Gchil5722.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5722.t1
Unique NameGchil5722.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1119365..1120252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI57116
PFAMsDUF92
Max annot lvl4776|Peronosporales
Evalue2.49e-51
EggNOG OGsCOG1836@1|root,KOG4491@2759|Eukaryota,3QE9A@4776|Peronosporales
DescriptionIntegral membrane protein DUF92
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5722Gchil5722Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1119365..1120252 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5722.t1.stop1Gchil5722.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1119365..1119367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5722.t1.CDS1Gchil5722.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1119365..1120252 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5722.t1.exon1Gchil5722.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1119365..1120252 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5722.t1.start1Gchil5722.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1120250..1120252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5722.t1Gchil5722.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1119365..1120252 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5722.t1 ID=Gchil5722.t1|Name=Gchil5722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=296bp
MSPITANEALRVLTAILFAVTMAVRGRRRKSLSPSGAAAVLFVGFFSFAA
SVRFGLTLLAFYLSATRATKYKSEYKRKVEDGYSSPNGNRNAFQVLASTL
PAVMVADLYAFWFRVDTIVSMQQPESSVLLLSFLLFFAACGGDTFASEIG
IAMPGPGKLPVLILAPWRHVPRGTNGGITWEGTLASAFGGFIVGITFFLT
GPSWELSQATLIVVGILGGVVGSIFDSMIGCAVEASWLDKVEGKVCKEKP
VVSAKDQDRFEHICGADILSGEAVNCVAAVATAACAPLVLRLFSN*
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spliced messenger RNA

>Gchil5722.t1 ID=Gchil5722.t1|Name=Gchil5722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000015_pilon:1119365..1120252- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGATCACCGCAAACGAAGCGCTGCGCGTACTCACGGCCATCCT
CTTCGCCGTAACCATGGCCGTGCGCGGCCGCCGTCGCAAATCATTATCTC
CCTCTGGTGCCGCCGCCGTTCTCTTTGTCGGCTTCTTCTCCTTCGCCGCC
TCCGTTCGATTCGGCCTCACACTCCTTGCATTCTACCTTTCCGCCACGCG
TGCCACCAAGTACAAATCTGAGTACAAACGCAAAGTGGAGGATGGATACT
CGAGCCCCAACGGTAATCGCAATGCATTTCAAGTGCTGGCCAGCACGTTG
CCGGCGGTCATGGTCGCAGATTTGTACGCGTTTTGGTTCCGCGTGGACAC
AATTGTTTCAATGCAACAGCCTGAGTCCTCCGTGCTTTTGCTGTCGTTCC
TGCTCTTCTTTGCTGCGTGTGGTGGAGATACGTTTGCGTCCGAGATAGGT
ATAGCTATGCCGGGTCCTGGGAAGCTGCCAGTGTTGATCCTGGCGCCCTG
GCGGCATGTGCCACGCGGCACAAACGGCGGCATCACATGGGAGGGAACGC
TAGCATCCGCGTTTGGCGGTTTCATCGTGGGGATTACCTTTTTTCTTACA
GGTCCGAGCTGGGAGCTATCGCAAGCGACGCTGATCGTGGTCGGCATCCT
TGGCGGCGTCGTGGGCAGCATTTTCGATTCGATGATCGGCTGTGCGGTAG
AGGCTTCTTGGCTGGACAAGGTGGAGGGCAAGGTGTGTAAAGAAAAGCCA
GTGGTGAGTGCGAAGGACCAGGATCGCTTCGAGCACATTTGCGGGGCAGA
TATTCTGAGCGGCGAGGCTGTGAATTGTGTGGCCGCCGTCGCCACTGCGG
CTTGTGCGCCTTTGGTGTTACGGCTGTTCAGCAACTGA
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protein sequence of Gchil5722.t1

>Gchil5722.t1 ID=Gchil5722.t1|Name=Gchil5722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=296bp
MSPITANEALRVLTAILFAVTMAVRGRRRKSLSPSGAAAVLFVGFFSFAA
SVRFGLTLLAFYLSATRATKYKSEYKRKVEDGYSSPNGNRNAFQVLASTL
PAVMVADLYAFWFRVDTIVSMQQPESSVLLLSFLLFFAACGGDTFASEIG
IAMPGPGKLPVLILAPWRHVPRGTNGGITWEGTLASAFGGFIVGITFFLT
GPSWELSQATLIVVGILGGVVGSIFDSMIGCAVEASWLDKVEGKVCKEKP
VVSAKDQDRFEHICGADILSGEAVNCVAAVATAACAPLVLRLFSN*
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mRNA from alignment at tig00000015_pilon:1119365..1120252-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5722.t1 ID=Gchil5722.t1|Name=Gchil5722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000015_pilon:1119365..1120252- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCGATCACCGCAAACGAAGCGCTGCGCGTACTCACGGCCATCCT
CTTCGCCGTAACCATGGCCGTGCGCGGCCGCCGTCGCAAATCATTATCTC
CCTCTGGTGCCGCCGCCGTTCTCTTTGTCGGCTTCTTCTCCTTCGCCGCC
TCCGTTCGATTCGGCCTCACACTCCTTGCATTCTACCTTTCCGCCACGCG
TGCCACCAAGTACAAATCTGAGTACAAACGCAAAGTGGAGGATGGATACT
CGAGCCCCAACGGTAATCGCAATGCATTTCAAGTGCTGGCCAGCACGTTG
CCGGCGGTCATGGTCGCAGATTTGTACGCGTTTTGGTTCCGCGTGGACAC
AATTGTTTCAATGCAACAGCCTGAGTCCTCCGTGCTTTTGCTGTCGTTCC
TGCTCTTCTTTGCTGCGTGTGGTGGAGATACGTTTGCGTCCGAGATAGGT
ATAGCTATGCCGGGTCCTGGGAAGCTGCCAGTGTTGATCCTGGCGCCCTG
GCGGCATGTGCCACGCGGCACAAACGGCGGCATCACATGGGAGGGAACGC
TAGCATCCGCGTTTGGCGGTTTCATCGTGGGGATTACCTTTTTTCTTACA
GGTCCGAGCTGGGAGCTATCGCAAGCGACGCTGATCGTGGTCGGCATCCT
TGGCGGCGTCGTGGGCAGCATTTTCGATTCGATGATCGGCTGTGCGGTAG
AGGCTTCTTGGCTGGACAAGGTGGAGGGCAAGGTGTGTAAAGAAAAGCCA
GTGGTGAGTGCGAAGGACCAGGATCGCTTCGAGCACATTTGCGGGGCAGA
TATTCTGAGCGGCGAGGCTGTGAATTGTGTGGCCGCCGTCGCCACTGCGG
CTTGTGCGCCTTTGGTGTTACGGCTGTTCAGCAACTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1119365..1120252-

>Gchil5722.t1 ID=Gchil5722.t1|Name=Gchil5722.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000015_pilon:1119365..1120252- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCCGATCACCGCAAACGAAGCGCTGCGCGTACTCACGGCCATCCT
CTTCGCCGTAACCATGGCCGTGCGCGGCCGCCGTCGCAAATCATTATCTC
CCTCTGGTGCCGCCGCCGTTCTCTTTGTCGGCTTCTTCTCCTTCGCCGCC
TCCGTTCGATTCGGCCTCACACTCCTTGCATTCTACCTTTCCGCCACGCG
TGCCACCAAGTACAAATCTGAGTACAAACGCAAAGTGGAGGATGGATACT
CGAGCCCCAACGGTAATCGCAATGCATTTCAAGTGCTGGCCAGCACGTTG
CCGGCGGTCATGGTCGCAGATTTGTACGCGTTTTGGTTCCGCGTGGACAC
AATTGTTTCAATGCAACAGCCTGAGTCCTCCGTGCTTTTGCTGTCGTTCC
TGCTCTTCTTTGCTGCGTGTGGTGGAGATACGTTTGCGTCCGAGATAGGT
ATAGCTATGCCGGGTCCTGGGAAGCTGCCAGTGTTGATCCTGGCGCCCTG
GCGGCATGTGCCACGCGGCACAAACGGCGGCATCACATGGGAGGGAACGC
TAGCATCCGCGTTTGGCGGTTTCATCGTGGGGATTACCTTTTTTCTTACA
GGTCCGAGCTGGGAGCTATCGCAAGCGACGCTGATCGTGGTCGGCATCCT
TGGCGGCGTCGTGGGCAGCATTTTCGATTCGATGATCGGCTGTGCGGTAG
AGGCTTCTTGGCTGGACAAGGTGGAGGGCAAGGTGTGTAAAGAAAAGCCA
GTGGTGAGTGCGAAGGACCAGGATCGCTTCGAGCACATTTGCGGGGCAGA
TATTCTGAGCGGCGAGGCTGTGAATTGTGTGGCCGCCGTCGCCACTGCGG
CTTGTGCGCCTTTGGTGTTACGGCTGTTCAGCAACTGA
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