Gchil587.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil587.t1
Unique Name	Gchil587.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	314

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:401501..402442 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI3G19990.1
PFAMs	Memo
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06990
Evalue	2.8e-92
EggNOG OGs	COG1355@1\|root,KOG3086@2759\|Eukaryota,37M09@33090\|Viridiplantae,3GA5S@35493\|Streptophyta,3KS23@4447\|Liliopsida,3I6ZD@38820\|Poales
Description	Memo-like protein
COG category	S
BRITE	ko00000,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil587	Gchil587	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 401501..402442 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil587.t1.start1	Gchil587.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 401501..401503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil587.t1.CDS1	Gchil587.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 401501..402442 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil587.t1.exon1	Gchil587.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 401501..402442 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil587.t1.stop1	Gchil587.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 402440..402442 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil587.t1	Gchil587.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 401501..402442 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:401501..402442+
coding sequence from alignment at tig00004380_pilon:401501..402442+

mRNA sequence

>Gchil587.t1 ID=Gchil587.t1|Name=Gchil587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=314bp
MPPARPRRRRATHAGSWYDASPQKLSSSLLSWLRHAQSVLPSTNAAVAHA
IIAPHAGFSYSGSTAAFAYAAIDPRKFSRVIVLGPSHHVYMKDTCALSDA
HTLETPLGDLPVDRDVVEGLLASEHRSTRFVNMSAYNDEAEHSIEMHLPF
IRLVFADRDVKVVPIVVGSLSEDKERAFGSVLSTWIGDGETFFVVSSDFC
HWGSRFGYTTVDRESQHIWQSIEKLDREGMRCIESGDHASFCAYQRQTDN
TVCGRHPIGVLMSALAYCTSHSHRVFTTNFVRYKQSSRCMSMSDSSVSYA
SAVIRTMSDDHAA*

spliced messenger RNA

>Gchil587.t1 ID=Gchil587.t1|Name=Gchil587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00004380_pilon:401501..402442+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGGCCCGTCCCCGCCGTCGACGCGCCACTCACGCCGGTTCTTG
GTACGATGCCTCCCCCCAAAAGTTGAGCTCCTCCCTCTTGTCCTGGCTTC
GACACGCTCAGTCCGTGCTTCCGTCCACAAACGCCGCCGTCGCTCACGCC
ATCATCGCCCCGCACGCCGGCTTTTCCTACTCGGGTTCCACCGCCGCATT
CGCCTACGCCGCAATCGACCCCAGAAAGTTTTCGCGCGTTATCGTGCTGG
GGCCGAGCCATCATGTATACATGAAGGATACCTGTGCCCTTTCCGACGCT
CATACACTGGAGACGCCGCTGGGGGACCTGCCTGTCGATCGCGACGTCGT
CGAAGGTCTGCTGGCTTCCGAGCATCGATCCACCCGATTCGTAAACATGA
GCGCCTATAATGACGAGGCTGAGCATTCGATTGAAATGCATCTACCCTTC
ATTCGCTTAGTTTTTGCCGACCGCGATGTCAAAGTGGTACCAATTGTCGT
TGGTTCTTTGTCTGAGGACAAGGAGCGCGCTTTCGGCAGCGTGCTTTCCA
CCTGGATTGGCGATGGTGAAACTTTTTTCGTCGTGTCTTCCGATTTCTGT
CACTGGGGCTCCCGCTTTGGCTACACTACTGTGGATCGCGAATCGCAACA
TATATGGCAAAGCATAGAGAAACTTGACCGTGAGGGAATGCGTTGCATCG
AGTCTGGAGACCATGCCTCCTTCTGTGCGTATCAGCGCCAGACAGACAAC
ACTGTTTGTGGACGACATCCTATCGGGGTGCTCATGAGCGCCCTTGCATA
CTGCACTTCCCACTCGCACCGTGTGTTCACCACCAACTTTGTTCGGTACA
AGCAAAGTTCGCGCTGCATGTCCATGTCTGATTCGAGTGTCAGTTATGCT
AGTGCAGTCATTCGAACCATGTCTGACGACCATGCAGCCTAG

protein sequence of Gchil587.t1

>Gchil587.t1 ID=Gchil587.t1|Name=Gchil587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=314bp
MPPARPRRRRATHAGSWYDASPQKLSSSLLSWLRHAQSVLPSTNAAVAHA
IIAPHAGFSYSGSTAAFAYAAIDPRKFSRVIVLGPSHHVYMKDTCALSDA
HTLETPLGDLPVDRDVVEGLLASEHRSTRFVNMSAYNDEAEHSIEMHLPF
IRLVFADRDVKVVPIVVGSLSEDKERAFGSVLSTWIGDGETFFVVSSDFC
HWGSRFGYTTVDRESQHIWQSIEKLDREGMRCIESGDHASFCAYQRQTDN
TVCGRHPIGVLMSALAYCTSHSHRVFTTNFVRYKQSSRCMSMSDSSVSYA
SAVIRTMSDDHAA*

mRNA from alignment at tig00004380_pilon:401501..402442+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil587.t1 ID=Gchil587.t1|Name=Gchil587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00004380_pilon:401501..402442+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGGCCCGTCCCCGCCGTCGACGCGCCACTCACGCCGGTTCTTG
GTACGATGCCTCCCCCCAAAAGTTGAGCTCCTCCCTCTTGTCCTGGCTTC
GACACGCTCAGTCCGTGCTTCCGTCCACAAACGCCGCCGTCGCTCACGCC
ATCATCGCCCCGCACGCCGGCTTTTCCTACTCGGGTTCCACCGCCGCATT
CGCCTACGCCGCAATCGACCCCAGAAAGTTTTCGCGCGTTATCGTGCTGG
GGCCGAGCCATCATGTATACATGAAGGATACCTGTGCCCTTTCCGACGCT
CATACACTGGAGACGCCGCTGGGGGACCTGCCTGTCGATCGCGACGTCGT
CGAAGGTCTGCTGGCTTCCGAGCATCGATCCACCCGATTCGTAAACATGA
GCGCCTATAATGACGAGGCTGAGCATTCGATTGAAATGCATCTACCCTTC
ATTCGCTTAGTTTTTGCCGACCGCGATGTCAAAGTGGTACCAATTGTCGT
TGGTTCTTTGTCTGAGGACAAGGAGCGCGCTTTCGGCAGCGTGCTTTCCA
CCTGGATTGGCGATGGTGAAACTTTTTTCGTCGTGTCTTCCGATTTCTGT
CACTGGGGCTCCCGCTTTGGCTACACTACTGTGGATCGCGAATCGCAACA
TATATGGCAAAGCATAGAGAAACTTGACCGTGAGGGAATGCGTTGCATCG
AGTCTGGAGACCATGCCTCCTTCTGTGCGTATCAGCGCCAGACAGACAAC
ACTGTTTGTGGACGACATCCTATCGGGGTGCTCATGAGCGCCCTTGCATA
CTGCACTTCCCACTCGCACCGTGTGTTCACCACCAACTTTGTTCGGTACA
AGCAAAGTTCGCGCTGCATGTCCATGTCTGATTCGAGTGTCAGTTATGCT
AGTGCAGTCATTCGAACCATGTCTGACGACCATGCAGCCTAG

Coding sequence (CDS) from alignment at tig00004380_pilon:401501..402442+

>Gchil587.t1 ID=Gchil587.t1|Name=Gchil587.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00004380_pilon:401501..402442+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCCGGCCCGTCCCCGCCGTCGACGCGCCACTCACGCCGGTTCTTG
GTACGATGCCTCCCCCCAAAAGTTGAGCTCCTCCCTCTTGTCCTGGCTTC
GACACGCTCAGTCCGTGCTTCCGTCCACAAACGCCGCCGTCGCTCACGCC
ATCATCGCCCCGCACGCCGGCTTTTCCTACTCGGGTTCCACCGCCGCATT
CGCCTACGCCGCAATCGACCCCAGAAAGTTTTCGCGCGTTATCGTGCTGG
GGCCGAGCCATCATGTATACATGAAGGATACCTGTGCCCTTTCCGACGCT
CATACACTGGAGACGCCGCTGGGGGACCTGCCTGTCGATCGCGACGTCGT
CGAAGGTCTGCTGGCTTCCGAGCATCGATCCACCCGATTCGTAAACATGA
GCGCCTATAATGACGAGGCTGAGCATTCGATTGAAATGCATCTACCCTTC
ATTCGCTTAGTTTTTGCCGACCGCGATGTCAAAGTGGTACCAATTGTCGT
TGGTTCTTTGTCTGAGGACAAGGAGCGCGCTTTCGGCAGCGTGCTTTCCA
CCTGGATTGGCGATGGTGAAACTTTTTTCGTCGTGTCTTCCGATTTCTGT
CACTGGGGCTCCCGCTTTGGCTACACTACTGTGGATCGCGAATCGCAACA
TATATGGCAAAGCATAGAGAAACTTGACCGTGAGGGAATGCGTTGCATCG
AGTCTGGAGACCATGCCTCCTTCTGTGCGTATCAGCGCCAGACAGACAAC
ACTGTTTGTGGACGACATCCTATCGGGGTGCTCATGAGCGCCCTTGCATA
CTGCACTTCCCACTCGCACCGTGTGTTCACCACCAACTTTGTTCGGTACA
AGCAAAGTTCGCGCTGCATGTCCATGTCTGATTCGAGTGTCAGTTATGCT
AGTGCAGTCATTCGAACCATGTCTGACGACCATGCAGCCTAG