Gchil5912.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5912.t1
Unique NameGchil5912.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025225_piloncontigtig00025225_pilon:143095..144051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5912Gchil5912Gracilaria chilensis NLEC103_M9 malegenetig00025225_pilon 143095..144051 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5912.t1.stop1Gchil5912.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025225_pilon 143095..143097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5912.t1.CDS1Gchil5912.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025225_pilon 143095..144051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5912.t1.exon1Gchil5912.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025225_pilon 143095..144051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5912.t1.start1Gchil5912.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025225_pilon 144049..144051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5912.t1Gchil5912.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025225_pilon 143095..144051 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5912.t1 ID=Gchil5912.t1|Name=Gchil5912.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MDAPAFAINGMFSAVKVRTSSFTANNVSPRTGTASPPAVTMAVDAFQKKF
QSFGKINIDYSRPKKLASFKRAGYPVSFDYPNSPAMAGHYSISNCNVPSA
CDKIFMKYDEYCAKGMMQVFKRSAVPFGTYTTKCTEGTVPQQAFAKRVFN
RTKAFRQAQKPISVRLAERYENRRLAFTMANGCHREEQQFSTMPMSAATY
LAGRAEAMGTCYRVVTPTSIAEDYMAAGVRAQITAKAHPSGVYRVGVCED
GYAKGDAENLRVAALAAEFRAGQQSPSTVTGQQYESARTARKLYASTCHH
EETQIFAYPAVAAAMCRD*
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spliced messenger RNA

>Gchil5912.t1 ID=Gchil5912.t1|Name=Gchil5912.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00025225_pilon:143095..144051- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCCCGCTTTTGCTATCAATGGAATGTTCTCGGCCGTCAAGGT
CCGCACGTCTTCCTTCACTGCCAACAATGTGTCACCTCGCACCGGCACCG
CTTCTCCGCCAGCCGTCACCATGGCGGTCGACGCCTTCCAGAAGAAGTTT
CAGAGCTTTGGAAAAATCAACATTGACTACTCGCGCCCGAAGAAACTAGC
CTCCTTCAAGCGAGCAGGCTACCCAGTCAGCTTTGACTACCCCAACTCCC
CCGCCATGGCCGGGCACTACTCAATCTCCAACTGCAATGTACCCAGCGCG
TGCGACAAAATTTTCATGAAGTACGACGAGTACTGCGCAAAAGGAATGAT
GCAAGTGTTCAAGCGTTCGGCTGTTCCATTCGGTACCTACACCACCAAGT
GCACCGAGGGCACCGTTCCGCAGCAAGCGTTTGCGAAGCGCGTGTTCAAC
CGTACCAAGGCATTCCGTCAGGCGCAGAAGCCAATTAGCGTACGTCTCGC
CGAGCGTTATGAAAACCGACGTCTTGCTTTCACTATGGCCAACGGCTGTC
ACAGAGAGGAGCAGCAATTCTCGACAATGCCCATGTCAGCCGCCACCTAC
CTTGCGGGCCGCGCCGAGGCCATGGGAACCTGCTACAGAGTAGTTACTCC
AACCTCGATTGCTGAGGACTACATGGCAGCCGGTGTGCGCGCGCAGATCA
CTGCCAAGGCCCATCCGTCGGGCGTTTACCGCGTGGGTGTGTGCGAGGAC
GGCTACGCGAAGGGTGATGCCGAAAACCTCCGTGTTGCCGCTTTGGCAGC
TGAGTTCCGTGCCGGGCAGCAGTCTCCTAGTACCGTAACCGGTCAGCAGT
ATGAGTCTGCCCGCACGGCTCGCAAGCTGTACGCTAGCACTTGCCATCAC
GAAGAGACTCAAATCTTCGCGTACCCTGCCGTTGCAGCCGCCATGTGCCG
CGACTGA
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protein sequence of Gchil5912.t1

>Gchil5912.t1 ID=Gchil5912.t1|Name=Gchil5912.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MDAPAFAINGMFSAVKVRTSSFTANNVSPRTGTASPPAVTMAVDAFQKKF
QSFGKINIDYSRPKKLASFKRAGYPVSFDYPNSPAMAGHYSISNCNVPSA
CDKIFMKYDEYCAKGMMQVFKRSAVPFGTYTTKCTEGTVPQQAFAKRVFN
RTKAFRQAQKPISVRLAERYENRRLAFTMANGCHREEQQFSTMPMSAATY
LAGRAEAMGTCYRVVTPTSIAEDYMAAGVRAQITAKAHPSGVYRVGVCED
GYAKGDAENLRVAALAAEFRAGQQSPSTVTGQQYESARTARKLYASTCHH
EETQIFAYPAVAAAMCRD*
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mRNA from alignment at tig00025225_pilon:143095..144051-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5912.t1 ID=Gchil5912.t1|Name=Gchil5912.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00025225_pilon:143095..144051- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCCCCGCTTTTGCTATCAATGGAATGTTCTCGGCCGTCAAGGT
CCGCACGTCTTCCTTCACTGCCAACAATGTGTCACCTCGCACCGGCACCG
CTTCTCCGCCAGCCGTCACCATGGCGGTCGACGCCTTCCAGAAGAAGTTT
CAGAGCTTTGGAAAAATCAACATTGACTACTCGCGCCCGAAGAAACTAGC
CTCCTTCAAGCGAGCAGGCTACCCAGTCAGCTTTGACTACCCCAACTCCC
CCGCCATGGCCGGGCACTACTCAATCTCCAACTGCAATGTACCCAGCGCG
TGCGACAAAATTTTCATGAAGTACGACGAGTACTGCGCAAAAGGAATGAT
GCAAGTGTTCAAGCGTTCGGCTGTTCCATTCGGTACCTACACCACCAAGT
GCACCGAGGGCACCGTTCCGCAGCAAGCGTTTGCGAAGCGCGTGTTCAAC
CGTACCAAGGCATTCCGTCAGGCGCAGAAGCCAATTAGCGTACGTCTCGC
CGAGCGTTATGAAAACCGACGTCTTGCTTTCACTATGGCCAACGGCTGTC
ACAGAGAGGAGCAGCAATTCTCGACAATGCCCATGTCAGCCGCCACCTAC
CTTGCGGGCCGCGCCGAGGCCATGGGAACCTGCTACAGAGTAGTTACTCC
AACCTCGATTGCTGAGGACTACATGGCAGCCGGTGTGCGCGCGCAGATCA
CTGCCAAGGCCCATCCGTCGGGCGTTTACCGCGTGGGTGTGTGCGAGGAC
GGCTACGCGAAGGGTGATGCCGAAAACCTCCGTGTTGCCGCTTTGGCAGC
TGAGTTCCGTGCCGGGCAGCAGTCTCCTAGTACCGTAACCGGTCAGCAGT
ATGAGTCTGCCCGCACGGCTCGCAAGCTGTACGCTAGCACTTGCCATCAC
GAAGAGACTCAAATCTTCGCGTACCCTGCCGTTGCAGCCGCCATGTGCCG
CGACTGA
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Coding sequence (CDS) from alignment at tig00025225_pilon:143095..144051-

>Gchil5912.t1 ID=Gchil5912.t1|Name=Gchil5912.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00025225_pilon:143095..144051- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCCCCGCTTTTGCTATCAATGGAATGTTCTCGGCCGTCAAGGT
CCGCACGTCTTCCTTCACTGCCAACAATGTGTCACCTCGCACCGGCACCG
CTTCTCCGCCAGCCGTCACCATGGCGGTCGACGCCTTCCAGAAGAAGTTT
CAGAGCTTTGGAAAAATCAACATTGACTACTCGCGCCCGAAGAAACTAGC
CTCCTTCAAGCGAGCAGGCTACCCAGTCAGCTTTGACTACCCCAACTCCC
CCGCCATGGCCGGGCACTACTCAATCTCCAACTGCAATGTACCCAGCGCG
TGCGACAAAATTTTCATGAAGTACGACGAGTACTGCGCAAAAGGAATGAT
GCAAGTGTTCAAGCGTTCGGCTGTTCCATTCGGTACCTACACCACCAAGT
GCACCGAGGGCACCGTTCCGCAGCAAGCGTTTGCGAAGCGCGTGTTCAAC
CGTACCAAGGCATTCCGTCAGGCGCAGAAGCCAATTAGCGTACGTCTCGC
CGAGCGTTATGAAAACCGACGTCTTGCTTTCACTATGGCCAACGGCTGTC
ACAGAGAGGAGCAGCAATTCTCGACAATGCCCATGTCAGCCGCCACCTAC
CTTGCGGGCCGCGCCGAGGCCATGGGAACCTGCTACAGAGTAGTTACTCC
AACCTCGATTGCTGAGGACTACATGGCAGCCGGTGTGCGCGCGCAGATCA
CTGCCAAGGCCCATCCGTCGGGCGTTTACCGCGTGGGTGTGTGCGAGGAC
GGCTACGCGAAGGGTGATGCCGAAAACCTCCGTGTTGCCGCTTTGGCAGC
TGAGTTCCGTGCCGGGCAGCAGTCTCCTAGTACCGTAACCGGTCAGCAGT
ATGAGTCTGCCCGCACGGCTCGCAAGCTGTACGCTAGCACTTGCCATCAC
GAAGAGACTCAAATCTTCGCGTACCCTGCCGTTGCAGCCGCCATGTGCCG
CGACTGA
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