Gchil5944.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5944.t1
Unique NameGchil5944.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:400230..400928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO141CT
Preferred nameFDX1L
PFAMsFer2
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00769,RC02120,RC03389,RC03391
KEGG koko:K02259,ko:K02516,ko:K22070,ko:K22071
KEGG TC3.D.4.4
KEGG ReactionR07412,R11216,R11218,R11220
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko02020,ko03013,ko04011,ko04111,ko04714,map00190,map00860,map01100,map01110,map02020,map03013,map04011,map04111,map04714
KEGG ModuleM00154
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0006066,GO:0006091,GO:0006139,GO:0006629,GO:0006694,GO:0006700,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006743,GO:0006744,GO:0006753,GO:0006778,GO:0006779,GO:0006783,GO:0006784,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008022,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008207,GO:0008610,GO:0009055,GO:0009058,GO:0009108,GO:0009117,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010565,GO:0010566,GO:0010817,GO:0010893,GO:0014070,GO:0014074,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016125,GO:0016226,GO:0016491,GO:0016651,GO:0016653,GO:0018130,GO:0019216,GO:0019218,GO:0019222,GO:0019362,GO:0019438,GO:0019637,GO:0019866,GO:0019899,GO:0022607,GO:0022900,GO:0022904,GO:0030061,GO:0030325,GO:0031090,GO:0031163,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032592,GO:0032870,GO:0033013,GO:0033014,GO:0033993,GO:0034641,GO:0034698,GO:0034754,GO:0035270,GO:0035690,GO:0042168,GO:0042180,GO:0042181,GO:0042221,GO:0042440,GO:0042445,GO:0042446,GO:0042493,GO:0042802,GO:0042803,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044320,GO:0044321,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044571,GO:0045333,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046148,GO:0046160,GO:0046483,GO:0046496,GO:0046677,GO:0046683,GO:0046872,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0046914,GO:0046983,GO:0048037,GO:0048513,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050810,GO:0050896,GO:0051094,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051341,GO:0051353,GO:0051536,GO:0051537,GO:0051540,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0061478,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0070995,GO:0071236,GO:0071310,GO:0071320,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0071867,GO:0071868,GO:0071869,GO:0071870,GO:0071871,GO:0071872,GO:0072524,GO:0080090,GO:0090030,GO:0090031,GO:0097305,GO:0097306,GO:0098573,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901654,GO:1901655,GO:1901661,GO:1901663,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902652,GO:1904321,GO:1904322,GO:2000026
Evalue1.31e-41
EggNOG OGsCOG0633@1|root,KOG3309@2759|Eukaryota
EC2.1.1.320
Description2 iron, 2 sulfur cluster binding
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5944Gchil5944Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 400230..400928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1Gchil5944.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 400230..400928 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1.start1Gchil5944.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 400230..400232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1.CDS1Gchil5944.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 400230..400699 +
Gchil5944.t1.CDS2Gchil5944.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 400814..400928 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1.exon1Gchil5944.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 400230..400699 +
Gchil5944.t1.exon2Gchil5944.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 400814..400928 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1.intron1Gchil5944.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025225_pilon 400700..400813 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5944.t1.stop1Gchil5944.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 400926..400928 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5944.t1 ID=Gchil5944.t1|Name=Gchil5944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MCASPPRRVSATPPRRLAASPPRRHAASPPRRLDRLAASMNALWPAAVRA
ARAAHLARRPQRAPVASTSTSATSDDASVPFTVVTRDGDVVRVRGDVGDS
VLAVAHRAQLDLEGACEGSLACSTCHVYVDHTSFAKLPPPCDDENDMLDL
AFALSEWSRLACQLRLEKRLCGMRVTLPPATRNMAVDGFVPQPH*
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spliced messenger RNA

>Gchil5944.t1 ID=Gchil5944.t1|Name=Gchil5944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00025225_pilon:400230..400928+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCTTCTCCGCCACGCCGCGTCTCCGCCACGCCGCCTCGCCGCCT
CGCCGCCTCGCCGCCTCGCCGCCACGCCGCGTCTCCGCCACGCCGCCTCG
ACCGCCTCGCCGCCTCGATGAAcgcgctgtggccagcggccgtgcgcgct
gcgcgcgccgcgcatcttgcgcgccgaccacagcgcgcgcCTGTGGCATC
TACCTCCACCTCCGCGACGAGCGACGACGCGTCGGTGCCGTTCACCGTTG
TGACTCGCGACGGCGATGTGGTGCGCGTGCGCGGTGACGTGGGCGATTCA
GTGCTTGCTGTTGCGCATCGTGCCCAACTTGACTTGGAAGGCGCATGCGA
GGGAAGTTTAGCTTGCTCTACGTGCCATGTATACGTGGATCACACCAGTT
TTGCCAAGTTACCACCGCCATGCGACGATGAGAATGACATGCTTGACTTG
GCGTTTGCGCTGTCCGAGTGGTCGCGATTGGCATGTCAGTTGCGACTGGA
GAAGCGACTGTGTGGTATGCGCGTCACTTTGCCGCCGGCCACGCGCAACA
TGGCCGTGGACGGCTTTGTGCCACAGCCGCATTGA
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protein sequence of Gchil5944.t1

>Gchil5944.t1 ID=Gchil5944.t1|Name=Gchil5944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MCASPPRRVSATPPRRLAASPPRRHAASPPRRLDRLAASMNALWPAAVRA
ARAAHLARRPQRAPVASTSTSATSDDASVPFTVVTRDGDVVRVRGDVGDS
VLAVAHRAQLDLEGACEGSLACSTCHVYVDHTSFAKLPPPCDDENDMLDL
AFALSEWSRLACQLRLEKRLCGMRVTLPPATRNMAVDGFVPQPH*
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mRNA from alignment at tig00025225_pilon:400230..400928+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5944.t1 ID=Gchil5944.t1|Name=Gchil5944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00025225_pilon:400230..400928+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCTTCTCCGCCACGCCGCGTCTCCGCCACGCCGCCTCGCCGCCT
CGCCGCCTCGCCGCCTCGCCGCCACGCCGCGTCTCCGCCACGCCGCCTCG
ACCGCCTCGCCGCCTCGATGAAcgcgctgtggccagcggccgtgcgcgct
gcgcgcgccgcgcatcttgcgcgccgaccacagcgcgcgcCTGTGGCATC
TACCTCCACCTCCGCGACGAGCGACGACGCGTCGGTGCCGTTCACCGTTG
TGACTCGCGACGGCGATGTGGTGCGCGTGCGCGGTGACGTGGGCGATTCA
GTGCTTGCTGTTGCGCATCGTGCCCAACTTGACTTGGAAGGCGCATGCGA
GGGAAGTTTAGCTTGCTCTACGTGCCATGTATACGTGGATCACACCAGTT
TTGCCAAGTTACCACCGCCATGCGACGATGAGAATGACATGCTTGACTTG
GCGTTTGCGCTGTCCGAGTGGTACGTTTTGCTTGTttgttgttgttgttg
ttgttgttgtGAGTGTGTTTCTTTCTGCCTTGTCTCACCATGATGACGTT
TGTGTTTTTCTTGCTTGCTGCCGTGTGCGACAAGGTCGCGATTGGCATGT
CAGTTGCGACTGGAGAAGCGACTGTGTGGTATGCGCGTCACTTTGCCGCC
GGCCACGCGCAACATGGCCGTGGACGGCTTTGTGCCACAGCCGCATTGA
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Coding sequence (CDS) from alignment at tig00025225_pilon:400230..400928+

>Gchil5944.t1 ID=Gchil5944.t1|Name=Gchil5944.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00025225_pilon:400230..400928+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCGCTTCTCCGCCACGCCGCGTCTCCGCCACGCCGCCTCGCCGCCT
CGCCGCCTCGCCGCCTCGCCGCCACGCCGCGTCTCCGCCACGCCGCCTCG
ACCGCCTCGCCGCCTCGATGAAcgcgctgtggccagcggccgtgcgcgct
gcgcgcgccgcgcatcttgcgcgccgaccacagcgcgcgcCTGTGGCATC
TACCTCCACCTCCGCGACGAGCGACGACGCGTCGGTGCCGTTCACCGTTG
TGACTCGCGACGGCGATGTGGTGCGCGTGCGCGGTGACGTGGGCGATTCA
GTGCTTGCTGTTGCGCATCGTGCCCAACTTGACTTGGAAGGCGCATGCGA
GGGAAGTTTAGCTTGCTCTACGTGCCATGTATACGTGGATCACACCAGTT
TTGCCAAGTTACCACCGCCATGCGACGATGAGAATGACATGCTTGACTTG
GCGTTTGCGCTGTCCGAGTGGTCGCGATTGGCATGTCAGTTGCGACTGGA
GAAGCGACTGTGTGGTATGCGCGTCACTTTGCCGCCGGCCACGCGCAACA
TGGCCGTGGACGGCTTTGTGCCACAGCCGCATTGA
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