Gchil5725.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5725.t1
Unique NameGchil5725.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length784
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1122989..1125340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705938.1
PFAMstRNA-synt_1c,tRNA-synt_1c_C,tRNA_synt_1c_R1
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01886
KEGG ReactionR03652
KEGG Pathwayko00970,ko01100,map00970,map01100
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006425,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
Evalue3.3e-238
EggNOG OGsCOG0008@1|root,KOG1148@2759|Eukaryota
EC6.1.1.18
Descriptionglutaminyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5725Gchil5725Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1122989..1125340 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5725.t1.stop1Gchil5725.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1122989..1122991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5725.t1.CDS1Gchil5725.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1122989..1125340 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5725.t1.exon1Gchil5725.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1122989..1125340 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5725.t1.start1Gchil5725.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1125338..1125340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5725.t1Gchil5725.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1122989..1125340 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5725.t1 ID=Gchil5725.t1|Name=Gchil5725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=784bp
MPSNSVNEISPEAQTRVATLEEYGLETRLAHTVGKSEKTTSTLLDAFNCA
SLSPNPENGAEKAALLYTATTKLNSIVGKNGRTLLYSAIGTGKIDDSPHV
EAAAAWLNAVYKAAGGSVPDAKIKLDDVPIDEEKFEHAAGVGVVVSYQDI
KDAVNEAIEANKAELMEKRYRFNSGMMQRRVMEKLRFADGKVLNNLIRSG
VEELLGPKTESDLAKPPKIKKAKAKKATVAKKAEQGTEEIADPFEGVPNR
FEARGLSSAENTPELLEKHRKATGGKVVTRFPPEPNGYLHVGHAKAMFID
FGYAKKMGGDCILRFDDTNPTVEKTEYIEGIIEMVTWMGHTPVRITYSSE
YFEELYDLAVELIKRGKAYVCHQTGDEISKGRKEGTDSPWRDRSVEENIR
LFDDMRKAKFAEGEATLRMKIDMNHPNLVMRDPVAYRVIHAPHPHIGDKW
CVYPSYDYTHCIVDSLEWITHSLCTLEFEIRRDSYYWLLEALDLYRPFVW
ESSRLNLEYTVMSKRKLKLLVMQGYVRGWDDPRMPTLVGMRRRGYSPSSL
NRFCNAIGVSRANNVIGMHVLEHWVRTDHDSNCKRVLAVLRPLKVTISNF
KENERLSVSNHPKKEEMGKREVMLTKTVYIERTDFRLTDEKGYYGLAPNK
SAMLRYAYPIKVTGVVKENGEVAELIAEMDYGKSTKPKGVLHWVGENAIP
FEARLYSTLFKSPDPSLLKDDWLTDLNKESEIVLKNSLIEKSAKDSKVGD
TYQFERTGYFTADTDSTSENMIFNMTVSLRDSR*
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spliced messenger RNA

>Gchil5725.t1 ID=Gchil5725.t1|Name=Gchil5725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2352bp|location=Sequence derived from alignment at tig00000015_pilon:1122989..1125340- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCAAACTCGGTCAACGAAATCTCTCCCGAAGCCCAGACGCGAGT
TGCCACTTTAGAAGAGTACGGTCTCGAAACACGTTTGGCTCACACAGTTG
GAAAGAGTGAAAAGACCACCAGCACTCTTCTCGATGCATTCAATTGCGCT
TCACTGAGTCCAAATCCAGAGAATGGAGCGGAAAAAGCTGCCTTGTTATA
TACTGCAACAACAAAGCTCAACTCAATCGTTGGGAAGAATGGACGTACTC
TTCTCTACAGCGCCATTGGAACTGGAAAGATAGATGACTCTCCTCACGTA
GAAGCTGCCGCTGCGTGGTTGAATGCTGTCTACAAGGCGGCGGGGGGCTC
AGTTCCAGATGCTAAAATCAAGTTAGATGATGTGCCTATCGATGAGGAAA
AGTTTGAGCATGCTGCTGGTGTGGGCGTTGTGGTTTCATATCAGGACATT
AAGGATGCTGTTAATGAAGCAATCGAAGCAAACAAAGCTGAACTCATGGA
AAAGCGATACCGCTTCAATTCGGGCATGATGCAGAGAAGAGTAATGGAGA
AACTTCGATTTGCAGATGGAAAAGTCCTTAATAACCTCATACGTTCTGGT
GTAGAAGAGCTTCTCGGTCCTAAGACTGAGTCGGACTTGGCCAAACCACC
CAAAATTAAGAAGGCGAAAGCGAAAAAGGCAACTGTTGCGAAGAAGGCGG
AGCAAGGAACCGAGGAGATTGCTGATCCGTTTGAAGGCGTGCCAAATAGA
TTCGAAGCCCGAGGGCTGTCGAGCGCCGAGAACACACCCGAACTGCTCGA
GAAGCACCGAAAGGCAACCGGCGGGAAAGTGGTGACGAGGTTTCCTCCAG
AGCCAAACGGATACCTACATGTTGGTCACGCGAAAGCTATGTTTATCGAT
TTTGGATATGCCAAGAAAATGGGAGGAGATTGTATTCTTCGCTTCGATGA
CACAAATCCAACGGTGGAAAAAACCGAGTACATTGAGGGAATTATAGAAA
TGGTGACATGGATGGGGCACACACCAGTCCGCATCACATACAGCTCTGAG
TACTTTGAAGAACTGTACGATCTTGCTGTTGAACTTATCAAGCGGGGAAA
GGCGTACGTGTGTCACCAGACAGGAGACGAGATATCGAAGGGCCGAAAGG
AAGGCACTGATTCACCTTGGCGAGATAGAAGCGTAGAGGAAAATATACGT
CTATTTGACGACATGCGCAAGGCAAAGTTCGCAGAAGGGGAAGCCACTCT
TCGAATGAAGATTGATATGAACCATCCAAATTTGGTCATGCGTGACCCAG
TTGCATACCGAGTCATCCACGCCCCTCATCCTCATATCGGAGACAAGTGG
TGCGTGTATCCTTCATACGACTACACCCACTGCATCGTTGACTCGTTGGA
ATGGATTACCCATTCTCTGTGCACCCTGGAATTCGAGATTAGGCGCGATT
CATATTACTGGCTGTTAGAAGCGCTTGACCTTTATCGACCGTTCGTATGG
GAATCGTCGAGGCTCAACCTCGAATACACGGTTATGTCAAAACGAAAGTT
GAAGCTGCTGGTAATGCAGGGATATGTCCGCGGATGGGATGATCCACGGA
TGCCGACTTTGGTTGGAATGAGACGTCGTGGGTACTCACCGAGCTCGCTC
AATCGTTTCTGCAATGCCATAGGCGTTTCTAGAGCGAATAACGTGATTGG
TATGCACGTCTTAGAACATTGGGTTCGAACGGATCACGATTCAAATTGCA
AGAGGGTGTTGGCTGTGCTTCGACCCTTGAAGGTAACCATCAGCAACTTC
AAAGAAAACGAACGGCTGAGTGTCTCGAATCATCCGAAGAAGGAGGAAAT
GGGCAAACGCGAAGTGATGTTAACCAAGACTGTCTATATCGAGAGAACTG
ATTTCAGATTGACTGACGAAAAAGGATATTATGGTCTAGCGCCCAACAAA
AGCGCTATGTTGCGCTATGCCTACCCCATCAAGGTTACCGGTGTAGTTAA
AGAAAATGGAGAGGTCGCGGAATTGATCGCCGAAATGGACTACGGCAAGT
CAACAAAACCAAAGGGTGTACTCCATTGGGTTGGGGAGAACGCAATTCCC
TTCGAGGCTCGTCTGTATAGTACTCTCTTCAAGAGCCCGGACCCTTCACT
TCTAAAGGACGATTGGCTGACTGATTTGAACAAAGAAAGCGAGATTGTTT
TGAAAAATTCTCTGATAGAGAAGAGTGCCAAGGACTCGAAAGTTGGTGAC
ACTTACCAATTTGAACGAACGGGATATTTTACGGCAGATACGGACAGCAC
GTCTGAGAATATGATATTTAACATGACCGTCTCACTACGGGACTCGCGCT
GA
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protein sequence of Gchil5725.t1

>Gchil5725.t1 ID=Gchil5725.t1|Name=Gchil5725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=784bp
MPSNSVNEISPEAQTRVATLEEYGLETRLAHTVGKSEKTTSTLLDAFNCA
SLSPNPENGAEKAALLYTATTKLNSIVGKNGRTLLYSAIGTGKIDDSPHV
EAAAAWLNAVYKAAGGSVPDAKIKLDDVPIDEEKFEHAAGVGVVVSYQDI
KDAVNEAIEANKAELMEKRYRFNSGMMQRRVMEKLRFADGKVLNNLIRSG
VEELLGPKTESDLAKPPKIKKAKAKKATVAKKAEQGTEEIADPFEGVPNR
FEARGLSSAENTPELLEKHRKATGGKVVTRFPPEPNGYLHVGHAKAMFID
FGYAKKMGGDCILRFDDTNPTVEKTEYIEGIIEMVTWMGHTPVRITYSSE
YFEELYDLAVELIKRGKAYVCHQTGDEISKGRKEGTDSPWRDRSVEENIR
LFDDMRKAKFAEGEATLRMKIDMNHPNLVMRDPVAYRVIHAPHPHIGDKW
CVYPSYDYTHCIVDSLEWITHSLCTLEFEIRRDSYYWLLEALDLYRPFVW
ESSRLNLEYTVMSKRKLKLLVMQGYVRGWDDPRMPTLVGMRRRGYSPSSL
NRFCNAIGVSRANNVIGMHVLEHWVRTDHDSNCKRVLAVLRPLKVTISNF
KENERLSVSNHPKKEEMGKREVMLTKTVYIERTDFRLTDEKGYYGLAPNK
SAMLRYAYPIKVTGVVKENGEVAELIAEMDYGKSTKPKGVLHWVGENAIP
FEARLYSTLFKSPDPSLLKDDWLTDLNKESEIVLKNSLIEKSAKDSKVGD
TYQFERTGYFTADTDSTSENMIFNMTVSLRDSR*
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mRNA from alignment at tig00000015_pilon:1122989..1125340-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5725.t1 ID=Gchil5725.t1|Name=Gchil5725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2352bp|location=Sequence derived from alignment at tig00000015_pilon:1122989..1125340- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCAAACTCGGTCAACGAAATCTCTCCCGAAGCCCAGACGCGAGT TGCCACTTTAGAAGAGTACGGTCTCGAAACACGTTTGGCTCACACAGTTG GAAAGAGTGAAAAGACCACCAGCACTCTTCTCGATGCATTCAATTGCGCT TCACTGAGTCCAAATCCAGAGAATGGAGCGGAAAAAGCTGCCTTGTTATA TACTGCAACAACAAAGCTCAACTCAATCGTTGGGAAGAATGGACGTACTC TTCTCTACAGCGCCATTGGAACTGGAAAGATAGATGACTCTCCTCACGTA GAAGCTGCCGCTGCGTGGTTGAATGCTGTCTACAAGGCGGCGGGGGGCTC AGTTCCAGATGCTAAAATCAAGTTAGATGATGTGCCTATCGATGAGGAAA AGTTTGAGCATGCTGCTGGTGTGGGCGTTGTGGTTTCATATCAGGACATT AAGGATGCTGTTAATGAAGCAATCGAAGCAAACAAAGCTGAACTCATGGA AAAGCGATACCGCTTCAATTCGGGCATGATGCAGAGAAGAGTAATGGAGA AACTTCGATTTGCAGATGGAAAAGTCCTTAATAACCTCATACGTTCTGGT GTAGAAGAGCTTCTCGGTCCTAAGACTGAGTCGGACTTGGCCAAACCACC CAAAATTAAGAAGGCGAAAGCGAAAAAGGCAACTGTTGCGAAGAAGGCGG AGCAAGGAACCGAGGAGATTGCTGATCCGTTTGAAGGCGTGCCAAATAGA TTCGAAGCCCGAGGGCTGTCGAGCGCCGAGAACACACCCGAACTGCTCGA GAAGCACCGAAAGGCAACCGGCGGGAAAGTGGTGACGAGGTTTCCTCCAG AGCCAAACGGATACCTACATGTTGGTCACGCGAAAGCTATGTTTATCGAT TTTGGATATGCCAAGAAAATGGGAGGAGATTGTATTCTTCGCTTCGATGA CACAAATCCAACGGTGGAAAAAACCGAGTACATTGAGGGAATTATAGAAA TGGTGACATGGATGGGGCACACACCAGTCCGCATCACATACAGCTCTGAG TACTTTGAAGAACTGTACGATCTTGCTGTTGAACTTATCAAGCGGGGAAA GGCGTACGTGTGTCACCAGACAGGAGACGAGATATCGAAGGGCCGAAAGG AAGGCACTGATTCACCTTGGCGAGATAGAAGCGTAGAGGAAAATATACGT CTATTTGACGACATGCGCAAGGCAAAGTTCGCAGAAGGGGAAGCCACTCT TCGAATGAAGATTGATATGAACCATCCAAATTTGGTCATGCGTGACCCAG TTGCATACCGAGTCATCCACGCCCCTCATCCTCATATCGGAGACAAGTGG TGCGTGTATCCTTCATACGACTACACCCACTGCATCGTTGACTCGTTGGA ATGGATTACCCATTCTCTGTGCACCCTGGAATTCGAGATTAGGCGCGATT CATATTACTGGCTGTTAGAAGCGCTTGACCTTTATCGACCGTTCGTATGG GAATCGTCGAGGCTCAACCTCGAATACACGGTTATGTCAAAACGAAAGTT GAAGCTGCTGGTAATGCAGGGATATGTCCGCGGATGGGATGATCCACGGA TGCCGACTTTGGTTGGAATGAGACGTCGTGGGTACTCACCGAGCTCGCTC AATCGTTTCTGCAATGCCATAGGCGTTTCTAGAGCGAATAACGTGATTGG TATGCACGTCTTAGAACATTGGGTTCGAACGGATCACGATTCAAATTGCA AGAGGGTGTTGGCTGTGCTTCGACCCTTGAAGGTAACCATCAGCAACTTC AAAGAAAACGAACGGCTGAGTGTCTCGAATCATCCGAAGAAGGAGGAAAT GGGCAAACGCGAAGTGATGTTAACCAAGACTGTCTATATCGAGAGAACTG ATTTCAGATTGACTGACGAAAAAGGATATTATGGTCTAGCGCCCAACAAA AGCGCTATGTTGCGCTATGCCTACCCCATCAAGGTTACCGGTGTAGTTAA AGAAAATGGAGAGGTCGCGGAATTGATCGCCGAAATGGACTACGGCAAGT CAACAAAACCAAAGGGTGTACTCCATTGGGTTGGGGAGAACGCAATTCCC TTCGAGGCTCGTCTGTATAGTACTCTCTTCAAGAGCCCGGACCCTTCACT TCTAAAGGACGATTGGCTGACTGATTTGAACAAAGAAAGCGAGATTGTTT TGAAAAATTCTCTGATAGAGAAGAGTGCCAAGGACTCGAAAGTTGGTGAC ACTTACCAATTTGAACGAACGGGATATTTTACGGCAGATACGGACAGCAC GTCTGAGAATATGATATTTAACATGACCGTCTCACTACGGGACTCGCGCT GA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1122989..1125340-

>Gchil5725.t1 ID=Gchil5725.t1|Name=Gchil5725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2352bp|location=Sequence derived from alignment at tig00000015_pilon:1122989..1125340- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCAAACTCGGTCAACGAAATCTCTCCCGAAGCCCAGACGCGAGT
TGCCACTTTAGAAGAGTACGGTCTCGAAACACGTTTGGCTCACACAGTTG
GAAAGAGTGAAAAGACCACCAGCACTCTTCTCGATGCATTCAATTGCGCT
TCACTGAGTCCAAATCCAGAGAATGGAGCGGAAAAAGCTGCCTTGTTATA
TACTGCAACAACAAAGCTCAACTCAATCGTTGGGAAGAATGGACGTACTC
TTCTCTACAGCGCCATTGGAACTGGAAAGATAGATGACTCTCCTCACGTA
GAAGCTGCCGCTGCGTGGTTGAATGCTGTCTACAAGGCGGCGGGGGGCTC
AGTTCCAGATGCTAAAATCAAGTTAGATGATGTGCCTATCGATGAGGAAA
AGTTTGAGCATGCTGCTGGTGTGGGCGTTGTGGTTTCATATCAGGACATT
AAGGATGCTGTTAATGAAGCAATCGAAGCAAACAAAGCTGAACTCATGGA
AAAGCGATACCGCTTCAATTCGGGCATGATGCAGAGAAGAGTAATGGAGA
AACTTCGATTTGCAGATGGAAAAGTCCTTAATAACCTCATACGTTCTGGT
GTAGAAGAGCTTCTCGGTCCTAAGACTGAGTCGGACTTGGCCAAACCACC
CAAAATTAAGAAGGCGAAAGCGAAAAAGGCAACTGTTGCGAAGAAGGCGG
AGCAAGGAACCGAGGAGATTGCTGATCCGTTTGAAGGCGTGCCAAATAGA
TTCGAAGCCCGAGGGCTGTCGAGCGCCGAGAACACACCCGAACTGCTCGA
GAAGCACCGAAAGGCAACCGGCGGGAAAGTGGTGACGAGGTTTCCTCCAG
AGCCAAACGGATACCTACATGTTGGTCACGCGAAAGCTATGTTTATCGAT
TTTGGATATGCCAAGAAAATGGGAGGAGATTGTATTCTTCGCTTCGATGA
CACAAATCCAACGGTGGAAAAAACCGAGTACATTGAGGGAATTATAGAAA
TGGTGACATGGATGGGGCACACACCAGTCCGCATCACATACAGCTCTGAG
TACTTTGAAGAACTGTACGATCTTGCTGTTGAACTTATCAAGCGGGGAAA
GGCGTACGTGTGTCACCAGACAGGAGACGAGATATCGAAGGGCCGAAAGG
AAGGCACTGATTCACCTTGGCGAGATAGAAGCGTAGAGGAAAATATACGT
CTATTTGACGACATGCGCAAGGCAAAGTTCGCAGAAGGGGAAGCCACTCT
TCGAATGAAGATTGATATGAACCATCCAAATTTGGTCATGCGTGACCCAG
TTGCATACCGAGTCATCCACGCCCCTCATCCTCATATCGGAGACAAGTGG
TGCGTGTATCCTTCATACGACTACACCCACTGCATCGTTGACTCGTTGGA
ATGGATTACCCATTCTCTGTGCACCCTGGAATTCGAGATTAGGCGCGATT
CATATTACTGGCTGTTAGAAGCGCTTGACCTTTATCGACCGTTCGTATGG
GAATCGTCGAGGCTCAACCTCGAATACACGGTTATGTCAAAACGAAAGTT
GAAGCTGCTGGTAATGCAGGGATATGTCCGCGGATGGGATGATCCACGGA
TGCCGACTTTGGTTGGAATGAGACGTCGTGGGTACTCACCGAGCTCGCTC
AATCGTTTCTGCAATGCCATAGGCGTTTCTAGAGCGAATAACGTGATTGG
TATGCACGTCTTAGAACATTGGGTTCGAACGGATCACGATTCAAATTGCA
AGAGGGTGTTGGCTGTGCTTCGACCCTTGAAGGTAACCATCAGCAACTTC
AAAGAAAACGAACGGCTGAGTGTCTCGAATCATCCGAAGAAGGAGGAAAT
GGGCAAACGCGAAGTGATGTTAACCAAGACTGTCTATATCGAGAGAACTG
ATTTCAGATTGACTGACGAAAAAGGATATTATGGTCTAGCGCCCAACAAA
AGCGCTATGTTGCGCTATGCCTACCCCATCAAGGTTACCGGTGTAGTTAA
AGAAAATGGAGAGGTCGCGGAATTGATCGCCGAAATGGACTACGGCAAGT
CAACAAAACCAAAGGGTGTACTCCATTGGGTTGGGGAGAACGCAATTCCC
TTCGAGGCTCGTCTGTATAGTACTCTCTTCAAGAGCCCGGACCCTTCACT
TCTAAAGGACGATTGGCTGACTGATTTGAACAAAGAAAGCGAGATTGTTT
TGAAAAATTCTCTGATAGAGAAGAGTGCCAAGGACTCGAAAGTTGGTGAC
ACTTACCAATTTGAACGAACGGGATATTTTACGGCAGATACGGACAGCAC
GTCTGAGAATATGATATTTAACATGACCGTCTCACTACGGGACTCGCGCT
GA
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