Gchil5730.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5730.t1
Unique NameGchil5730.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1206463..1206762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007155406.1
PFAMsGlyco_transf_20,Trehalose_PPase
Max annot lvl35493|Streptophyta
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009311,GO:0009312,GO:0009987,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0033554,GO:0034637,GO:0042578,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0050896,GO:0051716,GO:0070413,GO:0071704,GO:1901576
Evalue0.000701
EggNOG OGsCOG1877@1|root,KOG1050@2759|Eukaryota,37ITE@33090|Viridiplantae,3G7XC@35493|Streptophyta,4JF2C@91835|fabids
EC2.4.1.15,3.1.3.12
Descriptionalpha,alpha-trehalose-phosphate synthase UDP-forming
COG categoryG
CAZyGT20
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5730Gchil5730Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1206463..1206762 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5730.t1.stop1Gchil5730.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1206463..1206465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5730.t1.CDS1Gchil5730.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1206463..1206762 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5730.t1.exon1Gchil5730.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1206463..1206762 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5730.t1.start1Gchil5730.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1206760..1206762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5730.t1Gchil5730.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1206463..1206762 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5730.t1 ID=Gchil5730.t1|Name=Gchil5730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=100bp
MEVLMFQTILCVRLKELHKEATVAEVLQQLKKEDEWPSAVLFIDEDRADD
DMLTELYQASKQMDMFMNTRTVGRKTTPANYYVNGFDDVLHLLDVLRPP*
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spliced messenger RNA

>Gchil5730.t1 ID=Gchil5730.t1|Name=Gchil5730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp|location=Sequence derived from alignment at tig00000015_pilon:1206463..1206762- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTCCTAATGTTCCAAACGATTTTGTGTGTTCGACTGAAAGAATT
ACACAAAGAGGCAACTGTGGCAGAAGTACTTCAACAATTGAAGAAAGAAG
ACGAATGGCCAAGCGCGGTGTTGTTCATTGACGAAGACCGGGCCGATGAC
GATATGCTCACCGAATTATATCAAGCATCAAAGCAAATGGACATGTTTAT
GAACACCCGCACTGTGGGGCGAAAGACCACGCCTGCAAATTATTATGTAA
ATGGCTTCGATGATGTTCTTCATCTCCTGGACGTTCTGCGCCCACCTTGA
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protein sequence of Gchil5730.t1

>Gchil5730.t1 ID=Gchil5730.t1|Name=Gchil5730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=100bp
MEVLMFQTILCVRLKELHKEATVAEVLQQLKKEDEWPSAVLFIDEDRADD
DMLTELYQASKQMDMFMNTRTVGRKTTPANYYVNGFDDVLHLLDVLRPP*
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mRNA from alignment at tig00000015_pilon:1206463..1206762-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5730.t1 ID=Gchil5730.t1|Name=Gchil5730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp|location=Sequence derived from alignment at tig00000015_pilon:1206463..1206762- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTCCTAATGTTCCAAACGATTTTGTGTGTTCGACTGAAAGAATT
ACACAAAGAGGCAACTGTGGCAGAAGTACTTCAACAATTGAAGAAAGAAG
ACGAATGGCCAAGCGCGGTGTTGTTCATTGACGAAGACCGGGCCGATGAC
GATATGCTCACCGAATTATATCAAGCATCAAAGCAAATGGACATGTTTAT
GAACACCCGCACTGTGGGGCGAAAGACCACGCCTGCAAATTATTATGTAA
ATGGCTTCGATGATGTTCTTCATCTCCTGGACGTTCTGCGCCCACCTTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1206463..1206762-

>Gchil5730.t1 ID=Gchil5730.t1|Name=Gchil5730.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=300bp|location=Sequence derived from alignment at tig00000015_pilon:1206463..1206762- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTCCTAATGTTCCAAACGATTTTGTGTGTTCGACTGAAAGAATT
ACACAAAGAGGCAACTGTGGCAGAAGTACTTCAACAATTGAAGAAAGAAG
ACGAATGGCCAAGCGCGGTGTTGTTCATTGACGAAGACCGGGCCGATGAC
GATATGCTCACCGAATTATATCAAGCATCAAAGCAAATGGACATGTTTAT
GAACACCCGCACTGTGGGGCGAAAGACCACGCCTGCAAATTATTATGTAA
ATGGCTTCGATGATGTTCTTCATCTCCTGGACGTTCTGCGCCCACCTTGA
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