCCACTTGCTGCTGTCCGTGCTTT
TCTAGCACAGCAAGATGTTAGCTCTTCCGAAAATGAGGAACATCCCGAGA
AGTATATTCCTCTTCCAGCACGGTAGGATACAGCCAATTCTCTGAATTCT
CTCTCGTTCACAAACACATCGACTGACTTATATTTCGCCCACCTAGACTT
GGAGTTGGGGCAAACCCCAATCAGGCGGTACACGCGATGATCACGCCTGG
ACTAAGTGAGGCGAGCAGAAGACTGGGAAGTGCGCTAAGGAGGCAGGCAC
AAGCTGCCGGAAACGATGAAGCTGTCGTGGAGAGTAGCGAAGGTGAGGAT
ACTGAATCCAGAGCAAGAGCAATTTCTACAACGCACGTGAGAGATCAGAA
CCCACAAGGTAAGGAGAAGGAAGCTATCGAAAAGAAATCTCATGCTGGGG
GACAAAATCAAAAAAGCGAGCGAGCCGTAGATTTAAAAAGCGAGGAAAAG
GACGACTCTGCTAGTGACGATGAATGGGGAGACGATGTGCTTCGGCGCAT
GGCTGGAGAACAGGATGTGAATTTTAAGAGTTGGTCTGAGGGTTTTGCTG
AAGGAGAAAGCACAGGTGTAGAGTCAAATGGTTACACGAACGGATTTCAT
GGGGAAAAGAAGTGCAACATAGATGTTGGGTTGAAGCGCAAGAAAAAGAA
AATTAGGAATAGGCAGAAAAACGTGCGGCGTGACAAGCGAAAGTGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:559762..560507+

>Gchil600.t1 ID=Gchil600.t1|Name=Gchil600.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00004380_pilon:559762..560507+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAATTCGAACAAAAGGGTAGTCCACTTGCTGCTGTCCGTGCTTT
TCTAGCACAGCAAGATGTTAGCTCTTCCGAAAATGAGGAACATCCCGAGA
AGTATATTCCTCTTCCAGCACGACTTGGAGTTGGGGCAAACCCCAATCAG
GCGGTACACGCGATGATCACGCCTGGACTAAGTGAGGCGAGCAGAAGACT
GGGAAGTGCGCTAAGGAGGCAGGCACAAGCTGCCGGAAACGATGAAGCTG
TCGTGGAGAGTAGCGAAGGTGAGGATACTGAATCCAGAGCAAGAGCAATT
TCTACAACGCACGTGAGAGATCAGAACCCACAAGGTAAGGAGAAGGAAGC
TATCGAAAAGAAATCTCATGCTGGGGGACAAAATCAAAAAAGCGAGCGAG
CCGTAGATTTAAAAAGCGAGGAAAAGGACGACTCTGCTAGTGACGATGAA
TGGGGAGACGATGTGCTTCGGCGCATGGCTGGAGAACAGGATGTGAATTT
TAAGAGTTGGTCTGAGGGTTTTGCTGAAGGAGAAAGCACAGGTGTAGAGT
CAAATGGTTACACGAACGGATTTCATGGGGAAAAGAAGTGCAACATAGAT
GTTGGGTTGAAGCGCAAGAAAAAGAAAATTAGGAATAGGCAGAAAAACGT
GCGGCGTGACAAGCGAAAGTGA
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