Gchil5801.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5801.t1
Unique NameGchil5801.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length719
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004449_piloncontigtig00004449_pilon:236367..238682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS469CT
PFAMsPkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K04419
KEGG Pathwayko04010,ko04932,map04010,map04932
KEGG ModuleM00688,M00689
Evalue6.56e-79
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.11.25
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5801Gchil5801Gracilaria chilensis NLEC103_M9 malegenetig00004449_pilon 236367..238682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1Gchil5801.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004449_pilon 236367..238682 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1.stop1Gchil5801.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004449_pilon 236367..236369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1.CDS1Gchil5801.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004449_pilon 236367..236913 -
Gchil5801.t1.CDS2Gchil5801.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004449_pilon 236984..237069 -
Gchil5801.t1.CDS3Gchil5801.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004449_pilon 237159..238682 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1.exon1Gchil5801.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004449_pilon 236367..236913 -
Gchil5801.t1.exon2Gchil5801.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004449_pilon 236984..237069 -
Gchil5801.t1.exon3Gchil5801.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004449_pilon 237159..238682 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1.intron1Gchil5801.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004449_pilon 236914..236983 -
Gchil5801.t1.intron2Gchil5801.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004449_pilon 237070..237158 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5801.t1.start1Gchil5801.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004449_pilon 238680..238682 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5801.t1 ID=Gchil5801.t1|Name=Gchil5801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=719bp
MNLNEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDNEDHEFVLTV
FGRERAGLLADLTDYLESISLGVKQANIYSFPNGAVMDQFSLSDPNRLLL
EDDMLISIHDTLAKLIGNDGASLSQRARLRLHFENHSPQAKDSLYNYALM
QHRVPITLLAPRFAPRSSIVQRTWSNIALTEMVEEQRQEIERQRCQSEAI
TADFVHHALSSLREGEFLYHYSTDTRYRHKFNVSEDHQYLYWGDSCAARL
NGYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLISNPTSHSATNVNTIDLV
CVSVDQLNRWLLGLQSLCNPHNRQLLHRITLDDITRFRVIYKIRAHAHAR
GLTVRRYVLKRVAEAGQRRSSADANRAQVDEVRQLEAELARLHKTLIDYA
RRETMLNTSLKDFQVSWEVKVDDVTLVNPIGRGAFSEMWKGLWRSTPVAV
KKLTTRTVVGDVLNDPPLYNQPHELWATSDDALVQSGISPEDKAMLRDFR
LEVSMLNKLICSVEKAIMETMFVITELAKCREAYRARPVEEGCPVVKVAD
FGLSRQFRGVGTVTGSVAGIMTSETGTYRWMAPEMIRHEPYNEKVDVYSF
GVVLWELFSCEIPFAGMTPVQAAFAVADKHLRPKAESEYGRRVQIPAAWS
ALIDRCWHRDSHERPRFHEIIQVLDEMDCSSEGLTGSVEGDPGTSKDEPR
EMGNDTDKDSEARCLQIP*
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spliced messenger RNA

>Gchil5801.t1 ID=Gchil5801.t1|Name=Gchil5801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00004449_pilon:236367..238682- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCTCAACGAATTCTCCACGCCCCTGCCGAACGGGATCACCGTTCA
TCACCTCGAATTGCATAATCTTTCCGTGAGAGAGCAGCGACCGATTATCG
AGTTTGAGTGTACTGGTGATAATGAGGACCACGAGTTTGTGCTCACCGTG
TTCGGTCGCGAACGCGCTGGTTTGCTGGCCGATCTTACCGACTACCTCGA
GTCCATCTCGCTCGGGGTCAAACAAGCCAACATATACTCTTTTCCGAATG
GCGCCGTTATGGACCAATTCTCTCTTTCCGATCCGAACCGATTACTGCTT
GAAGATGACATGCTCATCAGCATTCATGATACGCTCGCAAAGCTTATTGG
CAATGATGGTGCATCGTTATCGCAACGTGCTCGGCTCCGATTGCACTTCG
AAAACCACTCACCGCAGGCAAAAGACTCTCTTTACAACTATGCCCTGATG
CAACACCGCGTTCCTATCACTTTGCTTGCGCCCCGATTCGCACCGCGTTC
CTCTATTGTGCAGAGAACATGGTCGAATATCGCTCTTACTGAGATGGTTG
AGGAACAACGGCAAGAGATCGAGAGACAGCGCTGCCAAAGCGAGGCAATA
ACTGCCGATTTCGTGCACCATGCCTTATCATCTCTGCGGGAGGGTGAATT
TTTATATCATTACTCGACTGATACGCGGTACCGACACAAGTTCAACGTTT
CAGAAGACCATCAGTATTTGTACTGGGGTGATTCTTGCGCTGCTCGTCTC
AATGGATATGCAGGCGTCTTGTTCGGTCCCAAGTCTGCCGTCTTTCAAGA
TCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTATGTTTTTCGCTTATTA
GTAACCCAACCAGCCATTCTGCAACAAATGTGAACACTATTGACCTCGTT
TGTGTATCCGTTGACCAGTTGAATCGATGGTTGCTCGGGCTCCAGTCTTT
ATGTAACCCACATAATCGCCAACTGTTACATCGTATCACTCTCGATGATA
TCACCAGGTTTCGTGTTATCTATAAGATTCGAGCACATGCGCACGCGAGG
GGATTGACTGTTCGACGATATGTTTTAAAGAGAGTCGCTGAAGCTGGACA
GAGGAGAAGCTCTGCCGACGCAAATCGTGCGCAAGTGGATGAGGTACGTC
AGCTTGAGGCTGAGTTGGCACGTTTGCACAAGACGCTGATTGATTATGCA
CGTCGAGAAACAATGTTGAACACATCGCTCAAAGATTTTCAGGTTTCTTG
GGAGGTCAAAGTCGATGATGTAACACTCGTAAATCCTATCGGCCGTGGCG
CATTTTCGGAAATGTGGAAAGGTTTGTGGCGTTCTACACCTGTTGCGGTG
AAGAAGCTTACGACGAGGACCGTTGTGGGCGATGTTTTAAATGACCCCCC
TCTCTATAATCAGCCACACGAGCTTTGGGCCACCTCAGATGATGCCCTAG
TGCAGTCTGGTATATCTCCGGAAGACAAGGCGATGTTGAGAGACTTTCGT
CTTGAAGTTTCGATGTTGAATAAGCTTATTTGCAGCGTTGAGAAAGCGAT
CATGGAGACAATGTTTGTCATTACAGAACTTGCGAAATGTCGCGAAGCAT
ATCGCGCGCGGCCTGTGGAAGAAGGGTGTCCCGTTGTGAAAGTGGCTGAC
TTTGGGTTGAGTAGACAGTTCAGAGGAGTAGGAACCGTGACTGGCTCGGT
GGCAGGGATTATGACTAGTGAAACGGGGACATATCGCTGGATGGCACCCG
AAATGATCCGCCACGAACCTTACAATGAGAAAGTGGATGTATATTCCTTT
GGTGTGGTGTTATGGGAGTTGTTCTCATGTGAAATTCCGTTTGCCGGAAT
GACGCCCGTACAAGCGGCTTTTGCGGTTGCTGATAAGCACCTCCGACCGA
AAGCGGAGTCAGAATATGGCAGACGAGTGCAGATACCAGCCGCATGGTCA
GCGCTTATTGATCGTTGTTGGCACCGTGACTCTCATGAACGGCCACGTTT
TCATGAGATCATACAAGTCCTTGATGAAATGGATTGCTCTTCTGAGGGCT
TAACTGGATCGGTGGAGGGAGACCCAGGTACAAGCAAAGATGAACCAAGA
GAAATGGGGAACGATACAGATAAAGATTCCGAAGCAAGATGCTTGCAAAT
CCCATGA
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protein sequence of Gchil5801.t1

>Gchil5801.t1 ID=Gchil5801.t1|Name=Gchil5801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=719bp
MNLNEFSTPLPNGITVHHLELHNLSVREQRPIIEFECTGDNEDHEFVLTV
FGRERAGLLADLTDYLESISLGVKQANIYSFPNGAVMDQFSLSDPNRLLL
EDDMLISIHDTLAKLIGNDGASLSQRARLRLHFENHSPQAKDSLYNYALM
QHRVPITLLAPRFAPRSSIVQRTWSNIALTEMVEEQRQEIERQRCQSEAI
TADFVHHALSSLREGEFLYHYSTDTRYRHKFNVSEDHQYLYWGDSCAARL
NGYAGVLFGPKSAVFQDLGPRLVDPEWLCFSLISNPTSHSATNVNTIDLV
CVSVDQLNRWLLGLQSLCNPHNRQLLHRITLDDITRFRVIYKIRAHAHAR
GLTVRRYVLKRVAEAGQRRSSADANRAQVDEVRQLEAELARLHKTLIDYA
RRETMLNTSLKDFQVSWEVKVDDVTLVNPIGRGAFSEMWKGLWRSTPVAV
KKLTTRTVVGDVLNDPPLYNQPHELWATSDDALVQSGISPEDKAMLRDFR
LEVSMLNKLICSVEKAIMETMFVITELAKCREAYRARPVEEGCPVVKVAD
FGLSRQFRGVGTVTGSVAGIMTSETGTYRWMAPEMIRHEPYNEKVDVYSF
GVVLWELFSCEIPFAGMTPVQAAFAVADKHLRPKAESEYGRRVQIPAAWS
ALIDRCWHRDSHERPRFHEIIQVLDEMDCSSEGLTGSVEGDPGTSKDEPR
EMGNDTDKDSEARCLQIP*
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mRNA from alignment at tig00004449_pilon:236367..238682-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5801.t1 ID=Gchil5801.t1|Name=Gchil5801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2316bp|location=Sequence derived from alignment at tig00004449_pilon:236367..238682- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTCAACGAATTCTCCACGCCCCTGCCGAACGGGATCACCGTTCA
TCACCTCGAATTGCATAATCTTTCCGTGAGAGAGCAGCGACCGATTATCG
AGTTTGAGTGTACTGGTGATAATGAGGACCACGAGTTTGTGCTCACCGTG
TTCGGTCGCGAACGCGCTGGTTTGCTGGCCGATCTTACCGACTACCTCGA
GTCCATCTCGCTCGGGGTCAAACAAGCCAACATATACTCTTTTCCGAATG
GCGCCGTTATGGACCAATTCTCTCTTTCCGATCCGAACCGATTACTGCTT
GAAGATGACATGCTCATCAGCATTCATGATACGCTCGCAAAGCTTATTGG
CAATGATGGTGCATCGTTATCGCAACGTGCTCGGCTCCGATTGCACTTCG
AAAACCACTCACCGCAGGCAAAAGACTCTCTTTACAACTATGCCCTGATG
CAACACCGCGTTCCTATCACTTTGCTTGCGCCCCGATTCGCACCGCGTTC
CTCTATTGTGCAGAGAACATGGTCGAATATCGCTCTTACTGAGATGGTTG
AGGAACAACGGCAAGAGATCGAGAGACAGCGCTGCCAAAGCGAGGCAATA
ACTGCCGATTTCGTGCACCATGCCTTATCATCTCTGCGGGAGGGTGAATT
TTTATATCATTACTCGACTGATACGCGGTACCGACACAAGTTCAACGTTT
CAGAAGACCATCAGTATTTGTACTGGGGTGATTCTTGCGCTGCTCGTCTC
AATGGATATGCAGGCGTCTTGTTCGGTCCCAAGTCTGCCGTCTTTCAAGA
TCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTATGTTTTTCGCTTATTA
GTAACCCAACCAGCCATTCTGCAACAAATGTGAACACTATTGACCTCGTT
TGTGTATCCGTTGACCAGTTGAATCGATGGTTGCTCGGGCTCCAGTCTTT
ATGTAACCCACATAATCGCCAACTGTTACATCGTATCACTCTCGATGATA
TCACCAGGTTTCGTGTTATCTATAAGATTCGAGCACATGCGCACGCGAGG
GGATTGACTGTTCGACGATATGTTTTAAAGAGAGTCGCTGAAGCTGGACA
GAGGAGAAGCTCTGCCGACGCAAATCGTGCGCAAGTGGATGAGGTACGTC
AGCTTGAGGCTGAGTTGGCACGTTTGCACAAGACGCTGATTGATTATGCA
CGTCGAGAAACAATGTTGAACACATCGCTCAAAGATTTTCAGGTTTCTTG
GGAGGTCAAAGTCGATGATGTAACACTCGTAAATCCTATCGGCCGTGGCG
CATTTTCGGAAATGTGGAAAGGTTTGTGGCGTTCTACACCTGTTGCGGTG
AAGAAGCTTACGACGAGGACCGTTGTGGGCGATGTTTTAAATGACCCCCC
TCTCTATAATCAGCCACACGAGCTTTGGGCCACCTCAGATGATGCCCTAG
TGCAGTCTGGTATATCTCCGGAAGACAAGGCGATGTTGAGAGACTTTCGT
CTTGAAGTTTCGATGTTGAATAAGGTGAGGCATCCGAACATTGTTCTTTT
TCTCGGTGCTTGCACGGTACCACCGCAGCTTTGCATTTTGACTGAGTTTT
GTTATGGTGGCAGCTTATTTGCAGCGTTGAGAAAGCGATCATGGAGACAA
TGTTTGTCATTACAGAACTTGCGAAATGTCGCGAAGCATATCGCGCGCGG
TATGAGGTATCTGCATTCCTGTCACATCATTCATCGAGATTTGAAGTCTC
AAAATCTCCTCCTCGACAGGCCTGTGGAAGAAGGGTGTCCCGTTGTGAAA
GTGGCTGACTTTGGGTTGAGTAGACAGTTCAGAGGAGTAGGAACCGTGAC
TGGCTCGGTGGCAGGGATTATGACTAGTGAAACGGGGACATATCGCTGGA
TGGCACCCGAAATGATCCGCCACGAACCTTACAATGAGAAAGTGGATGTA
TATTCCTTTGGTGTGGTGTTATGGGAGTTGTTCTCATGTGAAATTCCGTT
TGCCGGAATGACGCCCGTACAAGCGGCTTTTGCGGTTGCTGATAAGCACC
TCCGACCGAAAGCGGAGTCAGAATATGGCAGACGAGTGCAGATACCAGCC
GCATGGTCAGCGCTTATTGATCGTTGTTGGCACCGTGACTCTCATGAACG
GCCACGTTTTCATGAGATCATACAAGTCCTTGATGAAATGGATTGCTCTT
CTGAGGGCTTAACTGGATCGGTGGAGGGAGACCCAGGTACAAGCAAAGAT
GAACCAAGAGAAATGGGGAACGATACAGATAAAGATTCCGAAGCAAGATG
CTTGCAAATCCCATGA
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Coding sequence (CDS) from alignment at tig00004449_pilon:236367..238682-

>Gchil5801.t1 ID=Gchil5801.t1|Name=Gchil5801.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00004449_pilon:236367..238682- (Gracilaria chilensis NLEC103_M9 male)
ATGAATCTCAACGAATTCTCCACGCCCCTGCCGAACGGGATCACCGTTCA
TCACCTCGAATTGCATAATCTTTCCGTGAGAGAGCAGCGACCGATTATCG
AGTTTGAGTGTACTGGTGATAATGAGGACCACGAGTTTGTGCTCACCGTG
TTCGGTCGCGAACGCGCTGGTTTGCTGGCCGATCTTACCGACTACCTCGA
GTCCATCTCGCTCGGGGTCAAACAAGCCAACATATACTCTTTTCCGAATG
GCGCCGTTATGGACCAATTCTCTCTTTCCGATCCGAACCGATTACTGCTT
GAAGATGACATGCTCATCAGCATTCATGATACGCTCGCAAAGCTTATTGG
CAATGATGGTGCATCGTTATCGCAACGTGCTCGGCTCCGATTGCACTTCG
AAAACCACTCACCGCAGGCAAAAGACTCTCTTTACAACTATGCCCTGATG
CAACACCGCGTTCCTATCACTTTGCTTGCGCCCCGATTCGCACCGCGTTC
CTCTATTGTGCAGAGAACATGGTCGAATATCGCTCTTACTGAGATGGTTG
AGGAACAACGGCAAGAGATCGAGAGACAGCGCTGCCAAAGCGAGGCAATA
ACTGCCGATTTCGTGCACCATGCCTTATCATCTCTGCGGGAGGGTGAATT
TTTATATCATTACTCGACTGATACGCGGTACCGACACAAGTTCAACGTTT
CAGAAGACCATCAGTATTTGTACTGGGGTGATTCTTGCGCTGCTCGTCTC
AATGGATATGCAGGCGTCTTGTTCGGTCCCAAGTCTGCCGTCTTTCAAGA
TCTGGGTCCCAGACTTGTTGATCCAGAGTGGCTATGTTTTTCGCTTATTA
GTAACCCAACCAGCCATTCTGCAACAAATGTGAACACTATTGACCTCGTT
TGTGTATCCGTTGACCAGTTGAATCGATGGTTGCTCGGGCTCCAGTCTTT
ATGTAACCCACATAATCGCCAACTGTTACATCGTATCACTCTCGATGATA
TCACCAGGTTTCGTGTTATCTATAAGATTCGAGCACATGCGCACGCGAGG
GGATTGACTGTTCGACGATATGTTTTAAAGAGAGTCGCTGAAGCTGGACA
GAGGAGAAGCTCTGCCGACGCAAATCGTGCGCAAGTGGATGAGGTACGTC
AGCTTGAGGCTGAGTTGGCACGTTTGCACAAGACGCTGATTGATTATGCA
CGTCGAGAAACAATGTTGAACACATCGCTCAAAGATTTTCAGGTTTCTTG
GGAGGTCAAAGTCGATGATGTAACACTCGTAAATCCTATCGGCCGTGGCG
CATTTTCGGAAATGTGGAAAGGTTTGTGGCGTTCTACACCTGTTGCGGTG
AAGAAGCTTACGACGAGGACCGTTGTGGGCGATGTTTTAAATGACCCCCC
TCTCTATAATCAGCCACACGAGCTTTGGGCCACCTCAGATGATGCCCTAG
TGCAGTCTGGTATATCTCCGGAAGACAAGGCGATGTTGAGAGACTTTCGT
CTTGAAGTTTCGATGTTGAATAAGCTTATTTGCAGCGTTGAGAAAGCGAT
CATGGAGACAATGTTTGTCATTACAGAACTTGCGAAATGTCGCGAAGCAT
ATCGCGCGCGGCCTGTGGAAGAAGGGTGTCCCGTTGTGAAAGTGGCTGAC
TTTGGGTTGAGTAGACAGTTCAGAGGAGTAGGAACCGTGACTGGCTCGGT
GGCAGGGATTATGACTAGTGAAACGGGGACATATCGCTGGATGGCACCCG
AAATGATCCGCCACGAACCTTACAATGAGAAAGTGGATGTATATTCCTTT
GGTGTGGTGTTATGGGAGTTGTTCTCATGTGAAATTCCGTTTGCCGGAAT
GACGCCCGTACAAGCGGCTTTTGCGGTTGCTGATAAGCACCTCCGACCGA
AAGCGGAGTCAGAATATGGCAGACGAGTGCAGATACCAGCCGCATGGTCA
GCGCTTATTGATCGTTGTTGGCACCGTGACTCTCATGAACGGCCACGTTT
TCATGAGATCATACAAGTCCTTGATGAAATGGATTGCTCTTCTGAGGGCT
TAACTGGATCGGTGGAGGGAGACCCAGGTACAAGCAAAGATGAACCAAGA
GAAATGGGGAACGATACAGATAAAGATTCCGAAGCAAGATGCTTGCAAAT
CCCATGA
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