Gchil580.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil580.t1
Unique NameGchil580.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:382462..383508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil580Gchil580Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 382462..383508 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil580.t1.start1Gchil580.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 382462..382464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil580.t1.CDS1Gchil580.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 382462..383508 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil580.t1.exon1Gchil580.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 382462..383508 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil580.t1.stop1Gchil580.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 383506..383508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil580.t1Gchil580.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 382462..383508 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil580.t1 ID=Gchil580.t1|Name=Gchil580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=349bp
MQVRATNVAPSKIAASSRKAFATGAGGGAGGGAGGDDGALPETEAKLTCQ
NVRSVLKAFAQADNVAVASWLLANPAQQFHHSSELSTWAFDSSLAIHAEQ
RLTNMNGTWPTPEEGMQFVGGSAEGAEPGKDLLLVPVRLFGAKLVGYSFG
GAGEVGRKDFCPYGAPTNAFVPHYVGRFSFDVANNDLLIIAHNATPNATV
IISVRGGTRRERALYVVPPAAYDQHKLPSRVLSLTFGTERREDWQPKYQF
AVGAEGEGEWRWMVEALARLERMLKGRFVCDNMRRDDMDQLSGEVLNRRT
AATESVFDVKDAVSTRVFRDMATRCYFSYMARVIGARAAPATQVNSLP*
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spliced messenger RNA

>Gchil580.t1 ID=Gchil580.t1|Name=Gchil580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004380_pilon:382462..383508+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTACGAGCCACCAATGTCGCGCCATCCAAGATAGCTGCTTCGTC
GAGAAAAGCGTTTgcgacgggtgctggcggcggtgctggcggcggcgctg
gcggcgacgatggcgCCTTGCCCGAGACCGAGGCCAAGCTCACCTGTCAG
AACGTGCGCAGCGTGTTGAAGGCCTTCGCCCAGGCAGACAATGTAGCCGT
GGCATCGTGGTTACTTGCCAACCCCGCGCAACAATTCCATCACAGCTCGG
AGTTGTCTACCTGGGCGTTTGACTCGTCGCTGGCCATTCATGCTGAGCAG
CGTCTCACAAACATGAACGGCACATGGCCGACACCGGAGGAGGGAATGCA
GTTTGTTGGGGGTTCGGCGGAGGGAGCGGAACCGGGCAAGGACCTGTTGC
TGGTCCCCGTGCGTCTATTTGGCGCCAAGCTGGTCGGCTACAGTTTCGGG
GGTGCAGGTGAAGTTGGCCGAAAAGACTTTTGCCCGTACGGAGCGCCTAC
AAATGCATTTGTGCCGCATTATGTGGGAAGATTCAGCTTCGACGTGGCGA
ACAACGACCTGCTAATCATCGCGCACAATGCGACGCCAAACGCCACCGTA
ATCATCTCGGTGCGCGGGGGAACGCGGCGCGAAAGGGCGTTATACGTGGT
GCCGCCCGCGGCGTACGACCAGCATAAACTGCCATCGCGTGTGTTATCGC
TGACATTCGGCACGGAACGCAGGGAGGACTGGCAGCCAAAGTACCAGTTT
GCGGTGGGCGCCGAGGGCGAGGGCGAGTGGCGGTGGATGGTGGAAGCGCT
GGCGCGCTTGGAACGAATGCTCAAGGGGCGCTTTGTGTGTGACAACATGC
GGCGCGACGACATGGACCAGCTCAGCGGTGAGGTGCTCAACCGGCGTACG
GCTGCCACGGAGAGTGTGTTCGACGTGAAGGACGCCGTGAGTACGCGCGT
GTTCCGCGACATGGCCACGCGCTGCTACTTCTCGTACATGGCGCGCGTAA
TCGGCGCGCGCGCCGCCCCTGCCACTCAGGTAAACAGCTTGCCATGA
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protein sequence of Gchil580.t1

>Gchil580.t1 ID=Gchil580.t1|Name=Gchil580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=349bp
MQVRATNVAPSKIAASSRKAFATGAGGGAGGGAGGDDGALPETEAKLTCQ
NVRSVLKAFAQADNVAVASWLLANPAQQFHHSSELSTWAFDSSLAIHAEQ
RLTNMNGTWPTPEEGMQFVGGSAEGAEPGKDLLLVPVRLFGAKLVGYSFG
GAGEVGRKDFCPYGAPTNAFVPHYVGRFSFDVANNDLLIIAHNATPNATV
IISVRGGTRRERALYVVPPAAYDQHKLPSRVLSLTFGTERREDWQPKYQF
AVGAEGEGEWRWMVEALARLERMLKGRFVCDNMRRDDMDQLSGEVLNRRT
AATESVFDVKDAVSTRVFRDMATRCYFSYMARVIGARAAPATQVNSLP*
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mRNA from alignment at tig00004380_pilon:382462..383508+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil580.t1 ID=Gchil580.t1|Name=Gchil580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at tig00004380_pilon:382462..383508+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGTACGAGCCACCAATGTCGCGCCATCCAAGATAGCTGCTTCGTC
GAGAAAAGCGTTTgcgacgggtgctggcggcggtgctggcggcggcgctg
gcggcgacgatggcgCCTTGCCCGAGACCGAGGCCAAGCTCACCTGTCAG
AACGTGCGCAGCGTGTTGAAGGCCTTCGCCCAGGCAGACAATGTAGCCGT
GGCATCGTGGTTACTTGCCAACCCCGCGCAACAATTCCATCACAGCTCGG
AGTTGTCTACCTGGGCGTTTGACTCGTCGCTGGCCATTCATGCTGAGCAG
CGTCTCACAAACATGAACGGCACATGGCCGACACCGGAGGAGGGAATGCA
GTTTGTTGGGGGTTCGGCGGAGGGAGCGGAACCGGGCAAGGACCTGTTGC
TGGTCCCCGTGCGTCTATTTGGCGCCAAGCTGGTCGGCTACAGTTTCGGG
GGTGCAGGTGAAGTTGGCCGAAAAGACTTTTGCCCGTACGGAGCGCCTAC
AAATGCATTTGTGCCGCATTATGTGGGAAGATTCAGCTTCGACGTGGCGA
ACAACGACCTGCTAATCATCGCGCACAATGCGACGCCAAACGCCACCGTA
ATCATCTCGGTGCGCGGGGGAACGCGGCGCGAAAGGGCGTTATACGTGGT
GCCGCCCGCGGCGTACGACCAGCATAAACTGCCATCGCGTGTGTTATCGC
TGACATTCGGCACGGAACGCAGGGAGGACTGGCAGCCAAAGTACCAGTTT
GCGGTGGGCGCCGAGGGCGAGGGCGAGTGGCGGTGGATGGTGGAAGCGCT
GGCGCGCTTGGAACGAATGCTCAAGGGGCGCTTTGTGTGTGACAACATGC
GGCGCGACGACATGGACCAGCTCAGCGGTGAGGTGCTCAACCGGCGTACG
GCTGCCACGGAGAGTGTGTTCGACGTGAAGGACGCCGTGAGTACGCGCGT
GTTCCGCGACATGGCCACGCGCTGCTACTTCTCGTACATGGCGCGCGTAA
TCGGCGCGCGCGCCGCCCCTGCCACTCAGGTAAACAGCTTGCCATGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:382462..383508+

>Gchil580.t1 ID=Gchil580.t1|Name=Gchil580.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1047bp|location=Sequence derived from alignment at tig00004380_pilon:382462..383508+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGTACGAGCCACCAATGTCGCGCCATCCAAGATAGCTGCTTCGTC
GAGAAAAGCGTTTgcgacgggtgctggcggcggtgctggcggcggcgctg
gcggcgacgatggcgCCTTGCCCGAGACCGAGGCCAAGCTCACCTGTCAG
AACGTGCGCAGCGTGTTGAAGGCCTTCGCCCAGGCAGACAATGTAGCCGT
GGCATCGTGGTTACTTGCCAACCCCGCGCAACAATTCCATCACAGCTCGG
AGTTGTCTACCTGGGCGTTTGACTCGTCGCTGGCCATTCATGCTGAGCAG
CGTCTCACAAACATGAACGGCACATGGCCGACACCGGAGGAGGGAATGCA
GTTTGTTGGGGGTTCGGCGGAGGGAGCGGAACCGGGCAAGGACCTGTTGC
TGGTCCCCGTGCGTCTATTTGGCGCCAAGCTGGTCGGCTACAGTTTCGGG
GGTGCAGGTGAAGTTGGCCGAAAAGACTTTTGCCCGTACGGAGCGCCTAC
AAATGCATTTGTGCCGCATTATGTGGGAAGATTCAGCTTCGACGTGGCGA
ACAACGACCTGCTAATCATCGCGCACAATGCGACGCCAAACGCCACCGTA
ATCATCTCGGTGCGCGGGGGAACGCGGCGCGAAAGGGCGTTATACGTGGT
GCCGCCCGCGGCGTACGACCAGCATAAACTGCCATCGCGTGTGTTATCGC
TGACATTCGGCACGGAACGCAGGGAGGACTGGCAGCCAAAGTACCAGTTT
GCGGTGGGCGCCGAGGGCGAGGGCGAGTGGCGGTGGATGGTGGAAGCGCT
GGCGCGCTTGGAACGAATGCTCAAGGGGCGCTTTGTGTGTGACAACATGC
GGCGCGACGACATGGACCAGCTCAGCGGTGAGGTGCTCAACCGGCGTACG
GCTGCCACGGAGAGTGTGTTCGACGTGAAGGACGCCGTGAGTACGCGCGT
GTTCCGCGACATGGCCACGCGCTGCTACTTCTCGTACATGGCGCGCGTAA
TCGGCGCGCGCGCCGCCCCTGCCACTCAGGTAAACAGCTTGCCATGA
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