Gchil5760.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5760.t1
Unique Name	Gchil5760.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	472

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000015_pilon	contig	tig00000015_pilon:1467652..1469067 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	140110.NechaP73041
PFAMs	C2,SMP_LBD
Max annot lvl	4751\|Fungi
Evalue	1.29e-144
EggNOG OGs	COG5038@1\|root,KOG1012@2759\|Eukaryota,38DXC@33154\|Opisthokonta,3NYHP@4751\|Fungi,3QNWE@4890\|Ascomycota,216GX@147550\|Sordariomycetes,3TVJ1@5125\|Hypocreales,1FNNP@110618\|Nectriaceae
Description	Synaptotagmin-like mitochondrial-lipid-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5760	Gchil5760	Gracilaria chilensis NLEC103_M9 male	gene	tig00000015_pilon 1467652..1469067 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5760.t1.start1	Gchil5760.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000015_pilon 1467652..1467654 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5760.t1.CDS1	Gchil5760.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000015_pilon 1467652..1469067 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5760.t1.exon1	Gchil5760.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000015_pilon 1467652..1469067 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5760.t1.stop1	Gchil5760.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000015_pilon 1469065..1469067 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5760.t1	Gchil5760.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000015_pilon 1467652..1469067 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000015_pilon:1467652..1469067+
coding sequence from alignment at tig00000015_pilon:1467652..1469067+

mRNA sequence

>Gchil5760.t1 ID=Gchil5760.t1|Name=Gchil5760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=472bp
MEGSVSAAIAASVASGGVESVGFLNDLVARLWDYINVAGARLTKEIVEPM
FAEMLPGPLKSLHFVKIDLGKKPIKFDNVDVLSRERGVVKLNIDVHWDGN
CDIELASSMLKFGVESVKIKGRLSVLLCPLIERMPIVSAMQVAFINPPEL
ELDFTGLAQVADFSLIDDTIRSIIQNVLASILVLPSRLLVKLDPANDFFL
TYKPPLGMIRFTIEKGEGFKVPKQFIKDIPDVYCKVKFGVDPLWKTSTKN
NDTTPEWNESRDFLLSDHDQILKIQAYDDDLAGDDDLGSGSIAVGNLLLE
GKQSDISLKYKGEDVGATITVKATIYEFSKDLLSFELPDHTGKGLLCGLA
TVMVPGAFNIPGPREEAASKVKLSFGPLDLYSPVIFNNPGIDALNPCYDW
AVRIPLTHAIVAKSPDFELTLMNGKKVLGSTTVPFAEVLEAEQKTVTDKR
EMGESASVSFRVCVRGVHVVN*

spliced messenger RNA

>Gchil5760.t1 ID=Gchil5760.t1|Name=Gchil5760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000015_pilon:1467652..1469067+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGCAGCGTTTCTGCAGCTATTGCTGCTTCTGTCGCATCTGGAGG
CGTTGAATCCGTCGGCTTTCTTAACGATCTAGTTGCGCGACTATGGGACT
ATATCAATGTCGCTGGAGCCAGGCTCACAAAAGAGATTGTCGAACCCATG
TTCGCAGAGATGCTCCCGGGCCCGCTCAAGTCGTTGCATTTCGTCAAGAT
TGATCTTGGAAAAAAGCCCATCAAGTTCGATAATGTTGATGTTCTAAGTC
GCGAAAGGGGTGTTGTCAAGTTAAATATTGATGTTCATTGGGATGGTAAC
TGTGATATTGAGCTTGCAAGTAGCATGTTAAAGTTCGGTGTTGAATCTGT
CAAGATTAAGGGACGTTTGTCGGTGCTTTTGTGCCCTTTGATTGAACGTA
TGCCCATAGTTTCTGCTATGCAAGTTGCTTTCATCAATCCGCCGGAGCTT
GAACTAGACTTTACTGGTTTGGCCCAGGTTGCTGACTTTTCACTTATTGA
TGATACCATCCGTTCCATTATCCAAAACGTTCTCGCCTCTATTCTTGTGT
TACCAAGCCGGCTACTAGTCAAGCTTGACCCAGCAAATGATTTCTTTTTG
ACATACAAACCCCCACTGGGTATGATTCGTTTCACGATTGAGAAGGGAGA
AGGTTTCAAGGTTCCAAAACAATTCATCAAAGATATTCCCGATGTGTACT
GCAAGGTCAAGTTCGGCGTAGATCCGCTTTGGAAAACTTCTACCAAGAAC
AACGACACCACTCCGGAATGGAATGAAAGCAGAGACTTCCTTCTCTCGGA
TCACGATCAGATCTTGAAAATCCAAGCGTATGATGACGACCTTGCCGGAG
ACGATGATTTAGGATCAGGTAGCATTGCGGTTGGAAATCTGCTGCTAGAA
GGTAAACAGTCGGACATATCGCTCAAGTACAAGGGAGAAGATGTAGGTGC
CACAATCACCGTCAAGGCCACCATCTATGAATTTAGCAAAGACCTCCTCA
GTTTTGAATTGCCTGACCATACAGGAAAGGGGCTTCTATGCGGCCTGGCT
ACTGTCATGGTTCCTGGGGCTTTCAATATTCCCGGTCCTCGTGAAGAAGC
TGCATCGAAAGTGAAATTGAGTTTTGGCCCCCTGGATCTCTACTCGCCGG
TTATCTTCAACAATCCTGGCATTGATGCCCTCAACCCATGCTATGATTGG
GCTGTGCGTATTCCTCTCACGCATGCTATTGTAGCGAAAAGCCCTGATTT
CGAGTTAACTCTCATGAACGGCAAGAAGGTTCTCGGCTCGACCACGGTTC
CATTCGCGGAGGTTTTGGAGGCTGAACAGAAAACAGTTACCGACAAACGA
GAAATGGGTGAAAGCGCTTCTGTTTCCTTCCGTGTGTGCGTCCGCGGTGT
ACATGTGGTGAACTAA

protein sequence of Gchil5760.t1

>Gchil5760.t1 ID=Gchil5760.t1|Name=Gchil5760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=472bp
MEGSVSAAIAASVASGGVESVGFLNDLVARLWDYINVAGARLTKEIVEPM
FAEMLPGPLKSLHFVKIDLGKKPIKFDNVDVLSRERGVVKLNIDVHWDGN
CDIELASSMLKFGVESVKIKGRLSVLLCPLIERMPIVSAMQVAFINPPEL
ELDFTGLAQVADFSLIDDTIRSIIQNVLASILVLPSRLLVKLDPANDFFL
TYKPPLGMIRFTIEKGEGFKVPKQFIKDIPDVYCKVKFGVDPLWKTSTKN
NDTTPEWNESRDFLLSDHDQILKIQAYDDDLAGDDDLGSGSIAVGNLLLE
GKQSDISLKYKGEDVGATITVKATIYEFSKDLLSFELPDHTGKGLLCGLA
TVMVPGAFNIPGPREEAASKVKLSFGPLDLYSPVIFNNPGIDALNPCYDW
AVRIPLTHAIVAKSPDFELTLMNGKKVLGSTTVPFAEVLEAEQKTVTDKR
EMGESASVSFRVCVRGVHVVN*

mRNA from alignment at tig00000015_pilon:1467652..1469067+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5760.t1 ID=Gchil5760.t1|Name=Gchil5760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000015_pilon:1467652..1469067+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGGCAGCGTTTCTGCAGCTATTGCTGCTTCTGTCGCATCTGGAGG
CGTTGAATCCGTCGGCTTTCTTAACGATCTAGTTGCGCGACTATGGGACT
ATATCAATGTCGCTGGAGCCAGGCTCACAAAAGAGATTGTCGAACCCATG
TTCGCAGAGATGCTCCCGGGCCCGCTCAAGTCGTTGCATTTCGTCAAGAT
TGATCTTGGAAAAAAGCCCATCAAGTTCGATAATGTTGATGTTCTAAGTC
GCGAAAGGGGTGTTGTCAAGTTAAATATTGATGTTCATTGGGATGGTAAC
TGTGATATTGAGCTTGCAAGTAGCATGTTAAAGTTCGGTGTTGAATCTGT
CAAGATTAAGGGACGTTTGTCGGTGCTTTTGTGCCCTTTGATTGAACGTA
TGCCCATAGTTTCTGCTATGCAAGTTGCTTTCATCAATCCGCCGGAGCTT
GAACTAGACTTTACTGGTTTGGCCCAGGTTGCTGACTTTTCACTTATTGA
TGATACCATCCGTTCCATTATCCAAAACGTTCTCGCCTCTATTCTTGTGT
TACCAAGCCGGCTACTAGTCAAGCTTGACCCAGCAAATGATTTCTTTTTG
ACATACAAACCCCCACTGGGTATGATTCGTTTCACGATTGAGAAGGGAGA
AGGTTTCAAGGTTCCAAAACAATTCATCAAAGATATTCCCGATGTGTACT
GCAAGGTCAAGTTCGGCGTAGATCCGCTTTGGAAAACTTCTACCAAGAAC
AACGACACCACTCCGGAATGGAATGAAAGCAGAGACTTCCTTCTCTCGGA
TCACGATCAGATCTTGAAAATCCAAGCGTATGATGACGACCTTGCCGGAG
ACGATGATTTAGGATCAGGTAGCATTGCGGTTGGAAATCTGCTGCTAGAA
GGTAAACAGTCGGACATATCGCTCAAGTACAAGGGAGAAGATGTAGGTGC
CACAATCACCGTCAAGGCCACCATCTATGAATTTAGCAAAGACCTCCTCA
GTTTTGAATTGCCTGACCATACAGGAAAGGGGCTTCTATGCGGCCTGGCT
ACTGTCATGGTTCCTGGGGCTTTCAATATTCCCGGTCCTCGTGAAGAAGC
TGCATCGAAAGTGAAATTGAGTTTTGGCCCCCTGGATCTCTACTCGCCGG
TTATCTTCAACAATCCTGGCATTGATGCCCTCAACCCATGCTATGATTGG
GCTGTGCGTATTCCTCTCACGCATGCTATTGTAGCGAAAAGCCCTGATTT
CGAGTTAACTCTCATGAACGGCAAGAAGGTTCTCGGCTCGACCACGGTTC
CATTCGCGGAGGTTTTGGAGGCTGAACAGAAAACAGTTACCGACAAACGA
GAAATGGGTGAAAGCGCTTCTGTTTCCTTCCGTGTGTGCGTCCGCGGTGT
ACATGTGGTGAACTAA

Coding sequence (CDS) from alignment at tig00000015_pilon:1467652..1469067+

>Gchil5760.t1 ID=Gchil5760.t1|Name=Gchil5760.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000015_pilon:1467652..1469067+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGGCAGCGTTTCTGCAGCTATTGCTGCTTCTGTCGCATCTGGAGG
CGTTGAATCCGTCGGCTTTCTTAACGATCTAGTTGCGCGACTATGGGACT
ATATCAATGTCGCTGGAGCCAGGCTCACAAAAGAGATTGTCGAACCCATG
TTCGCAGAGATGCTCCCGGGCCCGCTCAAGTCGTTGCATTTCGTCAAGAT
TGATCTTGGAAAAAAGCCCATCAAGTTCGATAATGTTGATGTTCTAAGTC
GCGAAAGGGGTGTTGTCAAGTTAAATATTGATGTTCATTGGGATGGTAAC
TGTGATATTGAGCTTGCAAGTAGCATGTTAAAGTTCGGTGTTGAATCTGT
CAAGATTAAGGGACGTTTGTCGGTGCTTTTGTGCCCTTTGATTGAACGTA
TGCCCATAGTTTCTGCTATGCAAGTTGCTTTCATCAATCCGCCGGAGCTT
GAACTAGACTTTACTGGTTTGGCCCAGGTTGCTGACTTTTCACTTATTGA
TGATACCATCCGTTCCATTATCCAAAACGTTCTCGCCTCTATTCTTGTGT
TACCAAGCCGGCTACTAGTCAAGCTTGACCCAGCAAATGATTTCTTTTTG
ACATACAAACCCCCACTGGGTATGATTCGTTTCACGATTGAGAAGGGAGA
AGGTTTCAAGGTTCCAAAACAATTCATCAAAGATATTCCCGATGTGTACT
GCAAGGTCAAGTTCGGCGTAGATCCGCTTTGGAAAACTTCTACCAAGAAC
AACGACACCACTCCGGAATGGAATGAAAGCAGAGACTTCCTTCTCTCGGA
TCACGATCAGATCTTGAAAATCCAAGCGTATGATGACGACCTTGCCGGAG
ACGATGATTTAGGATCAGGTAGCATTGCGGTTGGAAATCTGCTGCTAGAA
GGTAAACAGTCGGACATATCGCTCAAGTACAAGGGAGAAGATGTAGGTGC
CACAATCACCGTCAAGGCCACCATCTATGAATTTAGCAAAGACCTCCTCA
GTTTTGAATTGCCTGACCATACAGGAAAGGGGCTTCTATGCGGCCTGGCT
ACTGTCATGGTTCCTGGGGCTTTCAATATTCCCGGTCCTCGTGAAGAAGC
TGCATCGAAAGTGAAATTGAGTTTTGGCCCCCTGGATCTCTACTCGCCGG
TTATCTTCAACAATCCTGGCATTGATGCCCTCAACCCATGCTATGATTGG
GCTGTGCGTATTCCTCTCACGCATGCTATTGTAGCGAAAAGCCCTGATTT
CGAGTTAACTCTCATGAACGGCAAGAAGGTTCTCGGCTCGACCACGGTTC
CATTCGCGGAGGTTTTGGAGGCTGAACAGAAAACAGTTACCGACAAACGA
GAAATGGGTGAAAGCGCTTCTGTTTCCTTCCGTGTGTGCGTCCGCGGTGT
ACATGTGGTGAACTAA