Gchil5753.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5753.t1
Unique NameGchil5753.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1379143..1379913 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002611467.1
Max annot lvl33208|Metazoa
Evalue3.82e-86
EggNOG OGs28MRV@1|root,2QUA2@2759|Eukaryota,39UWM@33154|Opisthokonta,3BQV0@33208|Metazoa,3DCWW@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5753Gchil5753Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1379143..1379913 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5753.t1.stop1Gchil5753.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1379143..1379145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5753.t1.CDS1Gchil5753.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1379143..1379913 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5753.t1.exon1Gchil5753.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1379143..1379913 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5753.t1.start1Gchil5753.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1379911..1379913 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5753.t1Gchil5753.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1379143..1379913 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5753.t1 ID=Gchil5753.t1|Name=Gchil5753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=257bp
MMKPVHHMIPEEVRQELQVFKEKHAFVRPTRSNIDPSRPWKGPPPNYDVA
DLLYFRGKTMNHDPSSLEGIVENAVKNWEMEATHLDFQHWNSVHHASYRV
CSNGAKTFVGEEGAQAGNYNWLLAGVDRRLYDNERETFESSHELFRGAFL
GGFPWEILKVFSAPPRVSFSWRHWATFHEDGKFKGRKGDGKEYELFGFGV
VDLNENLKIKSIEIYYKPEEFMKAMHGEIVPSCLDKGQSLLGSGCPFLES
QSTTGQ*
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spliced messenger RNA

>Gchil5753.t1 ID=Gchil5753.t1|Name=Gchil5753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000015_pilon:1379143..1379913- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAACCCGTGCACCACATGATCCCCGAGGAGGTGCGTCAAGAGTT
ACAAGTCTTCAAAGAGAAACATGCCTTCGTGAGACCAACACGCTCCAATA
TCGATCCCAGTCGTCCCTGGAAAGGTCCTCCGCCGAATTATGATGTTGCT
GATCTGTTATACTTTCGTGGCAAGACCATGAATCACGACCCTTCTTCTCT
TGAAGGTATTGTCGAAAATGCAGTAAAGAATTGGGAGATGGAAGCCACCC
ACTTAGACTTTCAGCACTGGAATTCCGTGCATCACGCTTCGTATCGTGTG
TGTTCAAACGGCGCAAAGACGTTTGTAGGCGAAGAAGGAGCTCAAGCTGG
AAATTACAATTGGCTACTCGCTGGCGTTGACAGAAGGCTTTATGACAACG
AACGTGAAACGTTTGAGAGTTCTCACGAGTTATTCCGCGGTGCGTTTCTT
GGGGGGTTTCCGTGGGAGATACTGAAGGTATTCTCCGCTCCGCCACGAGT
GTCATTTTCCTGGCGCCATTGGGCTACCTTTCACGAAGACGGAAAGTTTA
AAGGGCGGAAAGGTGACGGAAAGGAGTATGAGTTATTTGGATTTGGTGTG
GTAGATCTCAATGAAAACTTGAAAATAAAAAGCATTGAGATATACTACAA
GCCGGAAGAATTCATGAAGGCTATGCACGGTGAGATTGTCCCGTCTTGTC
TTGACAAGGGACAGAGTTTGCTGGGCAGTGGATGTCCCTTTTTAGAGAGT
CAAAGCACCACGGGCCAATAA
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protein sequence of Gchil5753.t1

>Gchil5753.t1 ID=Gchil5753.t1|Name=Gchil5753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=257bp
MMKPVHHMIPEEVRQELQVFKEKHAFVRPTRSNIDPSRPWKGPPPNYDVA
DLLYFRGKTMNHDPSSLEGIVENAVKNWEMEATHLDFQHWNSVHHASYRV
CSNGAKTFVGEEGAQAGNYNWLLAGVDRRLYDNERETFESSHELFRGAFL
GGFPWEILKVFSAPPRVSFSWRHWATFHEDGKFKGRKGDGKEYELFGFGV
VDLNENLKIKSIEIYYKPEEFMKAMHGEIVPSCLDKGQSLLGSGCPFLES
QSTTGQ*
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mRNA from alignment at tig00000015_pilon:1379143..1379913-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5753.t1 ID=Gchil5753.t1|Name=Gchil5753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000015_pilon:1379143..1379913- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAAACCCGTGCACCACATGATCCCCGAGGAGGTGCGTCAAGAGTT
ACAAGTCTTCAAAGAGAAACATGCCTTCGTGAGACCAACACGCTCCAATA
TCGATCCCAGTCGTCCCTGGAAAGGTCCTCCGCCGAATTATGATGTTGCT
GATCTGTTATACTTTCGTGGCAAGACCATGAATCACGACCCTTCTTCTCT
TGAAGGTATTGTCGAAAATGCAGTAAAGAATTGGGAGATGGAAGCCACCC
ACTTAGACTTTCAGCACTGGAATTCCGTGCATCACGCTTCGTATCGTGTG
TGTTCAAACGGCGCAAAGACGTTTGTAGGCGAAGAAGGAGCTCAAGCTGG
AAATTACAATTGGCTACTCGCTGGCGTTGACAGAAGGCTTTATGACAACG
AACGTGAAACGTTTGAGAGTTCTCACGAGTTATTCCGCGGTGCGTTTCTT
GGGGGGTTTCCGTGGGAGATACTGAAGGTATTCTCCGCTCCGCCACGAGT
GTCATTTTCCTGGCGCCATTGGGCTACCTTTCACGAAGACGGAAAGTTTA
AAGGGCGGAAAGGTGACGGAAAGGAGTATGAGTTATTTGGATTTGGTGTG
GTAGATCTCAATGAAAACTTGAAAATAAAAAGCATTGAGATATACTACAA
GCCGGAAGAATTCATGAAGGCTATGCACGGTGAGATTGTCCCGTCTTGTC
TTGACAAGGGACAGAGTTTGCTGGGCAGTGGATGTCCCTTTTTAGAGAGT
CAAAGCACCACGGGCCAATAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1379143..1379913-

>Gchil5753.t1 ID=Gchil5753.t1|Name=Gchil5753.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000015_pilon:1379143..1379913- (Gracilaria chilensis NLEC103_M9 male)
ATGATGAAACCCGTGCACCACATGATCCCCGAGGAGGTGCGTCAAGAGTT
ACAAGTCTTCAAAGAGAAACATGCCTTCGTGAGACCAACACGCTCCAATA
TCGATCCCAGTCGTCCCTGGAAAGGTCCTCCGCCGAATTATGATGTTGCT
GATCTGTTATACTTTCGTGGCAAGACCATGAATCACGACCCTTCTTCTCT
TGAAGGTATTGTCGAAAATGCAGTAAAGAATTGGGAGATGGAAGCCACCC
ACTTAGACTTTCAGCACTGGAATTCCGTGCATCACGCTTCGTATCGTGTG
TGTTCAAACGGCGCAAAGACGTTTGTAGGCGAAGAAGGAGCTCAAGCTGG
AAATTACAATTGGCTACTCGCTGGCGTTGACAGAAGGCTTTATGACAACG
AACGTGAAACGTTTGAGAGTTCTCACGAGTTATTCCGCGGTGCGTTTCTT
GGGGGGTTTCCGTGGGAGATACTGAAGGTATTCTCCGCTCCGCCACGAGT
GTCATTTTCCTGGCGCCATTGGGCTACCTTTCACGAAGACGGAAAGTTTA
AAGGGCGGAAAGGTGACGGAAAGGAGTATGAGTTATTTGGATTTGGTGTG
GTAGATCTCAATGAAAACTTGAAAATAAAAAGCATTGAGATATACTACAA
GCCGGAAGAATTCATGAAGGCTATGCACGGTGAGATTGTCCCGTCTTGTC
TTGACAAGGGACAGAGTTTGCTGGGCAGTGGATGTCCCTTTTTAGAGAGT
CAAAGCACCACGGGCCAATAA
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