Gchil5805.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5805.t1
Unique NameGchil5805.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length579
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004449_piloncontigtig00004449_pilon:248685..250421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene4190
Preferred namecrtH
PFAMsAmino_oxidase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01960
KEGG koko:K09835
KEGG ReactionR07512
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Evalue2.77e-231
EggNOG OGsCOG1233@1|root,COG1233@2|Bacteria,1G0CP@1117|Cyanobacteria,3VJ3F@52604|Pleurocapsales
EC5.2.1.13
DescriptionPFAM FAD dependent oxidoreductase
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5805Gchil5805Gracilaria chilensis NLEC103_M9 malegenetig00004449_pilon 248685..250421 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5805.t1.stop1Gchil5805.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004449_pilon 248685..248687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5805.t1.CDS1Gchil5805.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004449_pilon 248685..250421 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5805.t1.exon1Gchil5805.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004449_pilon 248685..250421 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5805.t1.start1Gchil5805.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004449_pilon 250419..250421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5805.t1Gchil5805.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004449_pilon 248685..250421 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5805.t1 ID=Gchil5805.t1|Name=Gchil5805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=579bp
MVSLAFNSPLPYRLLPSRHTSTRKRFRDRLRATAQPVRAPALTRTGTKNV
DVVVIGSGIGALTAAADLASKGASVCVLEKYLIPGGSSGYFARDGYTFDA
GASMIFGFGKHGTTNLLTRALETVGRTLKTIPDPVQVRYHLPSINIRVHR
DYERFLDELIKLFPFEEEGIRNFYGECWNVFNALNAMPLRSLEEPNYLLR
VFLAHPLPCLNLLRYIARNAGDIARKHIKDEDLLRFIDVECYSWSVVPAD
LTPMINAGMVFSDRHYGGINYPVGGVGKISQELVRGIEDKPGCSVLYGSR
VTQILYSEGRANGVKLANGSEIRAKAVISNATRWDTFGEHGLVDAKHTPS
AEHRFRERYMKSPSFCSIHMAVRESDLGISMREEDGMDCHHIMLDAWNEL
ETARDGKGTLFVSIPTVLDKSLAPEGMHIFHVFTPSWMDEWQGLNSTEYK
KKKKAMLEIVVERLERTLFSGLKGAVDFAEVGSPKTHRRFLGRIDGSYGP
IARKKLRGLLSMPFNRTELDGLYCVGDSTFPGQGLNATAFSGFACGHRVA
ADLDLVSKLPGPLDSFLTDLLSKRRLRL*
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spliced messenger RNA

>Gchil5805.t1 ID=Gchil5805.t1|Name=Gchil5805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00004449_pilon:248685..250421- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCACTCGCATTCAACTCACCTCTACCGTACCGTCTTCTGCCGAG
CCGGCATACATCAACGAGAAAGCGTTTCAGAGACCGATTGCGGGCAACTG
CTCAGCCTGTCCGCGCCCCAGCACTTACAAGAACAGGAACTAAGAATGTA
GACGTTGTTGTCATAGGTTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAGGGAGCATCGGTTTGTGTTCTTGAAAAGTACCTTATCC
CTGGAGGTTCGTCTGGATACTTCGCTCGCGATGGATACACTTTCGATGCT
GGGGCTTCAATGATTTTTGGATTTGGGAAACACGGTACTACCAACTTGTT
GACTCGGGCACTCGAAACCGTAGGCCGCACATTGAAGACAATCCCTGACC
CTGTGCAGGTGAGATACCATCTGCCAAGTATCAACATCCGAGTTCATCGT
GACTACGAACGCTTTCTCGATGAACTTATCAAACTCTTTCCTTTTGAAGA
AGAGGGTATTAGAAATTTCTACGGCGAATGTTGGAACGTATTTAACGCGC
TTAATGCCATGCCATTACGTTCTTTGGAGGAGCCCAATTATCTACTTCGT
GTCTTTCTTGCACACCCTCTACCATGTTTAAATCTTCTCCGCTACATCGC
CCGCAACGCCGGAGATATAGCACGAAAACACATCAAGGACGAAGACCTCT
TGCGCTTCATTGACGTAGAATGTTATTCCTGGAGTGTGGTGCCAGCGGAC
TTGACGCCTATGATCAACGCTGGCATGGTATTTTCAGATCGCCACTATGG
AGGGATCAACTATCCTGTGGGCGGTGTGGGAAAGATTTCGCAAGAGCTTG
TGCGAGGCATTGAAGACAAACCTGGATGCAGCGTGCTGTATGGGTCACGA
GTGACTCAAATTTTGTATTCGGAAGGACGCGCCAATGGTGTCAAGCTGGC
GAACGGTAGCGAAATTAGAGCAAAGGCCGTGATTAGCAACGCGACTAGAT
GGGACACGTTTGGTGAGCACGGCTTAGTTGATGCAAAGCACACACCGAGC
GCCGAACATCGCTTCCGGGAACGATACATGAAAAGCCCTAGCTTCTGCTC
AATACACATGGCAGTGAGGGAATCTGACCTTGGTATAAGTATGCGCGAAG
AGGACGGAATGGACTGTCACCATATCATGCTCGATGCCTGGAATGAATTA
GAGACAGCCCGTGATGGAAAAGGTACCTTATTTGTTTCGATCCCAACGGT
GCTTGATAAATCACTCGCACCGGAAGGTATGCACATATTTCACGTGTTCA
CGCCAAGTTGGATGGACGAGTGGCAAGGGCTTAATAGTACGGAGTACAAG
AAGAAGAAAAAAGCGATGCTGGAAATTGTCGTGGAACGGCTAGAGCGAAC
CCTATTTTCTGGGCTAAAGGGAGCCGTAGATTTTGCAGAGGTGGGATCAC
CCAAGACGCATCGTCGTTTCTTGGGAAGAATCGACGGCTCTTATGGACCA
ATTGCTAGAAAGAAGCTCAGGGGCCTTCTTAGTATGCCTTTCAATCGTAC
TGAGTTGGATGGCTTGTATTGTGTGGGTGACTCTACATTCCCGGGTCAGG
GATTGAACGCCACTGCGTTTTCTGGATTTGCCTGTGGGCATAGGGTTGCA
GCTGACTTAGACTTAGTGAGCAAGCTCCCTGGCCCTTTGGATTCCTTCTT
AACGGACTTGCTCTCTAAACGAAGACTACGTCTATAG
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protein sequence of Gchil5805.t1

>Gchil5805.t1 ID=Gchil5805.t1|Name=Gchil5805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=579bp
MVSLAFNSPLPYRLLPSRHTSTRKRFRDRLRATAQPVRAPALTRTGTKNV
DVVVIGSGIGALTAAADLASKGASVCVLEKYLIPGGSSGYFARDGYTFDA
GASMIFGFGKHGTTNLLTRALETVGRTLKTIPDPVQVRYHLPSINIRVHR
DYERFLDELIKLFPFEEEGIRNFYGECWNVFNALNAMPLRSLEEPNYLLR
VFLAHPLPCLNLLRYIARNAGDIARKHIKDEDLLRFIDVECYSWSVVPAD
LTPMINAGMVFSDRHYGGINYPVGGVGKISQELVRGIEDKPGCSVLYGSR
VTQILYSEGRANGVKLANGSEIRAKAVISNATRWDTFGEHGLVDAKHTPS
AEHRFRERYMKSPSFCSIHMAVRESDLGISMREEDGMDCHHIMLDAWNEL
ETARDGKGTLFVSIPTVLDKSLAPEGMHIFHVFTPSWMDEWQGLNSTEYK
KKKKAMLEIVVERLERTLFSGLKGAVDFAEVGSPKTHRRFLGRIDGSYGP
IARKKLRGLLSMPFNRTELDGLYCVGDSTFPGQGLNATAFSGFACGHRVA
ADLDLVSKLPGPLDSFLTDLLSKRRLRL*
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mRNA from alignment at tig00004449_pilon:248685..250421-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5805.t1 ID=Gchil5805.t1|Name=Gchil5805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at tig00004449_pilon:248685..250421- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCACTCGCATTCAACTCACCTCTACCGTACCGTCTTCTGCCGAG
CCGGCATACATCAACGAGAAAGCGTTTCAGAGACCGATTGCGGGCAACTG
CTCAGCCTGTCCGCGCCCCAGCACTTACAAGAACAGGAACTAAGAATGTA
GACGTTGTTGTCATAGGTTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAGGGAGCATCGGTTTGTGTTCTTGAAAAGTACCTTATCC
CTGGAGGTTCGTCTGGATACTTCGCTCGCGATGGATACACTTTCGATGCT
GGGGCTTCAATGATTTTTGGATTTGGGAAACACGGTACTACCAACTTGTT
GACTCGGGCACTCGAAACCGTAGGCCGCACATTGAAGACAATCCCTGACC
CTGTGCAGGTGAGATACCATCTGCCAAGTATCAACATCCGAGTTCATCGT
GACTACGAACGCTTTCTCGATGAACTTATCAAACTCTTTCCTTTTGAAGA
AGAGGGTATTAGAAATTTCTACGGCGAATGTTGGAACGTATTTAACGCGC
TTAATGCCATGCCATTACGTTCTTTGGAGGAGCCCAATTATCTACTTCGT
GTCTTTCTTGCACACCCTCTACCATGTTTAAATCTTCTCCGCTACATCGC
CCGCAACGCCGGAGATATAGCACGAAAACACATCAAGGACGAAGACCTCT
TGCGCTTCATTGACGTAGAATGTTATTCCTGGAGTGTGGTGCCAGCGGAC
TTGACGCCTATGATCAACGCTGGCATGGTATTTTCAGATCGCCACTATGG
AGGGATCAACTATCCTGTGGGCGGTGTGGGAAAGATTTCGCAAGAGCTTG
TGCGAGGCATTGAAGACAAACCTGGATGCAGCGTGCTGTATGGGTCACGA
GTGACTCAAATTTTGTATTCGGAAGGACGCGCCAATGGTGTCAAGCTGGC
GAACGGTAGCGAAATTAGAGCAAAGGCCGTGATTAGCAACGCGACTAGAT
GGGACACGTTTGGTGAGCACGGCTTAGTTGATGCAAAGCACACACCGAGC
GCCGAACATCGCTTCCGGGAACGATACATGAAAAGCCCTAGCTTCTGCTC
AATACACATGGCAGTGAGGGAATCTGACCTTGGTATAAGTATGCGCGAAG
AGGACGGAATGGACTGTCACCATATCATGCTCGATGCCTGGAATGAATTA
GAGACAGCCCGTGATGGAAAAGGTACCTTATTTGTTTCGATCCCAACGGT
GCTTGATAAATCACTCGCACCGGAAGGTATGCACATATTTCACGTGTTCA
CGCCAAGTTGGATGGACGAGTGGCAAGGGCTTAATAGTACGGAGTACAAG
AAGAAGAAAAAAGCGATGCTGGAAATTGTCGTGGAACGGCTAGAGCGAAC
CCTATTTTCTGGGCTAAAGGGAGCCGTAGATTTTGCAGAGGTGGGATCAC
CCAAGACGCATCGTCGTTTCTTGGGAAGAATCGACGGCTCTTATGGACCA
ATTGCTAGAAAGAAGCTCAGGGGCCTTCTTAGTATGCCTTTCAATCGTAC
TGAGTTGGATGGCTTGTATTGTGTGGGTGACTCTACATTCCCGGGTCAGG
GATTGAACGCCACTGCGTTTTCTGGATTTGCCTGTGGGCATAGGGTTGCA
GCTGACTTAGACTTAGTGAGCAAGCTCCCTGGCCCTTTGGATTCCTTCTT
AACGGACTTGCTCTCTAAACGAAGACTACGTCTATAG
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Coding sequence (CDS) from alignment at tig00004449_pilon:248685..250421-

>Gchil5805.t1 ID=Gchil5805.t1|Name=Gchil5805.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1737bp|location=Sequence derived from alignment at tig00004449_pilon:248685..250421- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCACTCGCATTCAACTCACCTCTACCGTACCGTCTTCTGCCGAG
CCGGCATACATCAACGAGAAAGCGTTTCAGAGACCGATTGCGGGCAACTG
CTCAGCCTGTCCGCGCCCCAGCACTTACAAGAACAGGAACTAAGAATGTA
GACGTTGTTGTCATAGGTTCTGGGATTGGAGCTCTCACTGCCGCTGCAGA
CCTTGCTTCCAAGGGAGCATCGGTTTGTGTTCTTGAAAAGTACCTTATCC
CTGGAGGTTCGTCTGGATACTTCGCTCGCGATGGATACACTTTCGATGCT
GGGGCTTCAATGATTTTTGGATTTGGGAAACACGGTACTACCAACTTGTT
GACTCGGGCACTCGAAACCGTAGGCCGCACATTGAAGACAATCCCTGACC
CTGTGCAGGTGAGATACCATCTGCCAAGTATCAACATCCGAGTTCATCGT
GACTACGAACGCTTTCTCGATGAACTTATCAAACTCTTTCCTTTTGAAGA
AGAGGGTATTAGAAATTTCTACGGCGAATGTTGGAACGTATTTAACGCGC
TTAATGCCATGCCATTACGTTCTTTGGAGGAGCCCAATTATCTACTTCGT
GTCTTTCTTGCACACCCTCTACCATGTTTAAATCTTCTCCGCTACATCGC
CCGCAACGCCGGAGATATAGCACGAAAACACATCAAGGACGAAGACCTCT
TGCGCTTCATTGACGTAGAATGTTATTCCTGGAGTGTGGTGCCAGCGGAC
TTGACGCCTATGATCAACGCTGGCATGGTATTTTCAGATCGCCACTATGG
AGGGATCAACTATCCTGTGGGCGGTGTGGGAAAGATTTCGCAAGAGCTTG
TGCGAGGCATTGAAGACAAACCTGGATGCAGCGTGCTGTATGGGTCACGA
GTGACTCAAATTTTGTATTCGGAAGGACGCGCCAATGGTGTCAAGCTGGC
GAACGGTAGCGAAATTAGAGCAAAGGCCGTGATTAGCAACGCGACTAGAT
GGGACACGTTTGGTGAGCACGGCTTAGTTGATGCAAAGCACACACCGAGC
GCCGAACATCGCTTCCGGGAACGATACATGAAAAGCCCTAGCTTCTGCTC
AATACACATGGCAGTGAGGGAATCTGACCTTGGTATAAGTATGCGCGAAG
AGGACGGAATGGACTGTCACCATATCATGCTCGATGCCTGGAATGAATTA
GAGACAGCCCGTGATGGAAAAGGTACCTTATTTGTTTCGATCCCAACGGT
GCTTGATAAATCACTCGCACCGGAAGGTATGCACATATTTCACGTGTTCA
CGCCAAGTTGGATGGACGAGTGGCAAGGGCTTAATAGTACGGAGTACAAG
AAGAAGAAAAAAGCGATGCTGGAAATTGTCGTGGAACGGCTAGAGCGAAC
CCTATTTTCTGGGCTAAAGGGAGCCGTAGATTTTGCAGAGGTGGGATCAC
CCAAGACGCATCGTCGTTTCTTGGGAAGAATCGACGGCTCTTATGGACCA
ATTGCTAGAAAGAAGCTCAGGGGCCTTCTTAGTATGCCTTTCAATCGTAC
TGAGTTGGATGGCTTGTATTGTGTGGGTGACTCTACATTCCCGGGTCAGG
GATTGAACGCCACTGCGTTTTCTGGATTTGCCTGTGGGCATAGGGTTGCA
GCTGACTTAGACTTAGTGAGCAAGCTCCCTGGCCCTTTGGATTCCTTCTT
AACGGACTTGCTCTCTAAACGAAGACTACGTCTATAG
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