Gchil5740.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5740.t1
Unique NameGchil5740.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1275952..1277335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096PA36
PFAMsTHUMP
Max annot lvl3041|Chlorophyta
KEGG koko:K06963
Evalue9.33e-24
EggNOG OGsCOG1818@1|root,KOG3943@2759|Eukaryota,37PFC@33090|Viridiplantae,34N5G@3041|Chlorophyta
DescriptionTHUMP
COG categoryS
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5740Gchil5740Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1275952..1277335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1Gchil5740.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1275952..1277335 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1.start1Gchil5740.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1275952..1275954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1.CDS1Gchil5740.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1275952..1276020 +
Gchil5740.t1.CDS2Gchil5740.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1276094..1277335 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1.exon1Gchil5740.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1275952..1276020 +
Gchil5740.t1.exon2Gchil5740.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1276094..1277335 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1.intron1Gchil5740.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000015_pilon 1276021..1276093 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5740.t1.stop1Gchil5740.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1277333..1277335 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5740.t1 ID=Gchil5740.t1|Name=Gchil5740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MDATLPQKRNTAAEAGGPQECRTAQCGVLVGCTPGHEHHAFRDAVVLLSR
FVKEACAGGGEAPRHAGRDGDEGEHKGDGDSKASTGGDPLEKELDDLRRG
GSDKVFTRVVADVKGAVFLRVNDQKADLEQVVERALLEARQTGNAGSRHC
IRVLPIYGTCYAKVDTAITVALTVVKEHFPVVERQGGVSYAIVFRARLNN
SAKRDAYIDAIAAAIHAYEPRYKVDLTKPDVVLIVEVMKTSCCIGTFRKY
YQLAKLNLREAACPSNPKQTKKERATKEKDENVGKVANRATDQVAGQTES
KVTATDSTEIADGAPTESINEAANVSSEDVANNATNKLAPEISNEADNKA
ANEDEPKAVNDSAPKACDRVGSKVANQVAPQIGDEVANKVPEECVYASKK
TKESEQKSESADEGEASKAISMEGTVEEDDEEAAAK*
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spliced messenger RNA

>Gchil5740.t1 ID=Gchil5740.t1|Name=Gchil5740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000015_pilon:1275952..1277335+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCAACGCTGCCGCAGAAGCGCAACACTGCCGCAGAAGCAGGAGG
CCCCCAAGAATGCCGCACTGCGCAATGTGGCGTGCTTGTGGGCTGCACCC
CGGGCCACGAGCATCATGCTTTCCGTGACGCCGTCGTACTTCTGTCCCGT
TTCGTCAAGGAGGCGTGCGCGGGTGGCGGTGAGGCCCCGAGGCATGCAGG
CCGCGACGGCGATGAGGGTGAGCACAAGGGCGACGGCGACAGCAAGGCGA
GTACCGGTGGTGATCCACTAGAAAAAGAGTTGGACGACTTGCGAAGAGGG
GGTAGTGACAAAGTGTTCACCCGTGTCGTGGCCGACGTGAAAGGCGCCGT
ATTCCTTCGCGTCAATGATCAGAAAGCCGATCTGGAGCAAGTAGTGGAAC
GCGCGTTGCTCGAAGCACGACAGACTGGCAATGCTGGTTCTCGCCATTGT
ATCCGAGTGCTCCCTATATATGGCACGTGCTACGCGAAGGTCGACACGGC
CATTACCGTGGCTTTGACCGTCGTCAAAGAGCACTTTCCCGTCGTGGAGC
GGCAGGGAGGTGTGTCATATGCTATTGTGTTCCGCGCAAGACTCAACAAT
TCTGCGAAAAGGGATGCATATATCGATGCCATTGCGGCCGCTATTCATGC
GTATGAACCGCGCTATAAAGTAGATTTGACAAAGCCGGATGTGGTGCTGA
TTGTAGAAGTTATGAAGACCAGTTGTTGTATCGGAACGTTTCGAAAGTAC
TACCAGCTGGCAAAACTGAATCTCAGGGAGGCTGCTTGTCCTTCCAATCC
AAAACAAACGAAAAAAGAGAGGGCCACAAAAGAGAAAGACGAAAATGTTG
GCAAAGTTGCAAACCGAGCTACGGATCAAGTTGCTGGCCAAACTGAGAGC
AAAGTGACGGCTACGGACTCCACTGAAATTGCTGATGGAGCCCCAACTGA
AAGTATAAATGAAGCTGCAAACGTTTCCAGTGAGGACGTAGCTAACAACG
CTACCAATAAACTTGCTCCCGAAATTTCCAATGAAGCGGACAACAAGGCT
GCCAATGAGGATGAACCGAAAGCTGTAAATGACTCTGCACCTAAAGCTTG
CGACCGAGTCGGGAGCAAAGTCGCCAATCAAGTTGCCCCTCAAATTGGAG
ATGAAGTCGCAAACAAAGTCCCGGAAGAATGTGTCTACGCGAGTAAGAAA
ACGAAAGAATCGGAACAGAAATCAGAGTCTGCTGACGAAGGGGAAGCCTC
GAAGGCAATCTCGATGGAAGGAACAGTAGAAGAAGATGACGAGGAAGCTG
CAGCCAAGTAG
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protein sequence of Gchil5740.t1

>Gchil5740.t1 ID=Gchil5740.t1|Name=Gchil5740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MDATLPQKRNTAAEAGGPQECRTAQCGVLVGCTPGHEHHAFRDAVVLLSR
FVKEACAGGGEAPRHAGRDGDEGEHKGDGDSKASTGGDPLEKELDDLRRG
GSDKVFTRVVADVKGAVFLRVNDQKADLEQVVERALLEARQTGNAGSRHC
IRVLPIYGTCYAKVDTAITVALTVVKEHFPVVERQGGVSYAIVFRARLNN
SAKRDAYIDAIAAAIHAYEPRYKVDLTKPDVVLIVEVMKTSCCIGTFRKY
YQLAKLNLREAACPSNPKQTKKERATKEKDENVGKVANRATDQVAGQTES
KVTATDSTEIADGAPTESINEAANVSSEDVANNATNKLAPEISNEADNKA
ANEDEPKAVNDSAPKACDRVGSKVANQVAPQIGDEVANKVPEECVYASKK
TKESEQKSESADEGEASKAISMEGTVEEDDEEAAAK*
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mRNA from alignment at tig00000015_pilon:1275952..1277335+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5740.t1 ID=Gchil5740.t1|Name=Gchil5740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1384bp|location=Sequence derived from alignment at tig00000015_pilon:1275952..1277335+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAACGCTGCCGCAGAAGCGCAACACTGCCGCAGAAGCAGGAGG
CCCCCAAGAATGCCGCACTGTCCTCTCGAGCGCGACGGAAAAAATTTCGC
ACGGTGGGCGTCCATACTGTTCGACGCGCCGATCTCAGTCAGGCGCAATG
TGGCGTGCTTGTGGGCTGCACCCCGGGCCACGAGCATCATGCTTTCCGTG
ACGCCGTCGTACTTCTGTCCCGTTTCGTCAAGGAGGCGTGCGCGGGTGGC
GGTGAGGCCCCGAGGCATGCAGGCCGCGACGGCGATGAGGGTGAGCACAA
GGGCGACGGCGACAGCAAGGCGAGTACCGGTGGTGATCCACTAGAAAAAG
AGTTGGACGACTTGCGAAGAGGGGGTAGTGACAAAGTGTTCACCCGTGTC
GTGGCCGACGTGAAAGGCGCCGTATTCCTTCGCGTCAATGATCAGAAAGC
CGATCTGGAGCAAGTAGTGGAACGCGCGTTGCTCGAAGCACGACAGACTG
GCAATGCTGGTTCTCGCCATTGTATCCGAGTGCTCCCTATATATGGCACG
TGCTACGCGAAGGTCGACACGGCCATTACCGTGGCTTTGACCGTCGTCAA
AGAGCACTTTCCCGTCGTGGAGCGGCAGGGAGGTGTGTCATATGCTATTG
TGTTCCGCGCAAGACTCAACAATTCTGCGAAAAGGGATGCATATATCGAT
GCCATTGCGGCCGCTATTCATGCGTATGAACCGCGCTATAAAGTAGATTT
GACAAAGCCGGATGTGGTGCTGATTGTAGAAGTTATGAAGACCAGTTGTT
GTATCGGAACGTTTCGAAAGTACTACCAGCTGGCAAAACTGAATCTCAGG
GAGGCTGCTTGTCCTTCCAATCCAAAACAAACGAAAAAAGAGAGGGCCAC
AAAAGAGAAAGACGAAAATGTTGGCAAAGTTGCAAACCGAGCTACGGATC
AAGTTGCTGGCCAAACTGAGAGCAAAGTGACGGCTACGGACTCCACTGAA
ATTGCTGATGGAGCCCCAACTGAAAGTATAAATGAAGCTGCAAACGTTTC
CAGTGAGGACGTAGCTAACAACGCTACCAATAAACTTGCTCCCGAAATTT
CCAATGAAGCGGACAACAAGGCTGCCAATGAGGATGAACCGAAAGCTGTA
AATGACTCTGCACCTAAAGCTTGCGACCGAGTCGGGAGCAAAGTCGCCAA
TCAAGTTGCCCCTCAAATTGGAGATGAAGTCGCAAACAAAGTCCCGGAAG
AATGTGTCTACGCGAGTAAGAAAACGAAAGAATCGGAACAGAAATCAGAG
TCTGCTGACGAAGGGGAAGCCTCGAAGGCAATCTCGATGGAAGGAACAGT
AGAAGAAGATGACGAGGAAGCTGCAGCCAAGTAG
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Coding sequence (CDS) from alignment at tig00000015_pilon:1275952..1277335+

>Gchil5740.t1 ID=Gchil5740.t1|Name=Gchil5740.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000015_pilon:1275952..1277335+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCAACGCTGCCGCAGAAGCGCAACACTGCCGCAGAAGCAGGAGG
CCCCCAAGAATGCCGCACTGCGCAATGTGGCGTGCTTGTGGGCTGCACCC
CGGGCCACGAGCATCATGCTTTCCGTGACGCCGTCGTACTTCTGTCCCGT
TTCGTCAAGGAGGCGTGCGCGGGTGGCGGTGAGGCCCCGAGGCATGCAGG
CCGCGACGGCGATGAGGGTGAGCACAAGGGCGACGGCGACAGCAAGGCGA
GTACCGGTGGTGATCCACTAGAAAAAGAGTTGGACGACTTGCGAAGAGGG
GGTAGTGACAAAGTGTTCACCCGTGTCGTGGCCGACGTGAAAGGCGCCGT
ATTCCTTCGCGTCAATGATCAGAAAGCCGATCTGGAGCAAGTAGTGGAAC
GCGCGTTGCTCGAAGCACGACAGACTGGCAATGCTGGTTCTCGCCATTGT
ATCCGAGTGCTCCCTATATATGGCACGTGCTACGCGAAGGTCGACACGGC
CATTACCGTGGCTTTGACCGTCGTCAAAGAGCACTTTCCCGTCGTGGAGC
GGCAGGGAGGTGTGTCATATGCTATTGTGTTCCGCGCAAGACTCAACAAT
TCTGCGAAAAGGGATGCATATATCGATGCCATTGCGGCCGCTATTCATGC
GTATGAACCGCGCTATAAAGTAGATTTGACAAAGCCGGATGTGGTGCTGA
TTGTAGAAGTTATGAAGACCAGTTGTTGTATCGGAACGTTTCGAAAGTAC
TACCAGCTGGCAAAACTGAATCTCAGGGAGGCTGCTTGTCCTTCCAATCC
AAAACAAACGAAAAAAGAGAGGGCCACAAAAGAGAAAGACGAAAATGTTG
GCAAAGTTGCAAACCGAGCTACGGATCAAGTTGCTGGCCAAACTGAGAGC
AAAGTGACGGCTACGGACTCCACTGAAATTGCTGATGGAGCCCCAACTGA
AAGTATAAATGAAGCTGCAAACGTTTCCAGTGAGGACGTAGCTAACAACG
CTACCAATAAACTTGCTCCCGAAATTTCCAATGAAGCGGACAACAAGGCT
GCCAATGAGGATGAACCGAAAGCTGTAAATGACTCTGCACCTAAAGCTTG
CGACCGAGTCGGGAGCAAAGTCGCCAATCAAGTTGCCCCTCAAATTGGAG
ATGAAGTCGCAAACAAAGTCCCGGAAGAATGTGTCTACGCGAGTAAGAAA
ACGAAAGAATCGGAACAGAAATCAGAGTCTGCTGACGAAGGGGAAGCCTC
GAAGGCAATCTCGATGGAAGGAACAGTAGAAGAAGATGACGAGGAAGCTG
CAGCCAAGTAG
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