Gchil5939.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5939.t1
Unique NameGchil5939.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length509
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:384259..385785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000016626
PFAMsPA,zf-RING_2
Max annot lvl121069|Pythiales
Evalue1.27e-14
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,1MENE@121069|Pythiales
DescriptionSource PGD
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5939Gchil5939Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 384259..385785 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5939.t1.stop1Gchil5939.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 384259..384261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5939.t1.CDS1Gchil5939.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 384259..385785 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5939.t1.exon1Gchil5939.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 384259..385785 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5939.t1.start1Gchil5939.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 385783..385785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5939.t1Gchil5939.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 384259..385785 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5939.t1 ID=Gchil5939.t1|Name=Gchil5939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=509bp
MLLLLLIVPVATAIIITAPEACGGSRVVRHSTAFFGPTADESAVANSNVP
LFPPRAQRDGVYLRLVSRVGRQHVHTLRSAAKSLFLGMLFARAPDGELPS
DLPPQIPLIDAPSVTIPAQNTPDAWKSDPQAPVPTAGPTQAPVPSSHPHH
SHHPHHTHHSVPSYELVASTSHERPLAYARLSPSVEPSAFALFDSCFQLS
VPADQHAVKGTIAVVARGVCDFAQKIHFMQDAGALGVIVVNFKDEGDHLA
NMKLNTTKKNPEISIPAVMIRYRDWARIAPCWNETKVIFTSEGEAQGDYG
HDALNWAMMRGMALWILCQCGVNVVRYKRRVSEYRARADAIAALPVETYH
RTANHDHSFAQDETTSLLTDTSQVDTSTIPPATNKAVTSPAPSSSVMDHH
AERFSLVHSESQAGSSSAPPPISAPSSASTAPHDEAGSDDEEPICAVCLE
EFESGQQVRQLACSHLYHRTCIDPWLQASSNSCPLCKREIPNLPPPPTQL
HYGSMLIS*
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spliced messenger RNA

>Gchil5939.t1 ID=Gchil5939.t1|Name=Gchil5939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00025225_pilon:384259..385785- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACTTCTGCTGCTCATCGTCCCGGTCGCCACCGCCATCATCATCAC
CGCGCCCGAGGCATGCGGCGGCTCGCGCGTCGTCAGACATTCCACCGCCT
TCTTCGGACCCACTGCCGATGAGTCTGCCGTCGCCAATAGCAATGTTCCT
TTGTTTCCGCCACGCGCGCAGCGCGATGGCGTTTACTTACGTCTCGTGTC
TCGCGTCGGTCGTCAGCACGTGCACACGCTGCGCTCGGCCGCAAAGTCAC
TCTTTCTCGGCATGCTGTTCGCTCGCGCTCCCGACGGCGAGCTGCCTTCC
GACCTTCCGCCGCAGATTCCGCTTATCGACGCGCCTTCCGTCACCATTCC
CGCACAGAACACCCCGGATGCGTGGAAGTCTGACCCACAGGCTCCTGTAC
CTACCGCGGGTCCCACTCAAGCACCTGTTCCGTCCTCTCACCCGCATCAC
TCGCATCACCCGCATCATACGCATCACAGTGTGCCGTCGTATGAACTTGT
TGCTTCCACCTCGCACGAACGCCCTCTCGCATATGCTCGTTTGTCGCCCT
CAGTCGAACCCTCTGCATTTGCCTTGTTTGACTCCTGCTTTCAGCTGTCG
GTGCCAGCCGATCAGCATGCCGTTAAGGGCACCATCGCCGTCGTAGCTCG
CGGTGTTTGTGACTTTGCGCAGAAAATTCATTTCATGCAAGACGCGGGAG
CGCTCGGCGTTATTGTTGTCAACTTCAAAGATGAAGGTGACCATCTTGCA
AACATGAAACTTAACACTACTAAAAAGAACCCTGAGATTTCTATCCCAGC
TGTTATGATACGCTATCGCGACTGGGCTAGAATCGCCCCATGTTGGAATG
AAACGAAGGTCATATTCACGTCGGAGGGAGAGGCTCAGGGCGACTACGGA
CATGATGCGCTCAACTGGGCAATGATGAGGGGAATGGCCTTGTGGATTTT
GTGCCAATGCGGCGTCAACGTTGTGCGCTACAAACGCCGTGTTTCTGAGT
ATCGCGCCCGTGCCGATGCGATAGCCGCCTTACCTGTAGAGACTTACCAT
CGAACTGCAAATCATGACCACTCCTTCGCACAAGACGAAACTACATCATT
ACTTACGGATACATCTCAAGTCGATACATCAACAATACCACCTGCTACAA
ACAAAGCTGTTACCTCGCCTGCACCTTCTTCATCTGTGATGGATCATCAT
GCGGAGCGATTTAGTCTTGTGCATTCCGAGTCACAAGCCGGTTCTTCATC
AGCTCCCCCGCCAATATCTGCCCCGTCTTCCGCATCGACGGCACCTCATG
ACGAAGCGGGAAGCGACGACGAAGAGCCTATTTGTGCCGTTTGCCTCGAA
GAGTTTGAATCCGGACAACAAGTGCGTCAACTGGCTTGTTCTCACCTGTA
CCACAGGACGTGTATCGACCCATGGCTACAAGCAAGTTCAAACAGCTGTC
CTTTATGCAAAAGAGAAATTCCGAACCTACCACCCCCTCCAACGCAGTTA
CATTACGGATCAATGCTCATATCCTAA
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protein sequence of Gchil5939.t1

>Gchil5939.t1 ID=Gchil5939.t1|Name=Gchil5939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=509bp
MLLLLLIVPVATAIIITAPEACGGSRVVRHSTAFFGPTADESAVANSNVP
LFPPRAQRDGVYLRLVSRVGRQHVHTLRSAAKSLFLGMLFARAPDGELPS
DLPPQIPLIDAPSVTIPAQNTPDAWKSDPQAPVPTAGPTQAPVPSSHPHH
SHHPHHTHHSVPSYELVASTSHERPLAYARLSPSVEPSAFALFDSCFQLS
VPADQHAVKGTIAVVARGVCDFAQKIHFMQDAGALGVIVVNFKDEGDHLA
NMKLNTTKKNPEISIPAVMIRYRDWARIAPCWNETKVIFTSEGEAQGDYG
HDALNWAMMRGMALWILCQCGVNVVRYKRRVSEYRARADAIAALPVETYH
RTANHDHSFAQDETTSLLTDTSQVDTSTIPPATNKAVTSPAPSSSVMDHH
AERFSLVHSESQAGSSSAPPPISAPSSASTAPHDEAGSDDEEPICAVCLE
EFESGQQVRQLACSHLYHRTCIDPWLQASSNSCPLCKREIPNLPPPPTQL
HYGSMLIS*
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mRNA from alignment at tig00025225_pilon:384259..385785-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5939.t1 ID=Gchil5939.t1|Name=Gchil5939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00025225_pilon:384259..385785- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACTTCTGCTGCTCATCGTCCCGGTCGCCACCGCCATCATCATCAC
CGCGCCCGAGGCATGCGGCGGCTCGCGCGTCGTCAGACATTCCACCGCCT
TCTTCGGACCCACTGCCGATGAGTCTGCCGTCGCCAATAGCAATGTTCCT
TTGTTTCCGCCACGCGCGCAGCGCGATGGCGTTTACTTACGTCTCGTGTC
TCGCGTCGGTCGTCAGCACGTGCACACGCTGCGCTCGGCCGCAAAGTCAC
TCTTTCTCGGCATGCTGTTCGCTCGCGCTCCCGACGGCGAGCTGCCTTCC
GACCTTCCGCCGCAGATTCCGCTTATCGACGCGCCTTCCGTCACCATTCC
CGCACAGAACACCCCGGATGCGTGGAAGTCTGACCCACAGGCTCCTGTAC
CTACCGCGGGTCCCACTCAAGCACCTGTTCCGTCCTCTCACCCGCATCAC
TCGCATCACCCGCATCATACGCATCACAGTGTGCCGTCGTATGAACTTGT
TGCTTCCACCTCGCACGAACGCCCTCTCGCATATGCTCGTTTGTCGCCCT
CAGTCGAACCCTCTGCATTTGCCTTGTTTGACTCCTGCTTTCAGCTGTCG
GTGCCAGCCGATCAGCATGCCGTTAAGGGCACCATCGCCGTCGTAGCTCG
CGGTGTTTGTGACTTTGCGCAGAAAATTCATTTCATGCAAGACGCGGGAG
CGCTCGGCGTTATTGTTGTCAACTTCAAAGATGAAGGTGACCATCTTGCA
AACATGAAACTTAACACTACTAAAAAGAACCCTGAGATTTCTATCCCAGC
TGTTATGATACGCTATCGCGACTGGGCTAGAATCGCCCCATGTTGGAATG
AAACGAAGGTCATATTCACGTCGGAGGGAGAGGCTCAGGGCGACTACGGA
CATGATGCGCTCAACTGGGCAATGATGAGGGGAATGGCCTTGTGGATTTT
GTGCCAATGCGGCGTCAACGTTGTGCGCTACAAACGCCGTGTTTCTGAGT
ATCGCGCCCGTGCCGATGCGATAGCCGCCTTACCTGTAGAGACTTACCAT
CGAACTGCAAATCATGACCACTCCTTCGCACAAGACGAAACTACATCATT
ACTTACGGATACATCTCAAGTCGATACATCAACAATACCACCTGCTACAA
ACAAAGCTGTTACCTCGCCTGCACCTTCTTCATCTGTGATGGATCATCAT
GCGGAGCGATTTAGTCTTGTGCATTCCGAGTCACAAGCCGGTTCTTCATC
AGCTCCCCCGCCAATATCTGCCCCGTCTTCCGCATCGACGGCACCTCATG
ACGAAGCGGGAAGCGACGACGAAGAGCCTATTTGTGCCGTTTGCCTCGAA
GAGTTTGAATCCGGACAACAAGTGCGTCAACTGGCTTGTTCTCACCTGTA
CCACAGGACGTGTATCGACCCATGGCTACAAGCAAGTTCAAACAGCTGTC
CTTTATGCAAAAGAGAAATTCCGAACCTACCACCCCCTCCAACGCAGTTA
CATTACGGATCAATGCTCATATCCTAA
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Coding sequence (CDS) from alignment at tig00025225_pilon:384259..385785-

>Gchil5939.t1 ID=Gchil5939.t1|Name=Gchil5939.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00025225_pilon:384259..385785- (Gracilaria chilensis NLEC103_M9 male)
ATGCTACTTCTGCTGCTCATCGTCCCGGTCGCCACCGCCATCATCATCAC
CGCGCCCGAGGCATGCGGCGGCTCGCGCGTCGTCAGACATTCCACCGCCT
TCTTCGGACCCACTGCCGATGAGTCTGCCGTCGCCAATAGCAATGTTCCT
TTGTTTCCGCCACGCGCGCAGCGCGATGGCGTTTACTTACGTCTCGTGTC
TCGCGTCGGTCGTCAGCACGTGCACACGCTGCGCTCGGCCGCAAAGTCAC
TCTTTCTCGGCATGCTGTTCGCTCGCGCTCCCGACGGCGAGCTGCCTTCC
GACCTTCCGCCGCAGATTCCGCTTATCGACGCGCCTTCCGTCACCATTCC
CGCACAGAACACCCCGGATGCGTGGAAGTCTGACCCACAGGCTCCTGTAC
CTACCGCGGGTCCCACTCAAGCACCTGTTCCGTCCTCTCACCCGCATCAC
TCGCATCACCCGCATCATACGCATCACAGTGTGCCGTCGTATGAACTTGT
TGCTTCCACCTCGCACGAACGCCCTCTCGCATATGCTCGTTTGTCGCCCT
CAGTCGAACCCTCTGCATTTGCCTTGTTTGACTCCTGCTTTCAGCTGTCG
GTGCCAGCCGATCAGCATGCCGTTAAGGGCACCATCGCCGTCGTAGCTCG
CGGTGTTTGTGACTTTGCGCAGAAAATTCATTTCATGCAAGACGCGGGAG
CGCTCGGCGTTATTGTTGTCAACTTCAAAGATGAAGGTGACCATCTTGCA
AACATGAAACTTAACACTACTAAAAAGAACCCTGAGATTTCTATCCCAGC
TGTTATGATACGCTATCGCGACTGGGCTAGAATCGCCCCATGTTGGAATG
AAACGAAGGTCATATTCACGTCGGAGGGAGAGGCTCAGGGCGACTACGGA
CATGATGCGCTCAACTGGGCAATGATGAGGGGAATGGCCTTGTGGATTTT
GTGCCAATGCGGCGTCAACGTTGTGCGCTACAAACGCCGTGTTTCTGAGT
ATCGCGCCCGTGCCGATGCGATAGCCGCCTTACCTGTAGAGACTTACCAT
CGAACTGCAAATCATGACCACTCCTTCGCACAAGACGAAACTACATCATT
ACTTACGGATACATCTCAAGTCGATACATCAACAATACCACCTGCTACAA
ACAAAGCTGTTACCTCGCCTGCACCTTCTTCATCTGTGATGGATCATCAT
GCGGAGCGATTTAGTCTTGTGCATTCCGAGTCACAAGCCGGTTCTTCATC
AGCTCCCCCGCCAATATCTGCCCCGTCTTCCGCATCGACGGCACCTCATG
ACGAAGCGGGAAGCGACGACGAAGAGCCTATTTGTGCCGTTTGCCTCGAA
GAGTTTGAATCCGGACAACAAGTGCGTCAACTGGCTTGTTCTCACCTGTA
CCACAGGACGTGTATCGACCCATGGCTACAAGCAAGTTCAAACAGCTGTC
CTTTATGCAAAAGAGAAATTCCGAACCTACCACCCCCTCCAACGCAGTTA
CATTACGGATCAATGCTCATATCCTAA
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