Gchil5952.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5952.t1
Unique NameGchil5952.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:427203..428099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5952Gchil5952Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 427203..428099 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5952.t1.start1Gchil5952.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 427203..427205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5952.t1.CDS1Gchil5952.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 427203..428099 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5952.t1.exon1Gchil5952.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 427203..428099 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5952.t1.stop1Gchil5952.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 428097..428099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5952.t1Gchil5952.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 427203..428099 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5952.t1 ID=Gchil5952.t1|Name=Gchil5952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=299bp
MSSVRDRIRNLQAAKSAAEEDVSAAARVHTRAQEVERALSEGNDAAHAKS
LSQLTSRFDRAPDELDAGGRALSSRVAQFDARNGADSVHNRTKRLENEQN
TTGLVGRALPFRKEGSVGEAAARFAEREQPAAAEGVLKAKAKFEAAPRAA
EGAGRVATVVGALKEDNSQTKTAQQQKNITNRASIFEKAQEKPPVLAKHT
PSLMSFGSDDSAVAAKEAIDRRAAVFEKHSKDEPVVSAKENKPNAADVKE
KSVHDQLREVKRANEQLLSTLLKLTASFKALESTRDDLQQRITELENK*
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spliced messenger RNA

>Gchil5952.t1 ID=Gchil5952.t1|Name=Gchil5952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00025225_pilon:427203..428099+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCGTCAGAGATCGCATTCGAAACCTACAGGCCGCGAAAAGCGC
CGCCGAGGAGGACGTGTCCGCCGCGGCTAGGGTGCACACCCGCGCCCAAG
AGGTGGAACGTGCGCTTTCGGAAGGCAATGACGCCGCGCACGCCAAGTCA
CTTTCACAACTCACAAGCCGCTTCGATCGAGCCCCAGACGAGCTTGACGC
CGGTGGAAGGGCCCTAAGCTCCAGGGTCGCCCAGTTTGACGCTAGAAATG
GAGCTGACTCGGTGCACAATCGTACCAAACGATTGGAGAATGAGCAAAAC
ACCACGGGCTTGGTCGGAAGGGCGTTGCCCTTTCGGAAAGAGGGCTCGGT
TGGTGAAGCTGCTGCTCGCTTTGCTGAACGCGAACAACCTGCCGCGGCTG
AAGGAGTGCTCAAAGCAAAGGCAAAGTTCGAAGCTGCCCCGCGCGCTGCT
GAGGGTGCTGGACGCGTTGCAACGGTTGTTGGTGCATTAAAGGAAGACAA
TAGCCAAACGAAAACCGCACAACAACAGAAGAATATCACCAACCGGGCGT
CCATATTCGAAAAGGCACAGGAGAAACCGCCTGTGCTTGCAAAACATACG
CCTAGTTTAATGTCGTTTGGAAGCGACGATAGTGCAGTTGCTGCAAAGGA
GGCGATCGACCGCCGCGCTGCAGTGTTTGAGAAGCACAGCAAGGATGAGC
CAGTAGTGAGCGCGAAGGAAAACAAACCAAATGCTGCCGATGTCAAGGAG
AAGAGCGTCCATGACCAGCTTCGAGAAGTGAAACGCGCCAACGAACAACT
CCTTTCTACGCTGCTCAAGCTGACTGCTTCTTTCAAAGCGTTGGAGAGCA
CCAGAGATGATCTACAGCAACGCATCACTGAACTTGAGAACAAGTAA
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protein sequence of Gchil5952.t1

>Gchil5952.t1 ID=Gchil5952.t1|Name=Gchil5952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=299bp
MSSVRDRIRNLQAAKSAAEEDVSAAARVHTRAQEVERALSEGNDAAHAKS
LSQLTSRFDRAPDELDAGGRALSSRVAQFDARNGADSVHNRTKRLENEQN
TTGLVGRALPFRKEGSVGEAAARFAEREQPAAAEGVLKAKAKFEAAPRAA
EGAGRVATVVGALKEDNSQTKTAQQQKNITNRASIFEKAQEKPPVLAKHT
PSLMSFGSDDSAVAAKEAIDRRAAVFEKHSKDEPVVSAKENKPNAADVKE
KSVHDQLREVKRANEQLLSTLLKLTASFKALESTRDDLQQRITELENK*
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mRNA from alignment at tig00025225_pilon:427203..428099+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5952.t1 ID=Gchil5952.t1|Name=Gchil5952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00025225_pilon:427203..428099+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCGTCAGAGATCGCATTCGAAACCTACAGGCCGCGAAAAGCGC
CGCCGAGGAGGACGTGTCCGCCGCGGCTAGGGTGCACACCCGCGCCCAAG
AGGTGGAACGTGCGCTTTCGGAAGGCAATGACGCCGCGCACGCCAAGTCA
CTTTCACAACTCACAAGCCGCTTCGATCGAGCCCCAGACGAGCTTGACGC
CGGTGGAAGGGCCCTAAGCTCCAGGGTCGCCCAGTTTGACGCTAGAAATG
GAGCTGACTCGGTGCACAATCGTACCAAACGATTGGAGAATGAGCAAAAC
ACCACGGGCTTGGTCGGAAGGGCGTTGCCCTTTCGGAAAGAGGGCTCGGT
TGGTGAAGCTGCTGCTCGCTTTGCTGAACGCGAACAACCTGCCGCGGCTG
AAGGAGTGCTCAAAGCAAAGGCAAAGTTCGAAGCTGCCCCGCGCGCTGCT
GAGGGTGCTGGACGCGTTGCAACGGTTGTTGGTGCATTAAAGGAAGACAA
TAGCCAAACGAAAACCGCACAACAACAGAAGAATATCACCAACCGGGCGT
CCATATTCGAAAAGGCACAGGAGAAACCGCCTGTGCTTGCAAAACATACG
CCTAGTTTAATGTCGTTTGGAAGCGACGATAGTGCAGTTGCTGCAAAGGA
GGCGATCGACCGCCGCGCTGCAGTGTTTGAGAAGCACAGCAAGGATGAGC
CAGTAGTGAGCGCGAAGGAAAACAAACCAAATGCTGCCGATGTCAAGGAG
AAGAGCGTCCATGACCAGCTTCGAGAAGTGAAACGCGCCAACGAACAACT
CCTTTCTACGCTGCTCAAGCTGACTGCTTCTTTCAAAGCGTTGGAGAGCA
CCAGAGATGATCTACAGCAACGCATCACTGAACTTGAGAACAAGTAA
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Coding sequence (CDS) from alignment at tig00025225_pilon:427203..428099+

>Gchil5952.t1 ID=Gchil5952.t1|Name=Gchil5952.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00025225_pilon:427203..428099+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCCGTCAGAGATCGCATTCGAAACCTACAGGCCGCGAAAAGCGC
CGCCGAGGAGGACGTGTCCGCCGCGGCTAGGGTGCACACCCGCGCCCAAG
AGGTGGAACGTGCGCTTTCGGAAGGCAATGACGCCGCGCACGCCAAGTCA
CTTTCACAACTCACAAGCCGCTTCGATCGAGCCCCAGACGAGCTTGACGC
CGGTGGAAGGGCCCTAAGCTCCAGGGTCGCCCAGTTTGACGCTAGAAATG
GAGCTGACTCGGTGCACAATCGTACCAAACGATTGGAGAATGAGCAAAAC
ACCACGGGCTTGGTCGGAAGGGCGTTGCCCTTTCGGAAAGAGGGCTCGGT
TGGTGAAGCTGCTGCTCGCTTTGCTGAACGCGAACAACCTGCCGCGGCTG
AAGGAGTGCTCAAAGCAAAGGCAAAGTTCGAAGCTGCCCCGCGCGCTGCT
GAGGGTGCTGGACGCGTTGCAACGGTTGTTGGTGCATTAAAGGAAGACAA
TAGCCAAACGAAAACCGCACAACAACAGAAGAATATCACCAACCGGGCGT
CCATATTCGAAAAGGCACAGGAGAAACCGCCTGTGCTTGCAAAACATACG
CCTAGTTTAATGTCGTTTGGAAGCGACGATAGTGCAGTTGCTGCAAAGGA
GGCGATCGACCGCCGCGCTGCAGTGTTTGAGAAGCACAGCAAGGATGAGC
CAGTAGTGAGCGCGAAGGAAAACAAACCAAATGCTGCCGATGTCAAGGAG
AAGAGCGTCCATGACCAGCTTCGAGAAGTGAAACGCGCCAACGAACAACT
CCTTTCTACGCTGCTCAAGCTGACTGCTTCTTTCAAAGCGTTGGAGAGCA
CCAGAGATGATCTACAGCAACGCATCACTGAACTTGAGAACAAGTAA
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