Gchil595.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil595.t1
Unique NameGchil595.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:449350..450027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002503764.1
PFAMsACT_6,UPF0126
Max annot lvl2759|Eukaryota
Evalue5.25e-66
EggNOG OGs2B6TB@1|root,2S0MY@2759|Eukaryota
DescriptionUPF0126 domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil595Gchil595Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 449350..450027 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil595.t1.start1Gchil595.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 449350..449352 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil595.t1.CDS1Gchil595.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 449350..450027 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil595.t1.exon1Gchil595.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 449350..450027 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil595.t1.stop1Gchil595.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 450025..450027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil595.t1Gchil595.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 449350..450027 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil595.t1 ID=Gchil595.t1|Name=Gchil595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=226bp
MDSLPRYANGSTLGLLRLGDYIGTLSFAHSGALLAAASGMDVLGATMVGT
ITAVGGGTIRDAIILAKRPFWTDEVEYLYLCIATATATFAAYSASAPPTS
REESVPEFVGDTIGVGAFCVIGAMNGVRARVPFVVVVLCGMATATFGGVV
RDVLCGRKVRILHSRAEIYATTAAAGAASYVAARAAGAPVIARVAAGVGV
AAALRTWAWASGVRLPVWPEHQRDD*
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spliced messenger RNA

>Gchil595.t1 ID=Gchil595.t1|Name=Gchil595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00004380_pilon:449350..450027+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCGTTGCCGCGCTACGCCAACGGCAGCACGCTGGGGCTTCTGCG
CCTCGGCGACTACATCGGAACGCTATCGTTCGCGCACTCCGGCGCGCTGT
TGGCGGCTGCCAGCGGAATGGACGTGTTGGGCGCCACCATGGTGGGCACC
ATCACCGCAGTGGGCGGTGGCACCATTCGCGACGCCATCATCCTCGCAAA
GCGTCCCTTCTGGACCGACGAAGTCGAGTATCTGTACCTCTGCATAgcca
cagccaccgccaccttcgccgcgtacagcgccagcgcgccgccCACATCG
CGCGAGGAAAGCGTGCCAGAATTCGTGGGCGACACCATCGGCGTGGGTGC
CTTCTGCGTCATTGGCGCCATGAACGGCGTGCGCGCGCGCGTACCGTTCG
TGGTTGTCGTGCTGTGCGGCATGGCCACGGCCACGTTTGGCGGCGTCGTG
CGTGACGTGTTGTGTGGCCGCAAAGTGCGCATCCTTCACTCGCGCGCCGA
GATCTACGCTAccaccgccgccgcgggcgccgcttcttacgtcgccgcgc
gcgccgctggtgcgcccgtcatcgcgcgcgtcgccgccggcgtgggcgtt
gccgccgccCTCCGCACCTGGGCCTGGGCCAGCGGAGTACGGCTGCCCGT
CTGGCCTGAGCACCAGCGCGACGACTAA
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protein sequence of Gchil595.t1

>Gchil595.t1 ID=Gchil595.t1|Name=Gchil595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=226bp
MDSLPRYANGSTLGLLRLGDYIGTLSFAHSGALLAAASGMDVLGATMVGT
ITAVGGGTIRDAIILAKRPFWTDEVEYLYLCIATATATFAAYSASAPPTS
REESVPEFVGDTIGVGAFCVIGAMNGVRARVPFVVVVLCGMATATFGGVV
RDVLCGRKVRILHSRAEIYATTAAAGAASYVAARAAGAPVIARVAAGVGV
AAALRTWAWASGVRLPVWPEHQRDD*
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mRNA from alignment at tig00004380_pilon:449350..450027+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil595.t1 ID=Gchil595.t1|Name=Gchil595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00004380_pilon:449350..450027+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCGTTGCCGCGCTACGCCAACGGCAGCACGCTGGGGCTTCTGCG
CCTCGGCGACTACATCGGAACGCTATCGTTCGCGCACTCCGGCGCGCTGT
TGGCGGCTGCCAGCGGAATGGACGTGTTGGGCGCCACCATGGTGGGCACC
ATCACCGCAGTGGGCGGTGGCACCATTCGCGACGCCATCATCCTCGCAAA
GCGTCCCTTCTGGACCGACGAAGTCGAGTATCTGTACCTCTGCATAgcca
cagccaccgccaccttcgccgcgtacagcgccagcgcgccgccCACATCG
CGCGAGGAAAGCGTGCCAGAATTCGTGGGCGACACCATCGGCGTGGGTGC
CTTCTGCGTCATTGGCGCCATGAACGGCGTGCGCGCGCGCGTACCGTTCG
TGGTTGTCGTGCTGTGCGGCATGGCCACGGCCACGTTTGGCGGCGTCGTG
CGTGACGTGTTGTGTGGCCGCAAAGTGCGCATCCTTCACTCGCGCGCCGA
GATCTACGCTAccaccgccgccgcgggcgccgcttcttacgtcgccgcgc
gcgccgctggtgcgcccgtcatcgcgcgcgtcgccgccggcgtgggcgtt
gccgccgccCTCCGCACCTGGGCCTGGGCCAGCGGAGTACGGCTGCCCGT
CTGGCCTGAGCACCAGCGCGACGACTAA
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Coding sequence (CDS) from alignment at tig00004380_pilon:449350..450027+

>Gchil595.t1 ID=Gchil595.t1|Name=Gchil595.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00004380_pilon:449350..450027+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACTCGTTGCCGCGCTACGCCAACGGCAGCACGCTGGGGCTTCTGCG
CCTCGGCGACTACATCGGAACGCTATCGTTCGCGCACTCCGGCGCGCTGT
TGGCGGCTGCCAGCGGAATGGACGTGTTGGGCGCCACCATGGTGGGCACC
ATCACCGCAGTGGGCGGTGGCACCATTCGCGACGCCATCATCCTCGCAAA
GCGTCCCTTCTGGACCGACGAAGTCGAGTATCTGTACCTCTGCATAgcca
cagccaccgccaccttcgccgcgtacagcgccagcgcgccgccCACATCG
CGCGAGGAAAGCGTGCCAGAATTCGTGGGCGACACCATCGGCGTGGGTGC
CTTCTGCGTCATTGGCGCCATGAACGGCGTGCGCGCGCGCGTACCGTTCG
TGGTTGTCGTGCTGTGCGGCATGGCCACGGCCACGTTTGGCGGCGTCGTG
CGTGACGTGTTGTGTGGCCGCAAAGTGCGCATCCTTCACTCGCGCGCCGA
GATCTACGCTAccaccgccgccgcgggcgccgcttcttacgtcgccgcgc
gcgccgctggtgcgcccgtcatcgcgcgcgtcgccgccggcgtgggcgtt
gccgccgccCTCCGCACCTGGGCCTGGGCCAGCGGAGTACGGCTGCCCGT
CTGGCCTGAGCACCAGCGCGACGACTAA
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