Gchil577.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil577.t1
Unique NameGchil577.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:373574..374244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil577Gchil577Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 373574..374244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1Gchil577.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 373574..374244 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1.stop1Gchil577.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 373574..373576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1.CDS1Gchil577.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 373574..374140 -
Gchil577.t1.CDS2Gchil577.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 374197..374244 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1.exon1Gchil577.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 373574..374140 -
Gchil577.t1.exon2Gchil577.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 374197..374244 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1.intron1Gchil577.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004380_pilon 374141..374196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil577.t1.start1Gchil577.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 374242..374244 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil577.t1 ID=Gchil577.t1|Name=Gchil577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=205bp
MGKTHFCFGASFFVLATCGTLLLTWTCWWLWIVGPSVPARRPFYNSLSDV
PPLVREASSYSSEPIFMYSLAGGWPTRNSIVRLLASALAVLCSFSFSFVA
TIASQAVARLTFCTVLVCTTVVSLVAAGCDLASIISTARECAASECRTEV
PKQILDTGHICQCNVDGWFYFTLLADIVLFVSAICCVVLTIVPILKRRGV
DPAY*
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spliced messenger RNA

>Gchil577.t1 ID=Gchil577.t1|Name=Gchil577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00004380_pilon:373574..374244- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAAACTCATTTTTGCTTCGGTGCGAGCTTTTTCGTTCTTGCGAC
CTGCGGAACTTTGCTTCTTACATGGACATGTTGGTGGCTCTGGATTGTCG
GGCCGTCAGTTCCAGCTCGACGCCCGTTTTACAATTCCTTGTCGGACGTG
CCGCCTTTAGTGCGTGAGGCCTCAAGCTACTCAAGCGAACCAATCTTCAT
GTACAGTCTTGCAGGCGGATGGCCCACTCGAAATTCCATCGTTCGACTTT
TAGCATCGGCATTGGCAGTTTTGTGCTCTTTCTCGTTTTCTTTCGTCGCA
ACAATAGCGTCACAAGCGGTTGCGCGTCTAACGTTTTGTACCGTTTTGGT
TTGTACAACGGTAGTATCATTAGTAGCTGCTGGATGCGATTTGGCTTCCA
TCATATCTACTGCACGGGAATGTGCTGCTTCTGAATGTCGAACCGAAGTG
CCAAAACAAATATTGGATACTGGACATATTTGTCAGTGTAACGTGGATGG
ATGGTTTTACTTTACACTGCTCGCCGATATCGTACTGTTCGTGAGTGCCA
TATGTTGCGTGGTACTCACCATAGTACCTATTCTAAAGCGAAGAGGAGTG
GATCCCGCGTACTAG
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protein sequence of Gchil577.t1

>Gchil577.t1 ID=Gchil577.t1|Name=Gchil577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MGKTHFCFGASFFVLATCGTLLLTWTCWWLWIVGPSVPARRPFYNSLSDV
PPLVREASSYSSEPIFMYSLAGGWPTRNSIVRLLASALAVLCSFSFSFVA
TIASQAVARLTFCTVLVCTTVVSLVAAGCDLASIISTARECAASECRTEV
PKQILDTGHICQCNVDGWFYFTLLADIVLFVSAICCVVLTIVPILKRRGV
DPAY*
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mRNA from alignment at tig00004380_pilon:373574..374244-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil577.t1 ID=Gchil577.t1|Name=Gchil577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=671bp|location=Sequence derived from alignment at tig00004380_pilon:373574..374244- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAAACTCATTTTTGCTTCGGTGCGAGCTTTTTCGTTCTTGCGGT
AAGTGTATAGCGACCCCGTTTCAACTTCAAAAACCCCTCTAACACGACTA
GCAGACCTGCGGAACTTTGCTTCTTACATGGACATGTTGGTGGCTCTGGA
TTGTCGGGCCGTCAGTTCCAGCTCGACGCCCGTTTTACAATTCCTTGTCG
GACGTGCCGCCTTTAGTGCGTGAGGCCTCAAGCTACTCAAGCGAACCAAT
CTTCATGTACAGTCTTGCAGGCGGATGGCCCACTCGAAATTCCATCGTTC
GACTTTTAGCATCGGCATTGGCAGTTTTGTGCTCTTTCTCGTTTTCTTTC
GTCGCAACAATAGCGTCACAAGCGGTTGCGCGTCTAACGTTTTGTACCGT
TTTGGTTTGTACAACGGTAGTATCATTAGTAGCTGCTGGATGCGATTTGG
CTTCCATCATATCTACTGCACGGGAATGTGCTGCTTCTGAATGTCGAACC
GAAGTGCCAAAACAAATATTGGATACTGGACATATTTGTCAGTGTAACGT
GGATGGATGGTTTTACTTTACACTGCTCGCCGATATCGTACTGTTCGTGA
GTGCCATATGTTGCGTGGTACTCACCATAGTACCTATTCTAAAGCGAAGA
GGAGTGGATCCCGCGTACTAG
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Coding sequence (CDS) from alignment at tig00004380_pilon:373574..374244-

>Gchil577.t1 ID=Gchil577.t1|Name=Gchil577.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00004380_pilon:373574..374244- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAAACTCATTTTTGCTTCGGTGCGAGCTTTTTCGTTCTTGCGAC
CTGCGGAACTTTGCTTCTTACATGGACATGTTGGTGGCTCTGGATTGTCG
GGCCGTCAGTTCCAGCTCGACGCCCGTTTTACAATTCCTTGTCGGACGTG
CCGCCTTTAGTGCGTGAGGCCTCAAGCTACTCAAGCGAACCAATCTTCAT
GTACAGTCTTGCAGGCGGATGGCCCACTCGAAATTCCATCGTTCGACTTT
TAGCATCGGCATTGGCAGTTTTGTGCTCTTTCTCGTTTTCTTTCGTCGCA
ACAATAGCGTCACAAGCGGTTGCGCGTCTAACGTTTTGTACCGTTTTGGT
TTGTACAACGGTAGTATCATTAGTAGCTGCTGGATGCGATTTGGCTTCCA
TCATATCTACTGCACGGGAATGTGCTGCTTCTGAATGTCGAACCGAAGTG
CCAAAACAAATATTGGATACTGGACATATTTGTCAGTGTAACGTGGATGG
ATGGTTTTACTTTACACTGCTCGCCGATATCGTACTGTTCGTGAGTGCCA
TATGTTGCGTGGTACTCACCATAGTACCTATTCTAAAGCGAAGAGGAGTG
GATCCCGCGTACTAG
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