Gchil5932.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5932.t1
Unique NameGchil5932.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:221745..222181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5932Gchil5932Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 221745..222181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1Gchil5932.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 221745..222181 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1.start1Gchil5932.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 221745..221747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1.CDS1Gchil5932.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 221745..222074 +
Gchil5932.t1.CDS2Gchil5932.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 222128..222181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1.exon1Gchil5932.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 221745..222074 +
Gchil5932.t1.exon2Gchil5932.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 222128..222181 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1.intron1Gchil5932.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025225_pilon 222075..222127 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5932.t1.stop1Gchil5932.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 222179..222181 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5932.t1 ID=Gchil5932.t1|Name=Gchil5932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=128bp
MEQKAKYRNEYKVRKPLEREARSAGKGRETIKKGQIHRIGAEEIDSHSAV
VSTTFRQDAVEVFVMADQISDVKLIPEDIFKTLQSSAPGLKVTELNPTHV
YKGIGKTSGEYKTGPEIHPVETRESGI*
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spliced messenger RNA

>Gchil5932.t1 ID=Gchil5932.t1|Name=Gchil5932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=384bp|location=Sequence derived from alignment at tig00025225_pilon:221745..222181+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAGAAAGCAAAGTACAGAAACGAGTACAAAGTGCGGAAACCCCT
TGAACGAGAGGCGAGAAGTGCTGGTAAAGGGAGGGAGACCATTAAAAAAG
GCCAAATTCACCGCATCGGGGCCGAGGAAATAGATTCTCACTCGGCTGTG
GTTAGCACGACATTCCGTCAGGATGCCGTGGAAGTCTTCGTAATGGCTGA
CCAGATCTCAGATGTCAAACTTATCCCCGAGGATATCTTTAAGACATTAC
AATCTTCAGCTCCAGGACTGAAAGTTACGGAGTTGAATCCAACCCATGTT
TACAAGGGAATCGGAAAGACATCTGGAGAATACAAGACTGGTCCTGAGAT
CCATCCCGTGGAAACTCGTGAAAGTGGAATCTGA
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protein sequence of Gchil5932.t1

>Gchil5932.t1 ID=Gchil5932.t1|Name=Gchil5932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=128bp
MEQKAKYRNEYKVRKPLEREARSAGKGRETIKKGQIHRIGAEEIDSHSAV
VSTTFRQDAVEVFVMADQISDVKLIPEDIFKTLQSSAPGLKVTELNPTHV
YKGIGKTSGEYKTGPEIHPVETRESGI*
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mRNA from alignment at tig00025225_pilon:221745..222181+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5932.t1 ID=Gchil5932.t1|Name=Gchil5932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp|location=Sequence derived from alignment at tig00025225_pilon:221745..222181+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCAGAAAGCAAAGTACAGAAACGAGTACAAAGTGCGGAAACCCCT
TGAACGAGAGGCGAGAAGTGCTGGTAAAGGGAGGGAGACCATTAAAAAAG
GCCAAATTCACCGCATCGGGGCCGAGGAAATAGATTCTCACTCGGCTGTG
GTTAGCACGACATTCCGTCAGGATGCCGTGGAAGTCTTCGTAATGGCTGA
CCAGATCTCAGATGTCAAACTTATCCCCGAGGATATCTTTAAGACATTAC
AATCTTCAGCTCCAGGACTGAAAGTTACGGAGTTGAATCCAACCCATGTT
TACAAGGGAATCGGAAAGACATCTGGAGAAGTGTGTTGTACCCATCAGGC
TTTCATAAATGTGCACTGGCGTATTCGACATAGTACAAGACTGGTCCTGA
GATCCATCCCGTGGAAACTCGTGAAAGTGGAATCTGA
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Coding sequence (CDS) from alignment at tig00025225_pilon:221745..222181+

>Gchil5932.t1 ID=Gchil5932.t1|Name=Gchil5932.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=384bp|location=Sequence derived from alignment at tig00025225_pilon:221745..222181+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCAGAAAGCAAAGTACAGAAACGAGTACAAAGTGCGGAAACCCCT
TGAACGAGAGGCGAGAAGTGCTGGTAAAGGGAGGGAGACCATTAAAAAAG
GCCAAATTCACCGCATCGGGGCCGAGGAAATAGATTCTCACTCGGCTGTG
GTTAGCACGACATTCCGTCAGGATGCCGTGGAAGTCTTCGTAATGGCTGA
CCAGATCTCAGATGTCAAACTTATCCCCGAGGATATCTTTAAGACATTAC
AATCTTCAGCTCCAGGACTGAAAGTTACGGAGTTGAATCCAACCCATGTT
TACAAGGGAATCGGAAAGACATCTGGAGAATACAAGACTGGTCCTGAGAT
CCATCCCGTGGAAACTCGTGAAAGTGGAATCTGA
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