Gchil5719.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5719.t1
Unique NameGchil5719.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1112651..1114144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ20192
Max annot lvl35493|Streptophyta
Evalue6.41e-133
EggNOG OGs2EE4A@1|root,2SJKF@2759|Eukaryota,37Z1F@33090|Viridiplantae,3GNYK@35493|Streptophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5719Gchil5719Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1112651..1114144 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5719.t1.stop1Gchil5719.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1112651..1112653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5719.t1.CDS1Gchil5719.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1112651..1114144 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5719.t1.exon1Gchil5719.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1112651..1114144 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5719.t1.start1Gchil5719.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1114142..1114144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5719.t1Gchil5719.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1112651..1114144 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5719.t1 ID=Gchil5719.t1|Name=Gchil5719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp
MALVCFPFKDELVPTLLRNVQIAASHSRVRLVLLVAACRNACYDHIRAAL
DARNASKEPYAAAVRLIVQARLGSHLRSGKGDGMNTALQYFLEAHRMPEN
SLLLQQRPLQRLHFYDADIESFDQQWISKAEHGVALGYDVVRHYFPRSST
DAQVTWQVTRLGFALLWPRSSLPWVQQPLGGELCLSRRVVHALVSDQRVL
QQSDWGIDTMYTFVCAQKNFSLLEVYVARGKIHALYGGLHQLKSMLCECF
GALQSVSTETVHEARGGSATHRVEPAQRVPHALAAKVGYDVEKSLGLLAT
GWSERQRQLLREHFEPVVRDGLLAAAQWPRFMFMDETRWIGAFKVMLQHF
DLRDGDWCELLFKMWVARVLNYTVRHVLRGYHAALQANADMVARLHMRGD
SGGSGDDDEELDEDEGYEQDDELEPTQAAATCAAAATIAPTTTDSCAATR
LPSSSVSSGSGCCVAEPSGERRSWRALDDALRELSIVTSQDRSDDAT*
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spliced messenger RNA

>Gchil5719.t1 ID=Gchil5719.t1|Name=Gchil5719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000015_pilon:1112651..1114144- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGGTGTGCTTCCCGTTCAAGGACGAGCTGGTGCCCACCTTGCT
GCGAAACGTCCAAATCGCCGCGTCGCACAGTCGCGTGCGCCTCGTGCTGC
TAGTTGCTGCGTGTCGCAACGCGTGCTATGACCACATCCGCGCCGCCCTC
GACGCGCGCAACGCCTCCAAGGAGCCGTACGCCGCCGCGGTGCGCCTCAT
CGTGCAGGCGCGCCTGGGCTCGCACCTGCGCTCCGGAAAGGGCGACGGTA
TGAATACCGCGCTGCAGTACTTTCTGGAGGCGCACCGCATGCCGGAAAAC
TCGCTACTGCTACAGCAGCGCCCGCTGCAGCGCTTGCACTTTTATGACGC
CGATATCGAGTCGTTCGACCAGCAGTGGATCTCTAAGGCCGAGCATGGCG
TCGCGCTGGGCTACGATGTGGTTCGCCACTACTTTCCGCGCAGCAGCACT
GATGCGCAAGTCACGTGGCAGGTGACTCGTCTGGGCTTTGCGTTGCTGTG
GCCGCGCTCGTCGTTGCCGTGGGTGCAACAGCCTCTCGGCGGCGAGCTAT
GTCTTTCGCGGCGCGTTGTGCACGCGCTGGTGAGCGACCAACGCGTGCTG
CAACAGTCGGACTGGGGTATCGACACCATGTACACCTTTGTCTGCGCGCA
GAAGAACTTTTCGCTGTTGGAGGTGTATGTGGCACGCGGTAAAATACACG
CGCTGTACGGTGGTTTGCATCAACTCAAGAGCATGTTGTGCGAGTGCTTC
GGGGCTCTGCAGAGCGTGAGCACCGAAACAGTGCATGAGGCGCGCGGCGG
AAGCGCGACGCACCGGGTGGAGCCGGCGCAACGCGTGCCGCACGCGCTGG
CTGCAAAGGTTGGCTACGACGTGGAGAAGAGCCTGGGGCTGCTGGCGACT
GGGTGGAGCGAACGGCAGCGGCAGCTGCTGCGCGAGCACTTTGAACCCGT
TGTGCGCGACGGGCTGCTCGCGGCGGCGCAGTGGCCGCGCTTCATGTTCA
TGGACGAGACGAGGTGGATTGGAGCTTTCAAGGTGATGTTGCAGCACTTT
GACCTCCGCGACGGCGATTGGTGCGAGCTGCTGTTCAAGATGTGGGTGGC
GCGCGTGCTCAACTACACGGTGCGCCACGTGCTGCGCGGCTACCACGCCG
CGCTGCAGGCCAACGCAGACATGGTGGCGCGGCTGCACATGCGCGGCGAC
AGCGGCGGTAGCGGCGACGACGACGAAGAGTTGGACGAGGACGAAGGGTA
CGAGCAAGACGACGAGCTGGAGCCCACGCAAGCGGCAGCCACTTGTGCGG
CAGCCGCTACGATAGCGCCGACTACGACGGACTCGTGTGCAGCGACGCGA
TTGCCCAGCTCCAGCGTGAGCTCCGGCTCCGGCTGCTGCGTGGCGGAGCC
ATCCGGTGAGCGCCGCTCGTGGCGCGCGCTGGACGACGCTCTGCGCGAGC
TCAGCATTGTCACCAGCCAAGACCGCAGCGACGACGCCACATGA
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protein sequence of Gchil5719.t1

>Gchil5719.t1 ID=Gchil5719.t1|Name=Gchil5719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=498bp
MALVCFPFKDELVPTLLRNVQIAASHSRVRLVLLVAACRNACYDHIRAAL
DARNASKEPYAAAVRLIVQARLGSHLRSGKGDGMNTALQYFLEAHRMPEN
SLLLQQRPLQRLHFYDADIESFDQQWISKAEHGVALGYDVVRHYFPRSST
DAQVTWQVTRLGFALLWPRSSLPWVQQPLGGELCLSRRVVHALVSDQRVL
QQSDWGIDTMYTFVCAQKNFSLLEVYVARGKIHALYGGLHQLKSMLCECF
GALQSVSTETVHEARGGSATHRVEPAQRVPHALAAKVGYDVEKSLGLLAT
GWSERQRQLLREHFEPVVRDGLLAAAQWPRFMFMDETRWIGAFKVMLQHF
DLRDGDWCELLFKMWVARVLNYTVRHVLRGYHAALQANADMVARLHMRGD
SGGSGDDDEELDEDEGYEQDDELEPTQAAATCAAAATIAPTTTDSCAATR
LPSSSVSSGSGCCVAEPSGERRSWRALDDALRELSIVTSQDRSDDAT*
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mRNA from alignment at tig00000015_pilon:1112651..1114144-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5719.t1 ID=Gchil5719.t1|Name=Gchil5719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000015_pilon:1112651..1114144- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTGGTGTGCTTCCCGTTCAAGGACGAGCTGGTGCCCACCTTGCT
GCGAAACGTCCAAATCGCCGCGTCGCACAGTCGCGTGCGCCTCGTGCTGC
TAGTTGCTGCGTGTCGCAACGCGTGCTATGACCACATCCGCGCCGCCCTC
GACGCGCGCAACGCCTCCAAGGAGCCGTACGCCGCCGCGGTGCGCCTCAT
CGTGCAGGCGCGCCTGGGCTCGCACCTGCGCTCCGGAAAGGGCGACGGTA
TGAATACCGCGCTGCAGTACTTTCTGGAGGCGCACCGCATGCCGGAAAAC
TCGCTACTGCTACAGCAGCGCCCGCTGCAGCGCTTGCACTTTTATGACGC
CGATATCGAGTCGTTCGACCAGCAGTGGATCTCTAAGGCCGAGCATGGCG
TCGCGCTGGGCTACGATGTGGTTCGCCACTACTTTCCGCGCAGCAGCACT
GATGCGCAAGTCACGTGGCAGGTGACTCGTCTGGGCTTTGCGTTGCTGTG
GCCGCGCTCGTCGTTGCCGTGGGTGCAACAGCCTCTCGGCGGCGAGCTAT
GTCTTTCGCGGCGCGTTGTGCACGCGCTGGTGAGCGACCAACGCGTGCTG
CAACAGTCGGACTGGGGTATCGACACCATGTACACCTTTGTCTGCGCGCA
GAAGAACTTTTCGCTGTTGGAGGTGTATGTGGCACGCGGTAAAATACACG
CGCTGTACGGTGGTTTGCATCAACTCAAGAGCATGTTGTGCGAGTGCTTC
GGGGCTCTGCAGAGCGTGAGCACCGAAACAGTGCATGAGGCGCGCGGCGG
AAGCGCGACGCACCGGGTGGAGCCGGCGCAACGCGTGCCGCACGCGCTGG
CTGCAAAGGTTGGCTACGACGTGGAGAAGAGCCTGGGGCTGCTGGCGACT
GGGTGGAGCGAACGGCAGCGGCAGCTGCTGCGCGAGCACTTTGAACCCGT
TGTGCGCGACGGGCTGCTCGCGGCGGCGCAGTGGCCGCGCTTCATGTTCA
TGGACGAGACGAGGTGGATTGGAGCTTTCAAGGTGATGTTGCAGCACTTT
GACCTCCGCGACGGCGATTGGTGCGAGCTGCTGTTCAAGATGTGGGTGGC
GCGCGTGCTCAACTACACGGTGCGCCACGTGCTGCGCGGCTACCACGCCG
CGCTGCAGGCCAACGCAGACATGGTGGCGCGGCTGCACATGCGCGGCGAC
AGCGGCGGTAGCGGCGACGACGACGAAGAGTTGGACGAGGACGAAGGGTA
CGAGCAAGACGACGAGCTGGAGCCCACGCAAGCGGCAGCCACTTGTGCGG
CAGCCGCTACGATAGCGCCGACTACGACGGACTCGTGTGCAGCGACGCGA
TTGCCCAGCTCCAGCGTGAGCTCCGGCTCCGGCTGCTGCGTGGCGGAGCC
ATCCGGTGAGCGCCGCTCGTGGCGCGCGCTGGACGACGCTCTGCGCGAGC
TCAGCATTGTCACCAGCCAAGACCGCAGCGACGACGCCACATGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1112651..1114144-

>Gchil5719.t1 ID=Gchil5719.t1|Name=Gchil5719.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000015_pilon:1112651..1114144- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGTTGGTGTGCTTCCCGTTCAAGGACGAGCTGGTGCCCACCTTGCT
GCGAAACGTCCAAATCGCCGCGTCGCACAGTCGCGTGCGCCTCGTGCTGC
TAGTTGCTGCGTGTCGCAACGCGTGCTATGACCACATCCGCGCCGCCCTC
GACGCGCGCAACGCCTCCAAGGAGCCGTACGCCGCCGCGGTGCGCCTCAT
CGTGCAGGCGCGCCTGGGCTCGCACCTGCGCTCCGGAAAGGGCGACGGTA
TGAATACCGCGCTGCAGTACTTTCTGGAGGCGCACCGCATGCCGGAAAAC
TCGCTACTGCTACAGCAGCGCCCGCTGCAGCGCTTGCACTTTTATGACGC
CGATATCGAGTCGTTCGACCAGCAGTGGATCTCTAAGGCCGAGCATGGCG
TCGCGCTGGGCTACGATGTGGTTCGCCACTACTTTCCGCGCAGCAGCACT
GATGCGCAAGTCACGTGGCAGGTGACTCGTCTGGGCTTTGCGTTGCTGTG
GCCGCGCTCGTCGTTGCCGTGGGTGCAACAGCCTCTCGGCGGCGAGCTAT
GTCTTTCGCGGCGCGTTGTGCACGCGCTGGTGAGCGACCAACGCGTGCTG
CAACAGTCGGACTGGGGTATCGACACCATGTACACCTTTGTCTGCGCGCA
GAAGAACTTTTCGCTGTTGGAGGTGTATGTGGCACGCGGTAAAATACACG
CGCTGTACGGTGGTTTGCATCAACTCAAGAGCATGTTGTGCGAGTGCTTC
GGGGCTCTGCAGAGCGTGAGCACCGAAACAGTGCATGAGGCGCGCGGCGG
AAGCGCGACGCACCGGGTGGAGCCGGCGCAACGCGTGCCGCACGCGCTGG
CTGCAAAGGTTGGCTACGACGTGGAGAAGAGCCTGGGGCTGCTGGCGACT
GGGTGGAGCGAACGGCAGCGGCAGCTGCTGCGCGAGCACTTTGAACCCGT
TGTGCGCGACGGGCTGCTCGCGGCGGCGCAGTGGCCGCGCTTCATGTTCA
TGGACGAGACGAGGTGGATTGGAGCTTTCAAGGTGATGTTGCAGCACTTT
GACCTCCGCGACGGCGATTGGTGCGAGCTGCTGTTCAAGATGTGGGTGGC
GCGCGTGCTCAACTACACGGTGCGCCACGTGCTGCGCGGCTACCACGCCG
CGCTGCAGGCCAACGCAGACATGGTGGCGCGGCTGCACATGCGCGGCGAC
AGCGGCGGTAGCGGCGACGACGACGAAGAGTTGGACGAGGACGAAGGGTA
CGAGCAAGACGACGAGCTGGAGCCCACGCAAGCGGCAGCCACTTGTGCGG
CAGCCGCTACGATAGCGCCGACTACGACGGACTCGTGTGCAGCGACGCGA
TTGCCCAGCTCCAGCGTGAGCTCCGGCTCCGGCTGCTGCGTGGCGGAGCC
ATCCGGTGAGCGCCGCTCGTGGCGCGCGCTGGACGACGCTCTGCGCGAGC
TCAGCATTGTCACCAGCCAAGACCGCAGCGACGACGCCACATGA
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